HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-JUL-08 3DQQ TITLE THE CRYSTAL STRUCTURE OF THE PUTATIVE TRNA SYNTHASE FROM SALMONELLA TITLE 2 TYPHIMURIUM LT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRNA SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: YGBK, STM2917; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TRNA SYNTHASE, SALMONELLA TYPHIMURIUM, STRUCTURAL GENOMICS, CSGID, KEYWDS 2 UNKNOWN FUNCTION, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.GU,M.ZHOU,W.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 21-FEB-24 3DQQ 1 SEQADV REVDAT 3 13-JUL-11 3DQQ 1 VERSN REVDAT 2 24-FEB-09 3DQQ 1 VERSN REVDAT 1 22-JUL-08 3DQQ 0 JRNL AUTH R.ZHANG,M.GU,M.ZHOU,W.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE PUTATIVE TRNA SYNTHASE FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM LT2 JRNL REF TO BE PUBLISHED 2008 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 127.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2515 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3419 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.73000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.276 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.259 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6336 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4161 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8615 ; 1.718 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10162 ; 1.014 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 827 ; 6.851 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;36.024 ;24.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 999 ;19.386 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;22.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 993 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7186 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1255 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1469 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4337 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3181 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3514 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5181 ; 1.148 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1694 ; 0.144 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6584 ; 1.361 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2493 ; 2.409 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2031 ; 3.680 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 420 REMARK 3 RESIDUE RANGE : B 1 B 419 REMARK 3 ORIGIN FOR THE GROUP (A): -35.6400 97.7420 11.5060 REMARK 3 T TENSOR REMARK 3 T11: -0.1738 T22: 0.0944 REMARK 3 T33: -0.1291 T12: 0.0142 REMARK 3 T13: 0.0100 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 0.6744 L22: 0.4453 REMARK 3 L33: 0.7181 L12: 0.2532 REMARK 3 L13: 0.0704 L23: 0.1479 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.0630 S13: -0.0511 REMARK 3 S21: 0.0624 S22: 0.0035 S23: -0.0771 REMARK 3 S31: 0.2237 S32: 0.2531 S33: -0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 127.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 1.0 REMARK 200 DATA REDUNDANCY : 25.10 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS/TRIS, 3M NACL, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.48633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.97267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.48633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.97267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.48633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 62.97267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 31.48633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 62.97267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS MONOMER AND DIMER. THE DEPOSITED REMARK 300 MOLB REPRESNETS THE MONOMER. MOLA EXISTS AS DIMER. THE SECOND PART REMARK 300 OF THE DIMER IS GENERATED BY THE OPERATION: -X,-X+Y,-Z-1/3 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -31.48633 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 240 REMARK 465 ALA A 241 REMARK 465 GLY B 0 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 VAL B 238 REMARK 465 SER B 239 REMARK 465 GLN B 240 REMARK 465 ALA B 241 REMARK 465 ARG B 242 REMARK 465 VAL B 420 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 287 CG GLU B 291 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 283 NH2 ARG B 283 12565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 259 CB CYS A 259 SG 0.117 REMARK 500 GLU A 350 CG GLU A 350 CD 0.098 REMARK 500 CYS A 381 CB CYS A 381 SG -0.151 REMARK 500 CYS B 84 CB CYS B 84 SG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 194 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 165.11 69.56 REMARK 500 LYS A 51 67.69 -104.20 REMARK 500 MET A 132 -123.90 63.54 REMARK 500 ARG A 214 -39.57 -39.09 REMARK 500 VAL A 238 -147.60 -129.59 REMARK 500 SER A 243 -55.76 -26.03 REMARK 500 ASP A 305 88.51 -158.22 REMARK 500 ILE A 324 -69.13 -96.48 REMARK 500 GLN A 419 -76.64 -92.85 REMARK 500 ASP B 33 165.02 117.41 REMARK 500 LYS B 51 66.18 -104.07 REMARK 500 SER B 89 -179.35 -171.72 REMARK 500 MET B 132 -117.78 58.56 REMARK 500 SER B 258 157.95 -44.66 REMARK 500 SER B 260 150.32 -46.64 REMARK 500 LEU B 285 56.43 -110.46 REMARK 500 SER B 286 128.78 165.83 REMARK 500 GLU B 288 -94.61 -43.70 REMARK 500 ARG B 290 -39.20 -28.63 REMARK 500 ALA B 322 -70.78 -34.03 REMARK 500 PRO B 384 116.82 -24.62 REMARK 500 HIS B 393 -57.46 -120.85 REMARK 500 PHE B 418 -34.57 -141.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 419 VAL A 420 -139.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00121 RELATED DB: TARGETDB REMARK 900 RELATED ID: APC23894 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE TARGET ID IDP00121 IS NOT IN THE TARGETDB HTTP:// REMARK 999 TARGETDB.PDB.ORG/ AT THE TIME OF PROCESSING. DBREF 3DQQ A 1 420 UNP Q8ZMG5 Q8ZMG5_SALTY 1 420 DBREF 3DQQ B 1 420 UNP Q8ZMG5 Q8ZMG5_SALTY 1 420 SEQADV 3DQQ GLY A 0 UNP Q8ZMG5 EXPRESSION TAG SEQADV 3DQQ GLY B 0 UNP Q8ZMG5 EXPRESSION TAG SEQRES 1 A 421 GLY MET LEU LYS ILE GLY VAL ILE ALA ASP ASP PHE THR SEQRES 2 A 421 GLY ALA THR ASP ILE ALA SER PHE LEU VAL GLU ASN GLY SEQRES 3 A 421 MET PRO THR VAL GLN ILE ASN ASP VAL PRO THR GLY THR SEQRES 4 A 421 GLN PRO GLU GLY CYS ASP ALA VAL VAL ILE SER LEU LYS SEQRES 5 A 421 THR ARG SER CYS PRO ALA GLN GLU ALA ILE LYS GLN SER SEQRES 6 A 421 LEU ALA ALA LEU VAL TRP LEU LYS LYS GLN GLY CYS GLN SEQRES 7 A 421 GLN VAL TYR PHE LYS TYR CYS SER THR PHE ASP SER THR SEQRES 8 A 421 ALA GLU GLY ASN ILE GLY PRO VAL THR ASP ALA LEU MET SEQRES 9 A 421 VAL ALA LEU ASP THR SER PHE THR VAL ILE SER PRO ALA SEQRES 10 A 421 LEU PRO VAL ASN GLY ARG THR VAL TYR GLN GLY TYR LEU SEQRES 11 A 421 PHE VAL MET ASN HIS LEU LEU ALA GLU SER GLY MET ARG SEQRES 12 A 421 HIS HIS PRO ILE ASN PRO MET THR ASP SER TYR LEU PRO SEQRES 13 A 421 ARG LEU MET GLU ALA GLN ALA GLN GLY ARG CYS GLY VAL SEQRES 14 A 421 ILE PRO ALA GLN THR LEU ASP GLU GLY VAL ALA ALA THR SEQRES 15 A 421 ARG ALA ALA LEU SER ARG LEU GLN GLN GLU GLY TYR ARG SEQRES 16 A 421 TYR ALA VAL LEU ASP ALA LEU ASN GLU ARG HIS LEU GLU SEQRES 17 A 421 ILE GLN GLY GLU VAL LEU ARG ASP ALA PRO LEU VAL THR SEQRES 18 A 421 GLY GLY SER GLY LEU ALA MET GLY LEU ALA ARG GLN TRP SEQRES 19 A 421 ALA LYS HIS GLY VAL SER GLN ALA ARG SER ALA GLY TYR SEQRES 20 A 421 PRO LEU SER GLY ARG ALA VAL VAL LEU SER GLY SER CYS SEQRES 21 A 421 SER GLN MET THR ASN GLN GLN VAL ALA PHE TYR ARG GLN SEQRES 22 A 421 HIS ALA PRO THR ARG ASP VAL ASP VAL ALA ARG CYS LEU SEQRES 23 A 421 SER SER GLU THR ARG GLU ALA TYR ALA GLU ALA LEU ALA SEQRES 24 A 421 GLN TRP VAL LEU SER GLN ASP SER GLU LEU ALA PRO MET SEQRES 25 A 421 ILE SER ALA THR ALA SER THR GLN ALA LEU ALA ALA ILE SEQRES 26 A 421 GLN GLN GLN TYR GLY ALA THR GLU ALA SER HIS ALA VAL SEQRES 27 A 421 GLU ALA LEU PHE SER LEU LEU ALA ALA ARG LEU ALA GLU SEQRES 28 A 421 GLY GLY ILE THR ARG PHE ILE VAL ALA GLY GLY GLU THR SEQRES 29 A 421 SER GLY VAL VAL THR GLN SER LEU GLY ILE THR GLY PHE SEQRES 30 A 421 HIS ILE GLY PRO CYS ILE SER PRO GLY VAL PRO TRP VAL SEQRES 31 A 421 ASN ALA LEU HIS ALA PRO VAL SER LEU ALA LEU LYS SER SEQRES 32 A 421 GLY ASN PHE GLY ASP GLU SER PHE PHE ILE ARG ALA GLN SEQRES 33 A 421 ARG GLU PHE GLN VAL SEQRES 1 B 421 GLY MET LEU LYS ILE GLY VAL ILE ALA ASP ASP PHE THR SEQRES 2 B 421 GLY ALA THR ASP ILE ALA SER PHE LEU VAL GLU ASN GLY SEQRES 3 B 421 MET PRO THR VAL GLN ILE ASN ASP VAL PRO THR GLY THR SEQRES 4 B 421 GLN PRO GLU GLY CYS ASP ALA VAL VAL ILE SER LEU LYS SEQRES 5 B 421 THR ARG SER CYS PRO ALA GLN GLU ALA ILE LYS GLN SER SEQRES 6 B 421 LEU ALA ALA LEU VAL TRP LEU LYS LYS GLN GLY CYS GLN SEQRES 7 B 421 GLN VAL TYR PHE LYS TYR CYS SER THR PHE ASP SER THR SEQRES 8 B 421 ALA GLU GLY ASN ILE GLY PRO VAL THR ASP ALA LEU MET SEQRES 9 B 421 VAL ALA LEU ASP THR SER PHE THR VAL ILE SER PRO ALA SEQRES 10 B 421 LEU PRO VAL ASN GLY ARG THR VAL TYR GLN GLY TYR LEU SEQRES 11 B 421 PHE VAL MET ASN HIS LEU LEU ALA GLU SER GLY MET ARG SEQRES 12 B 421 HIS HIS PRO ILE ASN PRO MET THR ASP SER TYR LEU PRO SEQRES 13 B 421 ARG LEU MET GLU ALA GLN ALA GLN GLY ARG CYS GLY VAL SEQRES 14 B 421 ILE PRO ALA GLN THR LEU ASP GLU GLY VAL ALA ALA THR SEQRES 15 B 421 ARG ALA ALA LEU SER ARG LEU GLN GLN GLU GLY TYR ARG SEQRES 16 B 421 TYR ALA VAL LEU ASP ALA LEU ASN GLU ARG HIS LEU GLU SEQRES 17 B 421 ILE GLN GLY GLU VAL LEU ARG ASP ALA PRO LEU VAL THR SEQRES 18 B 421 GLY GLY SER GLY LEU ALA MET GLY LEU ALA ARG GLN TRP SEQRES 19 B 421 ALA LYS HIS GLY VAL SER GLN ALA ARG SER ALA GLY TYR SEQRES 20 B 421 PRO LEU SER GLY ARG ALA VAL VAL LEU SER GLY SER CYS SEQRES 21 B 421 SER GLN MET THR ASN GLN GLN VAL ALA PHE TYR ARG GLN SEQRES 22 B 421 HIS ALA PRO THR ARG ASP VAL ASP VAL ALA ARG CYS LEU SEQRES 23 B 421 SER SER GLU THR ARG GLU ALA TYR ALA GLU ALA LEU ALA SEQRES 24 B 421 GLN TRP VAL LEU SER GLN ASP SER GLU LEU ALA PRO MET SEQRES 25 B 421 ILE SER ALA THR ALA SER THR GLN ALA LEU ALA ALA ILE SEQRES 26 B 421 GLN GLN GLN TYR GLY ALA THR GLU ALA SER HIS ALA VAL SEQRES 27 B 421 GLU ALA LEU PHE SER LEU LEU ALA ALA ARG LEU ALA GLU SEQRES 28 B 421 GLY GLY ILE THR ARG PHE ILE VAL ALA GLY GLY GLU THR SEQRES 29 B 421 SER GLY VAL VAL THR GLN SER LEU GLY ILE THR GLY PHE SEQRES 30 B 421 HIS ILE GLY PRO CYS ILE SER PRO GLY VAL PRO TRP VAL SEQRES 31 B 421 ASN ALA LEU HIS ALA PRO VAL SER LEU ALA LEU LYS SER SEQRES 32 B 421 GLY ASN PHE GLY ASP GLU SER PHE PHE ILE ARG ALA GLN SEQRES 33 B 421 ARG GLU PHE GLN VAL FORMUL 3 HOH *45(H2 O) HELIX 1 1 ASP A 10 ASN A 24 1 15 HELIX 2 2 PRO A 56 GLN A 74 1 19 HELIX 3 3 ASN A 94 LEU A 106 1 13 HELIX 4 4 LEU A 117 ASN A 120 5 4 HELIX 5 5 ALA A 137 HIS A 144 5 8 HELIX 6 6 TYR A 153 ALA A 160 1 8 HELIX 7 7 PRO A 170 GLY A 177 1 8 HELIX 8 8 GLY A 177 GLU A 191 1 15 HELIX 9 9 ASN A 202 ARG A 214 1 13 HELIX 10 10 GLY A 222 LYS A 235 1 14 HELIX 11 11 ARG A 242 TYR A 246 5 5 HELIX 12 12 SER A 260 ARG A 271 1 12 HELIX 13 13 ASP A 280 CYS A 284 5 5 HELIX 14 14 SER A 286 GLN A 304 1 19 HELIX 15 15 ALA A 316 THR A 318 5 3 HELIX 16 16 GLN A 319 GLN A 325 1 7 HELIX 17 17 SER A 334 GLY A 351 1 18 HELIX 18 18 GLY A 360 LEU A 371 1 12 HELIX 19 19 SER A 409 GLU A 417 1 9 HELIX 20 20 ASP B 10 GLU B 23 1 14 HELIX 21 21 PRO B 56 GLN B 74 1 19 HELIX 22 22 ASN B 94 ASP B 107 1 14 HELIX 23 23 LEU B 117 ASN B 120 5 4 HELIX 24 24 ALA B 137 HIS B 144 5 8 HELIX 25 25 TYR B 153 ALA B 162 1 10 HELIX 26 26 PRO B 170 GLY B 177 1 8 HELIX 27 27 GLY B 177 GLU B 191 1 15 HELIX 28 28 ASN B 202 LEU B 213 1 12 HELIX 29 29 SER B 223 LYS B 235 1 13 HELIX 30 30 SER B 260 HIS B 273 1 14 HELIX 31 31 ASP B 280 LEU B 285 5 6 HELIX 32 32 SER B 286 SER B 303 1 18 HELIX 33 33 SER B 317 GLY B 329 1 13 HELIX 34 34 GLY B 329 GLY B 351 1 23 HELIX 35 35 GLY B 360 GLY B 372 1 13 HELIX 36 36 SER B 409 GLU B 417 1 9 SHEET 1 A15 CYS A 166 ILE A 169 0 SHEET 2 A15 TYR A 195 LEU A 198 1 O TYR A 195 N GLY A 167 SHEET 3 A15 THR A 111 SER A 114 1 N ILE A 113 O ALA A 196 SHEET 4 A15 LEU A 218 GLY A 221 1 O THR A 220 N SER A 114 SHEET 5 A15 GLN A 78 LYS A 82 1 N PHE A 81 O VAL A 219 SHEET 6 A15 ILE A 4 ALA A 8 1 N ILE A 7 O TYR A 80 SHEET 7 A15 ALA A 45 SER A 49 1 O ILE A 48 N VAL A 6 SHEET 8 A15 THR A 28 ASN A 32 1 N ILE A 31 O SER A 49 SHEET 9 A15 GLY A 375 SER A 383 -1 O PHE A 376 N GLN A 30 SHEET 10 A15 VAL A 386 ALA A 391 -1 O TRP A 388 N PRO A 380 SHEET 11 A15 SER A 397 LYS A 401 -1 O LEU A 398 N VAL A 389 SHEET 12 A15 ARG A 355 ALA A 359 1 N VAL A 358 O LYS A 401 SHEET 13 A15 ALA A 252 SER A 256 1 N LEU A 255 O ILE A 357 SHEET 14 A15 MET A 311 SER A 313 1 O ILE A 312 N VAL A 254 SHEET 15 A15 THR A 276 ASP A 278 1 N ARG A 277 O SER A 313 SHEET 1 B 3 ARG A 122 TYR A 125 0 SHEET 2 B 3 TYR A 128 VAL A 131 -1 O PHE A 130 N THR A 123 SHEET 3 B 3 HIS A 134 LEU A 135 -1 O HIS A 134 N VAL A 131 SHEET 1 C15 CYS B 166 ILE B 169 0 SHEET 2 C15 TYR B 195 LEU B 198 1 O TYR B 195 N GLY B 167 SHEET 3 C15 THR B 111 SER B 114 1 N ILE B 113 O ALA B 196 SHEET 4 C15 LEU B 218 GLY B 221 1 O THR B 220 N SER B 114 SHEET 5 C15 VAL B 79 LYS B 82 1 N PHE B 81 O VAL B 219 SHEET 6 C15 ILE B 4 ALA B 8 1 N GLY B 5 O TYR B 80 SHEET 7 C15 ALA B 45 SER B 49 1 O ILE B 48 N VAL B 6 SHEET 8 C15 THR B 28 ASN B 32 1 N ILE B 31 O SER B 49 SHEET 9 C15 GLY B 375 SER B 383 -1 O PHE B 376 N GLN B 30 SHEET 10 C15 VAL B 386 ALA B 391 -1 O TRP B 388 N GLY B 379 SHEET 11 C15 SER B 397 LYS B 401 -1 O LEU B 398 N VAL B 389 SHEET 12 C15 ARG B 355 ALA B 359 1 N VAL B 358 O LYS B 401 SHEET 13 C15 ALA B 252 SER B 256 1 N LEU B 255 O ILE B 357 SHEET 14 C15 MET B 311 SER B 313 1 O ILE B 312 N VAL B 254 SHEET 15 C15 THR B 276 ASP B 278 1 N ARG B 277 O SER B 313 SHEET 1 D 3 ARG B 122 TYR B 125 0 SHEET 2 D 3 TYR B 128 VAL B 131 -1 O PHE B 130 N THR B 123 SHEET 3 D 3 HIS B 134 LEU B 135 -1 O HIS B 134 N VAL B 131 CISPEP 1 GLY A 93 ASN A 94 0 11.72 CISPEP 2 GLY B 93 ASN B 94 0 7.02 CRYST1 254.541 254.541 94.459 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003929 0.002268 0.000000 0.00000 SCALE2 0.000000 0.004536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010587 0.00000