HEADER IMMUNE SYSTEM 17-JUL-08 3DUS TITLE CRYSTAL STRUCTURE OF SAG506-01, ORTHORHOMBIC, TWINNED, CRYSTAL 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY FV FRAGMENT SAG506-01; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: VARIABLE REGION FRAGMENT (FV); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IG-LIKE PROTEIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSFJ8; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY, KDO, TWINNING, PSEUDO-SYMMETRY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,R.J.BLACKLER,S.GERSTENBRUCH,P.KOSMA,S.MULLER-LOENNIES, AUTHOR 2 H.BRADE,S.V.EVANS REVDAT 3 13-NOV-24 3DUS 1 HETSYN REVDAT 2 29-JUL-20 3DUS 1 COMPND REMARK HETNAM SITE REVDAT 1 02-DEC-08 3DUS 0 JRNL AUTH C.L.BROOKS,R.J.BLACKLER,S.GERSTENBRUCH,P.KOSMA, JRNL AUTH 2 S.MULLER-LOENNIES,H.BRADE,S.V.EVANS JRNL TITL PSEUDO-SYMMETRY AND TWINNING IN CRYSTALS OF HOMOLOGOUS JRNL TITL 2 ANTIBODY FV FRAGMENTS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 1250 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 19018101 JRNL DOI 10.1107/S0907444908033453 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 33049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8120 - 4.9890 0.98 1965 130 0.1950 0.1900 REMARK 3 2 4.9890 - 3.9700 0.98 1878 119 0.1690 0.2080 REMARK 3 3 3.9700 - 3.4710 0.98 1884 122 0.2040 0.2270 REMARK 3 4 3.4710 - 3.1550 0.98 1842 122 0.2380 0.3120 REMARK 3 5 3.1550 - 2.9300 0.98 1869 118 0.2620 0.3150 REMARK 3 6 2.9300 - 2.7580 0.98 1841 115 0.2920 0.3290 REMARK 3 7 2.7580 - 2.6200 0.98 1807 115 0.2840 0.3010 REMARK 3 8 2.6200 - 2.5060 0.98 1842 121 0.3100 0.3060 REMARK 3 9 2.5060 - 2.4100 0.98 1812 113 0.3130 0.3420 REMARK 3 10 2.4100 - 2.3270 0.98 1840 117 0.3120 0.3740 REMARK 3 11 2.3270 - 2.2540 0.98 1802 120 0.3000 0.3630 REMARK 3 12 2.2540 - 2.1900 0.98 1811 115 0.3160 0.3290 REMARK 3 13 2.1900 - 2.1320 0.98 1793 119 0.3200 0.4070 REMARK 3 14 2.1320 - 2.0800 0.98 1806 117 0.3500 0.3740 REMARK 3 15 2.0800 - 2.0330 0.98 1774 113 0.3750 0.3810 REMARK 3 16 2.0330 - 1.9900 0.98 1767 112 0.3830 0.4050 REMARK 3 17 1.9900 - 1.9500 0.98 1716 112 0.4210 0.4630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 43.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16800 REMARK 3 B22 (A**2) : 6.69700 REMARK 3 B33 (A**2) : -25.09900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: -K,H,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3764 REMARK 3 ANGLE : 0.560 5079 REMARK 3 CHIRALITY : 0.039 548 REMARK 3 PLANARITY : 0.002 637 REMARK 3 DIHEDRAL : 15.558 1341 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.85 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MGCL2, PH 8.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 27F -80.78 -63.49 REMARK 500 ALA A 51 -44.60 78.29 REMARK 500 ALA A 84 166.37 173.52 REMARK 500 LEU A 94 -134.71 55.36 REMARK 500 SER B 25 167.67 175.66 REMARK 500 THR B 28 95.61 -69.04 REMARK 500 ARG B 52 177.90 -59.24 REMARK 500 THR B 82B 77.93 59.49 REMARK 500 ALA B 88 178.25 163.92 REMARK 500 GLU C 17 -166.87 -79.69 REMARK 500 ARG C 27F -85.32 -46.57 REMARK 500 ALA C 51 -45.06 73.92 REMARK 500 LEU C 94 -138.91 63.84 REMARK 500 THR D 28 94.23 -65.23 REMARK 500 ASN D 52A -145.03 -86.20 REMARK 500 LYS D 64 106.44 -44.79 REMARK 500 THR D 82B 81.54 54.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DUR RELATED DB: PDB REMARK 900 RELATED ID: 3DUU RELATED DB: PDB DBREF 3DUS A 1 106 PDB 3DUS 3DUS 1 106 DBREF 3DUS C 1 106 PDB 3DUS 3DUS 1 106 DBREF 3DUS B 1 113 PDB 3DUS 3DUS 1 113 DBREF 3DUS D 1 113 PDB 3DUS 3DUS 1 113 SEQRES 1 A 112 ASP ILE VAL LEU THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 112 SER ALA GLY GLU ARG VAL THR MET SER CYS LYS SER SER SEQRES 3 A 112 GLN SER LEU PHE LYS SER ARG ASN GLN LYS ASN TYR LEU SEQRES 4 A 112 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 112 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 112 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 112 LEU THR ILE ASN GLY VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 112 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 112 GLY GLY THR LYS LEU GLU LEU LYS SEQRES 1 B 121 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 121 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 121 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 121 ASN LYS ALA LYS GLY TYR THR VAL GLU TYR SER ALA SER SEQRES 6 B 121 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 121 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 121 ASP SER ALA THR TYR TYR CYS ALA ARG ASP GLY TYR TYR SEQRES 9 B 121 VAL ASP ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL SEQRES 10 B 121 THR VAL SER SER SEQRES 1 C 112 ASP ILE VAL LEU THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 C 112 SER ALA GLY GLU ARG VAL THR MET SER CYS LYS SER SER SEQRES 3 C 112 GLN SER LEU PHE LYS SER ARG ASN GLN LYS ASN TYR LEU SEQRES 4 C 112 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 C 112 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 C 112 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 C 112 LEU THR ILE ASN GLY VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 C 112 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 C 112 GLY GLY THR LYS LEU GLU LEU LYS SEQRES 1 D 121 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 D 121 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 D 121 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 D 121 ASN LYS ALA LYS GLY TYR THR VAL GLU TYR SER ALA SER SEQRES 6 D 121 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 D 121 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 D 121 ASP SER ALA THR TYR TYR CYS ALA ARG ASP GLY TYR TYR SEQRES 9 D 121 VAL ASP ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL SEQRES 10 D 121 THR VAL SER SER HET KDO A 107 16 HET PG4 B 114 13 HET KDO C 108 16 HET MG C 109 1 HET MG C 110 1 HET PG4 D 114 13 HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM MG MAGNESIUM ION HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 5 KDO 2(C8 H14 O8) FORMUL 6 PG4 2(C8 H18 O5) FORMUL 8 MG 2(MG 2+) FORMUL 11 HOH *240(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 THR B 28 TYR B 32 5 5 HELIX 3 3 GLN C 79 LEU C 83 5 5 HELIX 4 4 THR D 28 TYR D 32 5 5 SHEET 1 A 4 THR A 5 SER A 7 0 SHEET 2 A 4 ARG A 18 LYS A 24 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ASN A 76 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N TYR A 86 O THR A 101 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LYS A 45 N GLN A 37 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N TYR A 86 O THR A 101 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 2 PHE A 27C LYS A 27D 0 SHEET 2 D 2 LYS A 30 ASN A 31 -1 O LYS A 30 N LYS A 27D SHEET 1 E 4 LYS B 3 SER B 7 0 SHEET 2 E 4 SER B 17 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 E 4 ILE B 77 ASN B 82A-1 O LEU B 78 N CYS B 22 SHEET 4 E 4 THR B 68 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 F 6 GLY B 10 VAL B 12 0 SHEET 2 F 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 F 6 ALA B 88 ASP B 95 -1 N TYR B 90 O THR B 107 SHEET 4 F 6 TYR B 33 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 F 6 GLU B 46 ILE B 51 -1 O LEU B 48 N TRP B 36 SHEET 6 F 6 VAL B 57 TYR B 59 -1 O GLU B 58 N PHE B 50 SHEET 1 G 4 GLY B 10 VAL B 12 0 SHEET 2 G 4 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 G 4 ALA B 88 ASP B 95 -1 N TYR B 90 O THR B 107 SHEET 4 G 4 TYR B 102 TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 H 4 LEU C 4 SER C 7 0 SHEET 2 H 4 ARG C 18 SER C 25 -1 O SER C 22 N SER C 7 SHEET 3 H 4 ASP C 70 ASN C 76 -1 O PHE C 71 N CYS C 23 SHEET 4 H 4 PHE C 62 SER C 67 -1 N THR C 63 O THR C 74 SHEET 1 I 6 SER C 10 VAL C 13 0 SHEET 2 I 6 THR C 101 LEU C 105 1 O GLU C 104 N VAL C 13 SHEET 3 I 6 ALA C 84 GLN C 90 -1 N TYR C 86 O THR C 101 SHEET 4 I 6 LEU C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 I 6 LYS C 45 TYR C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 I 6 THR C 53 ARG C 54 -1 O THR C 53 N TYR C 49 SHEET 1 J 4 SER C 10 VAL C 13 0 SHEET 2 J 4 THR C 101 LEU C 105 1 O GLU C 104 N VAL C 13 SHEET 3 J 4 ALA C 84 GLN C 90 -1 N TYR C 86 O THR C 101 SHEET 4 J 4 THR C 96 PHE C 97 -1 O THR C 96 N GLN C 90 SHEET 1 K 2 PHE C 27C LYS C 27D 0 SHEET 2 K 2 LYS C 30 ASN C 31 -1 O LYS C 30 N LYS C 27D SHEET 1 L 4 LYS D 3 SER D 7 0 SHEET 2 L 4 SER D 17 SER D 25 -1 O ALA D 23 N VAL D 5 SHEET 3 L 4 ILE D 77 ASN D 82A-1 O LEU D 78 N CYS D 22 SHEET 4 L 4 THR D 68 ASP D 72 -1 N THR D 68 O GLN D 81 SHEET 1 M 4 GLU D 46 ILE D 51 0 SHEET 2 M 4 TYR D 33 GLN D 39 -1 N ARG D 38 O GLU D 46 SHEET 3 M 4 THR D 89 ASP D 95 -1 O TYR D 91 N VAL D 37 SHEET 4 M 4 TYR D 102 TRP D 103 -1 O TYR D 102 N ARG D 94 SHEET 1 N 4 GLU D 46 ILE D 51 0 SHEET 2 N 4 TYR D 33 GLN D 39 -1 N ARG D 38 O GLU D 46 SHEET 3 N 4 THR D 89 ASP D 95 -1 O TYR D 91 N VAL D 37 SHEET 4 N 4 THR D 107 SER D 108 -1 O THR D 107 N TYR D 90 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 3 CYS C 23 CYS C 88 1555 1555 2.03 SSBOND 4 CYS D 22 CYS D 92 1555 1555 2.03 CISPEP 1 SER A 7 PRO A 8 0 -2.56 CISPEP 2 SER C 7 PRO C 8 0 0.32 CRYST1 72.470 72.560 85.910 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013799 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011640 0.00000