HEADER GENE REGULATION 15-JUL-08 3DTE TITLE CRYSTAL STRUCTURE OF THE IRRE PROTEIN, A CENTRAL REGULATOR OF DNA TITLE 2 DAMAGE REPAIR IN DEINOCOCCACEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRRE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS DESERTI; SOURCE 3 ORGANISM_TAXID: 310783; SOURCE 4 GENE: IRRE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-TEV KEYWDS DEINOCOCCUS, RADIOTOLERANCE, GENE REGULATION, METALLOPEPTIDASE, IRRE EXPDTA X-RAY DIFFRACTION AUTHOR A.VUJICIC-ZAGAR,R.DULERMO,M.LE GORREC,F.VANNIER,P.SERVANT,S.SOMMER, AUTHOR 2 A.DE GROOT,L.SERRE REVDAT 3 13-NOV-24 3DTE 1 SEQADV LINK REVDAT 2 24-MAR-09 3DTE 1 JRNL REVDAT 1 10-FEB-09 3DTE 0 JRNL AUTH A.VUJICIC-ZAGAR,R.DULERMO,M.LE GORREC,F.VANNIER,P.SERVANT, JRNL AUTH 2 S.SOMMER,A.DE GROOT,L.SERRE JRNL TITL CRYSTAL STRUCTURE OF THE IRRE PROTEIN, A CENTRAL REGULATOR JRNL TITL 2 OF DNA DAMAGE REPAIR IN DEINOCOCCACEAE JRNL REF J.MOL.BIOL. V. 386 704 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19150362 JRNL DOI 10.1016/J.JMB.2008.12.062 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 456 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 634 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1873 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.42000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.676 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1912 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2602 ; 1.453 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 4.300 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;38.414 ;22.289 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;15.483 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.485 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1467 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 834 ; 0.274 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1329 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 59 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1267 ; 1.614 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1975 ; 2.232 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 708 ; 1.561 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 627 ; 2.184 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9581 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M POTASSIUM FLUORIDE, REMARK 280 PH 7.5, VAPOR DIFFUSION, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.02650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.40650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.02650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.40650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 172.10600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 180 REMARK 465 GLU A 181 REMARK 465 ASP A 182 REMARK 465 GLU A 183 REMARK 465 GLY A 184 REMARK 465 GLU A 185 REMARK 465 GLY A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 188 REMARK 465 ALA A 264 REMARK 465 GLY A 265 REMARK 465 ARG A 266 REMARK 465 SER A 267 REMARK 465 GLU A 268 REMARK 465 PRO A 269 REMARK 465 ASP A 270 REMARK 465 ALA A 271 REMARK 465 ASP A 272 REMARK 465 LYS A 273 REMARK 465 PRO A 274 REMARK 465 GLU A 275 REMARK 465 ALA A 276 REMARK 465 PRO A 277 REMARK 465 GLY A 278 REMARK 465 ASP A 279 REMARK 465 GLN A 280 REMARK 465 SER A 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 178 O GLU A 191 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 46 C THR A 47 N -0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 201 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ALA A 201 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 51 29.66 -142.41 REMARK 500 LEU A 223 -75.45 -43.84 REMARK 500 GLN A 231 158.95 173.57 REMARK 500 SER A 233 -154.24 -150.78 REMARK 500 GLU A 252 -159.43 -144.02 REMARK 500 ARG A 253 81.24 -54.80 REMARK 500 GLN A 254 -5.37 79.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 178 ARG A 179 147.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DTI RELATED DB: PDB REMARK 900 RELATED ID: 3DTK RELATED DB: PDB DBREF 3DTE A 1 281 UNP B5B9W8 B5B9W8_9DEIO 1 281 SEQADV 3DTE MSE A -19 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE GLY A -18 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE SER A -17 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE SER A -16 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE HIS A -15 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE HIS A -14 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE HIS A -13 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE HIS A -12 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE HIS A -11 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE HIS A -10 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE SER A -9 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE SER A -8 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE GLY A -7 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE GLU A -6 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE ASN A -5 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE LEU A -4 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE TYR A -3 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE PHE A -2 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE GLN A -1 UNP B5B9W8 EXPRESSION TAG SEQADV 3DTE GLY A 0 UNP B5B9W8 EXPRESSION TAG SEQRES 1 A 301 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 301 GLU ASN LEU TYR PHE GLN GLY MSE THR ASP PRO ALA PRO SEQRES 3 A 301 PRO PRO THR ALA LEU ALA ALA ALA LYS ALA ARG MSE ARG SEQRES 4 A 301 GLU LEU ALA ALA SER TYR GLY ALA GLY LEU PRO GLY ARG SEQRES 5 A 301 ASP THR HIS SER LEU MSE HIS GLY LEU ASP GLY ILE THR SEQRES 6 A 301 LEU THR PHE MSE PRO MSE GLY GLN ARG ASP GLY ALA TYR SEQRES 7 A 301 ASP PRO GLU HIS HIS VAL ILE LEU ILE ASN SER GLN VAL SEQRES 8 A 301 ARG PRO GLU ARG GLN ARG PHE THR LEU ALA HIS GLU ILE SEQRES 9 A 301 SER HIS ALA LEU LEU LEU GLY ASP ASP ASP LEU LEU SER SEQRES 10 A 301 ASP LEU HIS ASP GLU TYR GLU GLY ASP ARG LEU GLU GLN SEQRES 11 A 301 VAL ILE GLU THR LEU CYS ASN VAL GLY ALA ALA ALA LEU SEQRES 12 A 301 LEU MSE PRO ALA GLU LEU ILE ASP ASP LEU LEU THR ARG SEQRES 13 A 301 PHE GLY PRO THR GLY ARG ALA LEU ALA GLU LEU ALA ARG SEQRES 14 A 301 ARG ALA ASP VAL SER ALA THR SER ALA LEU TYR ALA LEU SEQRES 15 A 301 ALA GLU ARG THR ALA PRO PRO VAL ILE TYR ALA VAL CYS SEQRES 16 A 301 ALA LEU SER ARG GLN GLU ASP GLU GLY GLU GLY GLY GLY SEQRES 17 A 301 ALA LYS GLU LEU THR VAL ARG ALA SER SER ALA SER ALA SEQRES 18 A 301 GLY VAL LYS TYR SER LEU SER ALA GLY THR PRO VAL PRO SEQRES 19 A 301 ASP ASP HIS PRO ALA ALA LEU ALA LEU ASP THR ARG LEU SEQRES 20 A 301 PRO LEU ALA GLN ASP SER TYR VAL PRO PHE ARG SER GLY SEQRES 21 A 301 ARG ARG MSE PRO ALA TYR VAL ASP ALA PHE PRO GLU ARG SEQRES 22 A 301 GLN ARG VAL LEU VAL SER PHE ALA LEU PRO ALA GLY ARG SEQRES 23 A 301 SER GLU PRO ASP ALA ASP LYS PRO GLU ALA PRO GLY ASP SEQRES 24 A 301 GLN SER MODRES 3DTE MSE A 18 MET SELENOMETHIONINE MODRES 3DTE MSE A 38 MET SELENOMETHIONINE MODRES 3DTE MSE A 49 MET SELENOMETHIONINE MODRES 3DTE MSE A 51 MET SELENOMETHIONINE MODRES 3DTE MSE A 125 MET SELENOMETHIONINE MODRES 3DTE MSE A 243 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 38 8 HET MSE A 49 8 HET MSE A 51 8 HET MSE A 125 8 HET MSE A 243 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 HOH *49(H2 O) HELIX 1 1 THR A 9 GLY A 28 1 20 HELIX 2 2 ASP A 33 GLY A 40 1 8 HELIX 3 3 ARG A 72 ASP A 92 1 21 HELIX 4 4 ASP A 92 TYR A 103 1 12 HELIX 5 5 GLU A 104 MSE A 125 1 22 HELIX 6 6 PRO A 126 GLY A 138 1 13 HELIX 7 7 THR A 140 ASP A 152 1 13 HELIX 8 8 SER A 154 ARG A 165 1 12 HELIX 9 9 HIS A 217 ARG A 226 1 10 SHEET 1 A 3 THR A 45 MSE A 49 0 SHEET 2 A 3 VAL A 64 ASN A 68 1 O ILE A 65 N THR A 45 SHEET 3 A 3 GLY A 56 ASP A 59 -1 N ALA A 57 O LEU A 66 SHEET 1 B 6 PRO A 212 VAL A 213 0 SHEET 2 B 6 LEU A 192 ALA A 199 -1 N LEU A 192 O VAL A 213 SHEET 3 B 6 VAL A 170 LEU A 177 -1 N TYR A 172 O SER A 198 SHEET 4 B 6 ARG A 255 ALA A 261 -1 O PHE A 260 N ILE A 171 SHEET 5 B 6 ARG A 242 PRO A 251 -1 N TYR A 246 O ALA A 261 SHEET 6 B 6 LEU A 229 PRO A 236 -1 N VAL A 235 O MSE A 243 LINK C ARG A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N ARG A 19 1555 1555 1.33 LINK C LEU A 37 N MSE A 38 1555 1555 1.32 LINK C MSE A 38 N HIS A 39 1555 1555 1.33 LINK C PHE A 48 N MSE A 49 1555 1555 1.32 LINK C MSE A 49 N PRO A 50 1555 1555 1.35 LINK C PRO A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N GLY A 52 1555 1555 1.33 LINK C LEU A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N PRO A 126 1555 1555 1.34 LINK C ARG A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N PRO A 244 1555 1555 1.34 CRYST1 86.053 52.813 64.910 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015406 0.00000