HEADER IMMUNE SYSTEM 17-JUL-08 3DUR TITLE CRYSTAL STRUCTURE OF SAG173-04 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY FV FRAGMENT SAG173-04; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: VARIABLE REGION FRAGMENT (FV); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IG-LIKE PROTEIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSFJ8; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY, KDO, TWINNING, PSEUDO-SYMMETRY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,R.J.BLACKLER,S.GERSTENBRUCH,P.KOSMA,S.MULLER-LOENNIES, AUTHOR 2 H.BRADE,S.V.EVANS REVDAT 3 30-OCT-24 3DUR 1 HETSYN REVDAT 2 29-JUL-20 3DUR 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 02-DEC-08 3DUR 0 JRNL AUTH C.L.BROOKS,R.J.BLACKLER,S.GERSTENBRUCH,P.KOSMA, JRNL AUTH 2 S.MULLER-LOENNIES,H.BRADE,S.V.EVANS JRNL TITL PSEUDO-SYMMETRY AND TWINNING IN CRYSTALS OF HOMOLOGOUS JRNL TITL 2 ANTIBODY FV FRAGMENTS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 1250 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 19018101 JRNL DOI 10.1107/S0907444908033453 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 35350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8980 - 4.3590 0.86 2490 124 0.1830 0.2150 REMARK 3 2 4.3590 - 3.4660 0.90 2488 136 0.1590 0.2080 REMARK 3 3 3.4660 - 3.0300 0.93 2544 141 0.1800 0.2420 REMARK 3 4 3.0300 - 2.7530 0.94 2558 137 0.1860 0.2900 REMARK 3 5 2.7530 - 2.5560 0.95 2585 149 0.1880 0.2670 REMARK 3 6 2.5560 - 2.4060 0.96 2552 163 0.1870 0.2720 REMARK 3 7 2.4060 - 2.2860 0.96 2631 126 0.1850 0.2290 REMARK 3 8 2.2860 - 2.1860 0.97 2640 117 0.1640 0.2710 REMARK 3 9 2.1860 - 2.1020 0.97 2624 121 0.1640 0.2330 REMARK 3 10 2.1020 - 2.0300 0.98 2606 155 0.1580 0.2460 REMARK 3 11 2.0300 - 1.9660 0.98 2611 148 0.1600 0.2190 REMARK 3 12 1.9660 - 1.9100 0.98 2622 136 0.1810 0.2750 REMARK 3 13 1.9100 - 1.8600 0.98 2612 134 0.2070 0.2880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 47.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.32000 REMARK 3 B22 (A**2) : 2.43800 REMARK 3 B33 (A**2) : -5.75900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3754 REMARK 3 ANGLE : 1.821 5062 REMARK 3 CHIRALITY : 0.141 542 REMARK 3 PLANARITY : 0.007 636 REMARK 3 DIHEDRAL : 19.520 1338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC BLUE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.4SSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35356 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 4.680 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.38 REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MGCL2, PH 8.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.38000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.38000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER C 25 O HOH C 215 2.08 REMARK 500 O HOH B 123 O HOH B 228 2.14 REMARK 500 O HOH A 369 O HOH A 394 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 403 O HOH C 117 3545 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 105 CB - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 ARG D 19 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG D 19 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 LEU D 76 CB - CG - CD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 THR D 105 CB - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -37.53 72.58 REMARK 500 SER A 52 -0.16 -140.92 REMARK 500 ALA A 84 166.48 174.80 REMARK 500 LEU A 94 -145.56 52.55 REMARK 500 ALA C 15 131.60 -39.84 REMARK 500 ALA C 51 -36.34 74.11 REMARK 500 LEU C 94 -139.12 52.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 107 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 79 OE1 REMARK 620 2 HOH A 313 O 89.7 REMARK 620 3 HOH A 332 O 90.7 93.1 REMARK 620 4 HOH A 335 O 85.5 93.1 172.7 REMARK 620 5 HOH A 357 O 88.7 176.4 90.2 83.6 REMARK 620 6 HOH A 388 O 179.5 90.4 89.9 94.0 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 108 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 321 O REMARK 620 2 HOH A 331 O 77.4 REMARK 620 3 GLN C 79 OE1 91.6 168.8 REMARK 620 4 HOH C 153 O 79.4 88.7 91.0 REMARK 620 5 HOH C 217 O 90.7 91.7 86.6 169.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DUS RELATED DB: PDB REMARK 900 RELATED ID: 3DUU RELATED DB: PDB DBREF 3DUR A 1 106 PDB 3DUR 3DUR 1 106 DBREF 3DUR C 1 106 PDB 3DUR 3DUR 1 106 DBREF 3DUR B 1 111 PDB 3DUR 3DUR 1 111 DBREF 3DUR D 1 111 PDB 3DUR 3DUR 1 111 SEQRES 1 A 112 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 112 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 112 GLN SER LEU PHE LYS SER ARG ASN GLN LYS ASN TYR LEU SEQRES 4 A 112 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 112 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 112 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 112 LEU THR ILE ASN GLY VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 112 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 112 GLY GLY THR LYS LEU GLU LEU LYS SEQRES 1 B 121 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 121 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 121 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 121 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 B 121 VAL LYS GLY ARG PHE SER ILE SER ARG ASP ASN SER GLN SEQRES 7 B 121 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 121 ASP SER ALA THR TYR TYR CYS ALA ARG ASP GLY TYR TYR SEQRES 9 B 121 ALA ASP ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL SEQRES 10 B 121 THR VAL SER SER SEQRES 1 C 112 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 C 112 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 C 112 GLN SER LEU PHE LYS SER ARG ASN GLN LYS ASN TYR LEU SEQRES 4 C 112 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 C 112 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 C 112 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 C 112 LEU THR ILE ASN GLY VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 C 112 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 C 112 GLY GLY THR LYS LEU GLU LEU LYS SEQRES 1 D 121 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 D 121 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 D 121 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 D 121 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 D 121 VAL LYS GLY ARG PHE SER ILE SER ARG ASP ASN SER GLN SEQRES 7 D 121 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 D 121 ASP SER ALA THR TYR TYR CYS ALA ARG ASP GLY TYR TYR SEQRES 9 D 121 ALA ASP ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL SEQRES 10 D 121 THR VAL SER SER HET KDO A 303 16 HET MG A 107 1 HET PG4 B 112 13 HET MG C 108 1 HET KDO D 303 16 HET PG4 D 304 13 HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM MG MAGNESIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 5 KDO 2(C8 H14 O8) FORMUL 6 MG 2(MG 2+) FORMUL 7 PG4 2(C8 H18 O5) FORMUL 11 HOH *456(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 THR B 28 TYR B 32 5 5 HELIX 3 3 ASN B 52A GLY B 52E 5 5 HELIX 4 4 ARG B 83 SER B 87 5 5 HELIX 5 5 GLN C 79 LEU C 83 5 5 HELIX 6 6 THR D 28 TYR D 32 5 5 HELIX 7 7 ASN D 52A GLY D 52E 5 5 HELIX 8 8 ARG D 83 SER D 87 5 5 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 LYS A 18 SER A 25 -1 O LYS A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ASN A 76 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 65 O THR A 72 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N GLN A 38 O VAL A 85 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 2 PHE A 30 LYS A 30A 0 SHEET 2 D 2 LYS A 30F ASN A 31 -1 O LYS A 30F N LYS A 30A SHEET 1 E 4 GLN B 3 SER B 7 0 SHEET 2 E 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 E 4 ILE B 75 MET B 80 -1 O LEU B 78 N LEU B 20 SHEET 4 E 4 PHE B 65 ASP B 70 -1 N SER B 66 O GLN B 79 SHEET 1 F 6 LEU B 11 VAL B 12 0 SHEET 2 F 6 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 F 6 ALA B 88 ASP B 95 -1 N TYR B 90 O THR B 105 SHEET 4 F 6 TYR B 33 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 F 6 GLU B 46 ILE B 51 -1 O LEU B 48 N TRP B 36 SHEET 6 F 6 THR B 55 TYR B 57 -1 O GLU B 56 N PHE B 50 SHEET 1 G 4 LEU B 11 VAL B 12 0 SHEET 2 G 4 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 G 4 ALA B 88 ASP B 95 -1 N TYR B 90 O THR B 105 SHEET 4 G 4 TYR B 100E TRP B 101 -1 O TYR B 100E N ARG B 94 SHEET 1 H 4 MET C 4 SER C 7 0 SHEET 2 H 4 LYS C 18 SER C 25 -1 O LYS C 24 N THR C 5 SHEET 3 H 4 ASP C 70 ASN C 76 -1 O ILE C 75 N VAL C 19 SHEET 4 H 4 PHE C 62 SER C 67 -1 N THR C 63 O THR C 74 SHEET 1 I 6 SER C 10 SER C 14 0 SHEET 2 I 6 THR C 101 LYS C 106 1 O GLU C 104 N LEU C 11 SHEET 3 I 6 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 103 SHEET 4 I 6 LEU C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 I 6 LYS C 45 TYR C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 I 6 THR C 53 ARG C 54 -1 O THR C 53 N TYR C 49 SHEET 1 J 4 SER C 10 SER C 14 0 SHEET 2 J 4 THR C 101 LYS C 106 1 O GLU C 104 N LEU C 11 SHEET 3 J 4 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 103 SHEET 4 J 4 THR C 96 PHE C 97 -1 O THR C 96 N GLN C 90 SHEET 1 K 2 PHE C 30 LYS C 30A 0 SHEET 2 K 2 LYS C 30F ASN C 31 -1 O LYS C 30F N LYS C 30A SHEET 1 L 4 GLN D 3 SER D 7 0 SHEET 2 L 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 L 4 ILE D 75 MET D 80A-1 O MET D 80A N LEU D 18 SHEET 4 L 4 PHE D 65 ASP D 70 -1 N SER D 66 O GLN D 79 SHEET 1 M 6 GLY D 10 VAL D 12 0 SHEET 2 M 6 THR D 105 VAL D 109 1 O THR D 108 N GLY D 10 SHEET 3 M 6 ALA D 88 ASP D 95 -1 N TYR D 90 O THR D 105 SHEET 4 M 6 TYR D 33 GLN D 39 -1 N VAL D 37 O TYR D 91 SHEET 5 M 6 GLU D 46 ILE D 51 -1 O LEU D 48 N TRP D 36 SHEET 6 M 6 THR D 55 TYR D 57 -1 O GLU D 56 N PHE D 50 SHEET 1 N 4 GLY D 10 VAL D 12 0 SHEET 2 N 4 THR D 105 VAL D 109 1 O THR D 108 N GLY D 10 SHEET 3 N 4 ALA D 88 ASP D 95 -1 N TYR D 90 O THR D 105 SHEET 4 N 4 TYR D 100E TRP D 101 -1 O TYR D 100E N ARG D 94 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 2 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 3 CYS C 23 CYS C 88 1555 1555 2.03 SSBOND 4 CYS D 22 CYS D 92 1555 1555 2.03 LINK OE1 GLN A 79 MG MG A 107 1555 1555 2.14 LINK MG MG A 107 O HOH A 313 1555 1555 2.13 LINK MG MG A 107 O HOH A 332 1555 1555 2.26 LINK MG MG A 107 O HOH A 335 1555 1555 2.13 LINK MG MG A 107 O HOH A 357 1555 1555 2.41 LINK MG MG A 107 O HOH A 388 1555 1555 2.19 LINK O HOH A 321 MG MG C 108 1555 1555 2.29 LINK O HOH A 331 MG MG C 108 1555 1555 2.23 LINK OE1 GLN C 79 MG MG C 108 1555 1555 2.14 LINK MG MG C 108 O HOH C 153 1555 1555 2.06 LINK MG MG C 108 O HOH C 217 1555 1555 2.14 CISPEP 1 SER A 7 PRO A 8 0 -5.85 CISPEP 2 SER C 7 PRO C 8 0 -7.81 CRYST1 70.760 72.190 85.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011747 0.00000