HEADER TRANSFERASE 10-JUL-08 3DR6 TITLE STRUCTURE OF YNCA, A PUTATIVE ACETYLTRANSFERASE FROM SALMONELLA TITLE 2 TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: YNCA; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.3.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 STRAIN: LT2; SOURCE 4 GENE: YNCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ACETYLTRANSFERASE, CSGID TARGET, ESSENTIAL GENE, SALMONELLA KEYWDS 2 TYPHIMURIUM, IDP00086, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS OF INFECTIOUS DISEASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,T.SKARINA,O.ONOPRIYENKO,A.M.EDWARDS,W.F.ANDERSON, AUTHOR 2 A.SAVCHENKO,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 6 15-NOV-23 3DR6 1 REMARK REVDAT 5 30-AUG-23 3DR6 1 REMARK DBREF LINK REVDAT 4 13-JUL-11 3DR6 1 VERSN REVDAT 3 14-JUL-09 3DR6 1 TITLE REVDAT 2 24-FEB-09 3DR6 1 VERSN REVDAT 1 09-SEP-08 3DR6 0 JRNL AUTH A.U.SINGER,T.SKARINA,O.ONOPRIYENKO,A.M.EDWARDS,W.F.ANDERSON, JRNL AUTH 2 A.SAVCHENKO JRNL TITL FUNDED BY THE NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS JRNL TITL 2 DISEASES OF NIH (CONTRACT NUMBER HHSN272200700058C). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 58570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2872 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 811 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4294 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5837 ; 1.386 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 6.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;35.558 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;13.026 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;13.303 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 631 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3346 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2222 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2954 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 618 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 106 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 60 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2694 ; 0.936 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4212 ; 1.341 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1841 ; 2.669 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1625 ; 3.706 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25100 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DR8 CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 5K MME, 0.1 M BIS-TRIS, REMARK 280 CRYOPROTECTED WITH PARATONE-N OIL, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.44900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.11450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.44900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.11450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ASP B 169 REMARK 465 ALA B 170 REMARK 465 CYS B 171 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 CYS C 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 0 CB REMARK 470 ALA B 0 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 0 O HOH A 270 1.91 REMARK 500 O HOH C 2804 O HOH C 2935 2.12 REMARK 500 O HOH A 331 O HOH A 339 2.15 REMARK 500 NH2 ARG B 72 O HOH B 533 2.18 REMARK 500 OE1 GLU C 58 O HOH C 2833 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE C 116 CB MSE C 116 CG 0.218 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN C 92 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 24 -140.76 -120.50 REMARK 500 HIS A 24 -140.80 -120.50 REMARK 500 ALA A 27 71.36 -107.35 REMARK 500 SER A 73 59.64 -93.16 REMARK 500 ALA A 170 39.25 -148.30 REMARK 500 SER B 73 53.36 -96.11 REMARK 500 TRP C 29 55.76 -97.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 2690 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DR8 RELATED DB: PDB REMARK 900 STRUCTURE OF YNCA, A PUTATIVE ACTEYLTRANSFERASE FROM SALMONELLA REMARK 900 TYPHIMURIUM WITH ITS COFACTOR ACETYL-COA DBREF 3DR6 A -2 171 PDB 3DR6 3DR6 -2 171 DBREF 3DR6 B -2 171 PDB 3DR6 3DR6 -2 171 DBREF 3DR6 C -2 171 PDB 3DR6 3DR6 -2 171 SEQRES 1 A 174 SER ASN ALA MSE THR ILE ARG PHE ALA ASP LYS ALA ASP SEQRES 2 A 174 CYS ALA ALA ILE THR GLU ILE TYR ASN HIS ALA VAL LEU SEQRES 3 A 174 HIS THR ALA ALA ILE TRP ASN ASP ARG THR VAL ASP THR SEQRES 4 A 174 ASP ASN ARG LEU ALA TRP TYR GLU ALA ARG GLN LEU LEU SEQRES 5 A 174 GLY TYR PRO VAL LEU VAL SER GLU GLU ASN GLY VAL VAL SEQRES 6 A 174 THR GLY TYR ALA SER PHE GLY ASP TRP ARG SER PHE ASP SEQRES 7 A 174 GLY PHE ARG TYR THR VAL GLU HIS SER VAL TYR VAL HIS SEQRES 8 A 174 PRO ALA HIS GLN GLY LYS GLY LEU GLY ARG LYS LEU LEU SEQRES 9 A 174 SER ARG LEU ILE ASP GLU ALA ARG ARG CYS GLY LYS HIS SEQRES 10 A 174 VAL MSE VAL ALA GLY ILE GLU SER GLN ASN ALA ALA SER SEQRES 11 A 174 ILE ARG LEU HIS HIS SER LEU GLY PHE THR VAL THR ALA SEQRES 12 A 174 GLN MSE PRO GLN VAL GLY VAL LYS PHE GLY ARG TRP LEU SEQRES 13 A 174 ASP LEU THR PHE MSE GLN LEU GLN LEU ASP GLU HIS ALA SEQRES 14 A 174 ALA PRO ASP ALA CYS SEQRES 1 B 174 SER ASN ALA MSE THR ILE ARG PHE ALA ASP LYS ALA ASP SEQRES 2 B 174 CYS ALA ALA ILE THR GLU ILE TYR ASN HIS ALA VAL LEU SEQRES 3 B 174 HIS THR ALA ALA ILE TRP ASN ASP ARG THR VAL ASP THR SEQRES 4 B 174 ASP ASN ARG LEU ALA TRP TYR GLU ALA ARG GLN LEU LEU SEQRES 5 B 174 GLY TYR PRO VAL LEU VAL SER GLU GLU ASN GLY VAL VAL SEQRES 6 B 174 THR GLY TYR ALA SER PHE GLY ASP TRP ARG SER PHE ASP SEQRES 7 B 174 GLY PHE ARG TYR THR VAL GLU HIS SER VAL TYR VAL HIS SEQRES 8 B 174 PRO ALA HIS GLN GLY LYS GLY LEU GLY ARG LYS LEU LEU SEQRES 9 B 174 SER ARG LEU ILE ASP GLU ALA ARG ARG CYS GLY LYS HIS SEQRES 10 B 174 VAL MSE VAL ALA GLY ILE GLU SER GLN ASN ALA ALA SER SEQRES 11 B 174 ILE ARG LEU HIS HIS SER LEU GLY PHE THR VAL THR ALA SEQRES 12 B 174 GLN MSE PRO GLN VAL GLY VAL LYS PHE GLY ARG TRP LEU SEQRES 13 B 174 ASP LEU THR PHE MSE GLN LEU GLN LEU ASP GLU HIS ALA SEQRES 14 B 174 ALA PRO ASP ALA CYS SEQRES 1 C 174 SER ASN ALA MSE THR ILE ARG PHE ALA ASP LYS ALA ASP SEQRES 2 C 174 CYS ALA ALA ILE THR GLU ILE TYR ASN HIS ALA VAL LEU SEQRES 3 C 174 HIS THR ALA ALA ILE TRP ASN ASP ARG THR VAL ASP THR SEQRES 4 C 174 ASP ASN ARG LEU ALA TRP TYR GLU ALA ARG GLN LEU LEU SEQRES 5 C 174 GLY TYR PRO VAL LEU VAL SER GLU GLU ASN GLY VAL VAL SEQRES 6 C 174 THR GLY TYR ALA SER PHE GLY ASP TRP ARG SER PHE ASP SEQRES 7 C 174 GLY PHE ARG TYR THR VAL GLU HIS SER VAL TYR VAL HIS SEQRES 8 C 174 PRO ALA HIS GLN GLY LYS GLY LEU GLY ARG LYS LEU LEU SEQRES 9 C 174 SER ARG LEU ILE ASP GLU ALA ARG ARG CYS GLY LYS HIS SEQRES 10 C 174 VAL MSE VAL ALA GLY ILE GLU SER GLN ASN ALA ALA SER SEQRES 11 C 174 ILE ARG LEU HIS HIS SER LEU GLY PHE THR VAL THR ALA SEQRES 12 C 174 GLN MSE PRO GLN VAL GLY VAL LYS PHE GLY ARG TRP LEU SEQRES 13 C 174 ASP LEU THR PHE MSE GLN LEU GLN LEU ASP GLU HIS ALA SEQRES 14 C 174 ALA PRO ASP ALA CYS MODRES 3DR6 MSE A 1 MET SELENOMETHIONINE MODRES 3DR6 MSE A 116 MET SELENOMETHIONINE MODRES 3DR6 MSE A 142 MET SELENOMETHIONINE MODRES 3DR6 MSE A 158 MET SELENOMETHIONINE MODRES 3DR6 MSE B 1 MET SELENOMETHIONINE MODRES 3DR6 MSE B 116 MET SELENOMETHIONINE MODRES 3DR6 MSE B 142 MET SELENOMETHIONINE MODRES 3DR6 MSE B 158 MET SELENOMETHIONINE MODRES 3DR6 MSE C 1 MET SELENOMETHIONINE MODRES 3DR6 MSE C 116 MET SELENOMETHIONINE MODRES 3DR6 MSE C 142 MET SELENOMETHIONINE MODRES 3DR6 MSE C 158 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 116 8 HET MSE A 142 8 HET MSE A 158 8 HET MSE B 1 8 HET MSE B 116 16 HET MSE B 142 8 HET MSE B 158 8 HET MSE C 1 8 HET MSE C 116 8 HET MSE C 142 8 HET MSE C 158 8 HET EDO A 172 4 HET EDO A 173 4 HET EDO A 174 4 HET EDO B 172 4 HET EDO B 173 4 HET EDO C 172 4 HET GOL C2690 6 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *811(H2 O) HELIX 1 1 ASP A 7 ALA A 9 5 3 HELIX 2 2 ASP A 10 HIS A 24 1 15 HELIX 3 3 ASP A 35 GLY A 50 1 16 HELIX 4 4 PHE A 74 ARG A 78 5 5 HELIX 5 5 PRO A 89 GLN A 92 5 4 HELIX 6 6 GLY A 95 CYS A 111 1 17 HELIX 7 7 ASN A 124 LEU A 134 1 11 HELIX 8 8 ASP B 7 ALA B 9 5 3 HELIX 9 9 ASP B 10 THR B 25 1 16 HELIX 10 10 ASP B 35 LEU B 49 1 15 HELIX 11 11 PHE B 74 ARG B 78 5 5 HELIX 12 12 PRO B 89 GLN B 92 5 4 HELIX 13 13 GLY B 95 CYS B 111 1 17 HELIX 14 14 ASN B 124 LEU B 134 1 11 HELIX 15 15 ASP C 7 ALA C 9 5 3 HELIX 16 16 ASP C 10 THR C 25 1 16 HELIX 17 17 ASP C 35 GLY C 50 1 16 HELIX 18 18 PHE C 74 ARG C 78 5 5 HELIX 19 19 GLY C 95 CYS C 111 1 17 HELIX 20 20 ASN C 124 SER C 133 1 10 SHEET 1 A 7 THR A 2 PHE A 5 0 SHEET 2 A 7 VAL A 53 GLU A 58 -1 O VAL A 55 N ARG A 4 SHEET 3 A 7 VAL A 61 ASP A 70 -1 O ALA A 66 N LEU A 54 SHEET 4 A 7 THR A 80 VAL A 87 -1 O GLU A 82 N GLY A 69 SHEET 5 A 7 VAL A 115 GLU A 121 1 O VAL A 117 N VAL A 81 SHEET 6 A 7 ARG A 151 GLN A 161 -1 O THR A 156 N ILE A 120 SHEET 7 A 7 THR A 137 LYS A 148 -1 N MSE A 142 O LEU A 155 SHEET 1 B 7 THR B 2 PHE B 5 0 SHEET 2 B 7 VAL B 53 GLU B 58 -1 O VAL B 55 N ARG B 4 SHEET 3 B 7 VAL B 61 ASP B 70 -1 O ALA B 66 N LEU B 54 SHEET 4 B 7 THR B 80 VAL B 87 -1 O SER B 84 N SER B 67 SHEET 5 B 7 VAL B 115 GLU B 121 1 O VAL B 117 N VAL B 81 SHEET 6 B 7 ARG B 151 GLN B 161 -1 O THR B 156 N ILE B 120 SHEET 7 B 7 THR B 137 LYS B 148 -1 N MSE B 142 O LEU B 155 SHEET 1 C 7 THR C 2 PHE C 5 0 SHEET 2 C 7 VAL C 53 GLU C 58 -1 O VAL C 55 N ARG C 4 SHEET 3 C 7 VAL C 61 ASP C 70 -1 O ALA C 66 N LEU C 54 SHEET 4 C 7 THR C 80 VAL C 87 -1 O TYR C 86 N TYR C 65 SHEET 5 C 7 VAL C 115 GLU C 121 1 O VAL C 117 N VAL C 81 SHEET 6 C 7 ARG C 151 GLN C 161 -1 O THR C 156 N ILE C 120 SHEET 7 C 7 THR C 137 LYS C 148 -1 N MSE C 142 O LEU C 155 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ATHR A 2 1555 1555 1.33 LINK C MSE A 1 N BTHR A 2 1555 1555 1.33 LINK C VAL A 115 N MSE A 116 1555 1555 1.32 LINK C MSE A 116 N VAL A 117 1555 1555 1.32 LINK C GLN A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N PRO A 143 1555 1555 1.36 LINK C PHE A 157 N MSE A 158 1555 1555 1.32 LINK C MSE A 158 N GLN A 159 1555 1555 1.32 LINK C ALA B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C VAL B 115 N AMSE B 116 1555 1555 1.33 LINK C VAL B 115 N BMSE B 116 1555 1555 1.34 LINK C AMSE B 116 N VAL B 117 1555 1555 1.34 LINK C BMSE B 116 N VAL B 117 1555 1555 1.33 LINK C GLN B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N PRO B 143 1555 1555 1.34 LINK C PHE B 157 N MSE B 158 1555 1555 1.32 LINK C MSE B 158 N GLN B 159 1555 1555 1.33 LINK C MSE C 1 N THR C 2 1555 1555 1.33 LINK C VAL C 115 N MSE C 116 1555 1555 1.35 LINK C MSE C 116 N VAL C 117 1555 1555 1.31 LINK C AGLN C 141 N MSE C 142 1555 1555 1.33 LINK C BGLN C 141 N MSE C 142 1555 1555 1.33 LINK C MSE C 142 N PRO C 143 1555 1555 1.35 LINK C PHE C 157 N MSE C 158 1555 1555 1.32 LINK C MSE C 158 N GLN C 159 1555 1555 1.32 SITE 1 AC1 1 PHE B 149 SITE 1 AC2 7 HIS A 20 HIS A 24 ARG A 78 CYS A 111 SITE 2 AC2 7 GLY A 112 LYS A 113 ALA A 170 SITE 1 AC3 6 TYR B 18 ARG B 39 TRP B 42 TYR B 65 SITE 2 AC3 6 SER B 84 TYR B 86 SITE 1 AC4 1 PRO C 89 SITE 1 AC5 5 THR A 25 GLU A 121 GLN A 123 ASN A 124 SITE 2 AC5 5 HIS C 165 SITE 1 AC6 2 ARG A 4 PHE A 5 SITE 1 AC7 7 ALA C 26 ALA C 27 ILE C 28 TRP C 29 SITE 2 AC7 7 ARG C 72 PHE C 74 GLY C 119 CRYST1 162.898 70.229 59.157 90.00 102.64 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006139 0.000000 0.001377 0.00000 SCALE2 0.000000 0.014239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017324 0.00000