HEADER PROTEIN FIBRIL 18-JUL-08 3DVF TITLE STRUCTURE OF AMYLOIDOGENIC KAPPA 1 BENCE JONES PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOIDOGENIC IMMUNOGLOBULIN LIGHT CHAIN PROTEIN AL-12; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MUTANT OF VK1 O18/O8 GERMLINE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-12A KEYWDS AL, LIGHT CHAIN AMYLOIDOSIS, AMYLOID, IMMUNOGLOBULIN, LIGHT CHAIN, KEYWDS 2 LIGHT CHAIN VARIABLE DOMAIN, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR E.G.RANDLES,J.R.THOMPSON,M.RAMIREZ-ALVARADO REVDAT 3 30-AUG-23 3DVF 1 REMARK REVDAT 2 26-MAY-09 3DVF 1 JRNL REVDAT 1 12-MAY-09 3DVF 0 JRNL AUTH E.G.RANDLES,J.R.THOMPSON,D.J.MARTIN,M.RAMIREZ-ALVARADO JRNL TITL STRUCTURAL ALTERATIONS WITHIN NATIVE AMYLOIDOGENIC JRNL TITL 2 IMMUNOGLOBULIN LIGHT CHAINS. JRNL REF J.MOL.BIOL. V. 389 199 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19361523 JRNL DOI 10.1016/J.JMB.2009.04.010 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 594 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 994 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 938 ; 0.026 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1294 ; 1.967 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 125 ; 7.087 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 41 ;36.554 ;24.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 146 ;16.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;24.057 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 139 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 755 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 420 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 615 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 69 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 614 ; 2.791 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 975 ; 4.052 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 378 ; 5.648 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 319 ; 7.310 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): -38.6280 8.5748 -10.3906 REMARK 3 T TENSOR REMARK 3 T11: 0.0411 T22: -0.2436 REMARK 3 T33: -0.2715 T12: -0.0208 REMARK 3 T13: -0.0398 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 26.6621 L22: 4.3282 REMARK 3 L33: 13.6863 L12: 7.2856 REMARK 3 L13: 12.6040 L23: 3.5536 REMARK 3 S TENSOR REMARK 3 S11: -0.1295 S12: 0.6647 S13: -1.4146 REMARK 3 S21: -0.4175 S22: 0.4345 S23: -0.2431 REMARK 3 S31: -0.7312 S32: 0.3270 S33: -0.3050 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): -30.2244 21.1541 1.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.2011 REMARK 3 T33: -0.2167 T12: -0.0911 REMARK 3 T13: -0.0631 T23: -0.0834 REMARK 3 L TENSOR REMARK 3 L11: 0.5091 L22: 9.0037 REMARK 3 L33: 5.9251 L12: 2.0297 REMARK 3 L13: 0.3634 L23: -0.8241 REMARK 3 S TENSOR REMARK 3 S11: -0.0867 S12: -1.1530 S13: 0.2188 REMARK 3 S21: -0.5197 S22: 0.3690 S23: 0.2423 REMARK 3 S31: -0.5530 S32: 0.6001 S33: -0.2822 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): -42.6856 12.2818 -10.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.1896 T22: -0.3355 REMARK 3 T33: -0.0999 T12: 0.0945 REMARK 3 T13: -0.0832 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 32.6697 L22: 5.5421 REMARK 3 L33: 19.8892 L12: 7.0186 REMARK 3 L13: 20.2406 L23: 7.9255 REMARK 3 S TENSOR REMARK 3 S11: -0.4754 S12: -0.3693 S13: 0.9371 REMARK 3 S21: -0.2442 S22: 0.3649 S23: -0.4762 REMARK 3 S31: -0.9625 S32: -0.7918 S33: 0.1104 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): -51.9908 8.8803 -6.5084 REMARK 3 T TENSOR REMARK 3 T11: -0.0124 T22: 0.0457 REMARK 3 T33: -0.0192 T12: 0.0917 REMARK 3 T13: -0.1293 T23: -0.0975 REMARK 3 L TENSOR REMARK 3 L11: 11.9201 L22: 1.4674 REMARK 3 L33: 34.4346 L12: -1.6676 REMARK 3 L13: 18.7014 L23: -5.1236 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: -0.8544 S13: -0.4118 REMARK 3 S21: -0.2542 S22: 0.1825 S23: 0.6579 REMARK 3 S31: -0.2963 S32: -2.2044 S33: -0.1525 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): -39.2996 7.1242 1.9786 REMARK 3 T TENSOR REMARK 3 T11: -0.1802 T22: -0.3410 REMARK 3 T33: -0.2742 T12: -0.0132 REMARK 3 T13: -0.0172 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.9490 L22: 9.0122 REMARK 3 L33: 8.4160 L12: -4.4043 REMARK 3 L13: -0.1229 L23: -1.0301 REMARK 3 S TENSOR REMARK 3 S11: -0.1875 S12: 0.2089 S13: -0.3858 REMARK 3 S21: 0.0538 S22: 0.1128 S23: 0.6282 REMARK 3 S31: -0.4476 S32: -0.0545 S33: 0.0747 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -33.7739 2.4768 6.6218 REMARK 3 T TENSOR REMARK 3 T11: -0.1643 T22: -0.2721 REMARK 3 T33: -0.2445 T12: -0.0291 REMARK 3 T13: -0.0476 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 31.6251 L22: 10.0719 REMARK 3 L33: 20.6523 L12: -5.1979 REMARK 3 L13: 9.4329 L23: -0.7970 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.5076 S13: -0.6271 REMARK 3 S21: 0.6081 S22: -0.0672 S23: -0.4389 REMARK 3 S31: -0.0190 S32: 0.9595 S33: 0.0472 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): -47.6394 10.6221 3.9022 REMARK 3 T TENSOR REMARK 3 T11: -0.0653 T22: -0.1132 REMARK 3 T33: -0.1831 T12: 0.1308 REMARK 3 T13: 0.0165 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 29.3084 L22: 22.0201 REMARK 3 L33: 14.3372 L12: -17.9264 REMARK 3 L13: 18.0516 L23: -5.0758 REMARK 3 S TENSOR REMARK 3 S11: -0.3314 S12: -0.5462 S13: -0.5173 REMARK 3 S21: -0.4468 S22: -0.3413 S23: 1.0967 REMARK 3 S31: -0.8907 S32: -1.1519 S33: 0.6726 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): -46.4675 11.9153 10.1565 REMARK 3 T TENSOR REMARK 3 T11: -0.0152 T22: -0.0749 REMARK 3 T33: -0.1165 T12: 0.0673 REMARK 3 T13: 0.0751 T23: -0.0841 REMARK 3 L TENSOR REMARK 3 L11: 19.6025 L22: 13.2919 REMARK 3 L33: 46.4189 L12: 1.2033 REMARK 3 L13: 8.6440 L23: 1.6161 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.6400 S13: -0.0317 REMARK 3 S21: 0.7051 S22: 0.1314 S23: 1.4166 REMARK 3 S31: -0.5958 S32: -0.4624 S33: -0.1798 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): -41.8229 17.9228 4.7257 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: -0.1867 REMARK 3 T33: -0.1820 T12: 0.0852 REMARK 3 T13: -0.0857 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 26.1374 L22: 7.7526 REMARK 3 L33: 17.9760 L12: -0.0229 REMARK 3 L13: 18.7991 L23: 5.8603 REMARK 3 S TENSOR REMARK 3 S11: -0.4593 S12: -0.2936 S13: 0.6112 REMARK 3 S21: -0.8803 S22: -0.2750 S23: 0.0294 REMARK 3 S31: -1.3038 S32: -0.3648 S33: 0.7344 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): -39.3753 12.6613 -0.2336 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: -0.2662 REMARK 3 T33: -0.3041 T12: 0.0198 REMARK 3 T13: -0.0292 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.2003 L22: 3.6530 REMARK 3 L33: 7.0159 L12: 0.5331 REMARK 3 L13: 2.9303 L23: 1.8909 REMARK 3 S TENSOR REMARK 3 S11: -0.2656 S12: -0.3894 S13: 0.1184 REMARK 3 S21: -0.2824 S22: -0.0229 S23: 0.2478 REMARK 3 S31: -1.1221 S32: -0.3716 S33: 0.2885 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -49.5669 -0.3724 -7.7109 REMARK 3 T TENSOR REMARK 3 T11: -0.0402 T22: 0.0199 REMARK 3 T33: 0.1027 T12: -0.0367 REMARK 3 T13: -0.1339 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 48.8319 L22: 15.9593 REMARK 3 L33: 25.7022 L12: -5.9418 REMARK 3 L13: -10.1752 L23: 5.9078 REMARK 3 S TENSOR REMARK 3 S11: 0.6214 S12: 0.9263 S13: -2.2308 REMARK 3 S21: -0.3249 S22: -0.7309 S23: 2.2882 REMARK 3 S31: 0.7026 S32: -2.6987 S33: 0.1095 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -30.3776 10.7099 -1.9548 REMARK 3 T TENSOR REMARK 3 T11: 0.0499 T22: -0.0306 REMARK 3 T33: -0.3160 T12: -0.0875 REMARK 3 T13: -0.0410 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 19.4554 L22: 18.2341 REMARK 3 L33: 8.8456 L12: 13.7777 REMARK 3 L13: 1.5957 L23: 5.1167 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.9069 S13: -0.5372 REMARK 3 S21: 0.1359 S22: 0.3875 S23: -1.0956 REMARK 3 S31: -0.9642 S32: 1.5173 S33: -0.3458 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5241 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 77.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 3.660 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.85 REMARK 200 R MERGE FOR SHELL (I) : 3.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Q20 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 923 MM IN 10 MM TRIS-HCL REMARK 280 BUFFER, PH 7.4. MOTHER LIQUOR: 20% W/V POLYETHYLENE GLYCOL 4000, REMARK 280 0.2 M LI2SO4, 0.1 M TRIS BUFFER, PH 6.8, UNDER 60% PARAFFIN OIL REMARK 280 AND 40% SILICON OIL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.75300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.50600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.62950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.38250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.87650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.75300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 51.50600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.38250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.62950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 12.87650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 152 O HOH A 154 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 30 -118.91 45.00 REMARK 500 ALA A 51 -37.39 72.83 REMARK 500 PRO A 95 40.80 -95.95 REMARK 500 GLN A 96 91.34 -63.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q1E RELATED DB: PDB REMARK 900 RELATED ID: 2Q20 RELATED DB: PDB DBREF 3DVF A 1 107 PDB 3DVF 3DVF 1 107 SEQRES 1 A 107 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 A 107 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 A 107 GLN ASP ILE THR ASN HIS LEU ASN TRP TYR GLN GLN LYS SEQRES 4 A 107 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 A 107 ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER GLY ARG SEQRES 6 A 107 GLY SER GLY THR HIS PHE THR PHE THR ILE SER SER LEU SEQRES 7 A 107 GLN PRO ALA ASP ILE ALA THR TYR TYR CYS GLN GLU TYR SEQRES 8 A 107 ASP TYR LEU PRO GLN THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 A 107 GLU ILE LYS FORMUL 2 HOH *95(H2 O) HELIX 1 1 GLN A 79 ILE A 83 5 5 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O THR A 22 N SER A 7 SHEET 3 A 4 HIS A 70 ILE A 75 -1 O PHE A 73 N ILE A 21 SHEET 4 A 4 PHE A 62 GLY A 66 -1 N ARG A 65 O THR A 72 SHEET 1 B 6 SER A 10 ALA A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O GLU A 105 N ALA A 13 SHEET 3 B 6 ALA A 84 GLU A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 ASN A 53 LEU A 54 -1 O ASN A 53 N TYR A 49 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 CISPEP 1 SER A 7 PRO A 8 0 0.45 CISPEP 2 SER A 7 PRO A 8 0 -4.90 CISPEP 3 LEU A 94 PRO A 95 0 -18.49 CISPEP 4 LEU A 94 PRO A 95 0 12.64 CRYST1 81.428 81.428 77.259 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012281 0.007090 0.000000 0.00000 SCALE2 0.000000 0.014181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012943 0.00000