HEADER MOTOR PROTEIN 20-JUL-08 3DVT TITLE BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE PAK1- LC8 TITLE 2 INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 1, CYTOPLASMIC; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: 8 KDA DYNEIN LIGHT CHAIN, CUT UP PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CTP, CDLC1, DDLC1, CG6998; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3*; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS DYNEIN, LC8, LIGHT CHAIN, PIN, DLC1, DYNLL1, MICROTUBULE, MOTOR KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.M.LIGHTCAP,J.C.WILLIAMS REVDAT 3 21-FEB-24 3DVT 1 SEQADV REVDAT 2 13-JUL-11 3DVT 1 VERSN REVDAT 1 12-MAY-09 3DVT 0 JRNL AUTH C.M.LIGHTCAP,S.SUN,J.D.LEAR,U.RODECK,T.POLENOVA,J.C.WILLIAMS JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE PAK1-LC8 JRNL TITL 2 INTERACTION. JRNL REF J.BIOL.CHEM. V. 283 27314 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18650427 JRNL DOI 10.1074/JBC.M800758200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 20970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1149 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1339 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.78000 REMARK 3 B12 (A**2) : 0.15000 REMARK 3 B13 (A**2) : -0.93000 REMARK 3 B23 (A**2) : -0.04000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.487 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4265 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5749 ; 1.501 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;32.206 ;24.791 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 749 ;15.599 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3249 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2541 ; 0.698 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4075 ; 1.341 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1724 ; 2.400 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1674 ; 3.938 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3754 1.7330 -9.1565 REMARK 3 T TENSOR REMARK 3 T11: 0.0300 T22: -0.0301 REMARK 3 T33: -0.1584 T12: 0.0060 REMARK 3 T13: -0.0415 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.4365 L22: 2.5715 REMARK 3 L33: 4.1835 L12: 0.5337 REMARK 3 L13: 0.4362 L23: 0.9123 REMARK 3 S TENSOR REMARK 3 S11: -0.1616 S12: 0.1375 S13: 0.0921 REMARK 3 S21: -0.5341 S22: -0.1001 S23: 0.2600 REMARK 3 S31: -0.3429 S32: -0.2082 S33: 0.2617 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4762 -2.6474 10.4927 REMARK 3 T TENSOR REMARK 3 T11: -0.0960 T22: -0.0766 REMARK 3 T33: -0.1567 T12: -0.0030 REMARK 3 T13: 0.0790 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.7966 L22: 3.1633 REMARK 3 L33: 1.1515 L12: 0.3520 REMARK 3 L13: 0.4192 L23: 0.6609 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.1809 S13: -0.0567 REMARK 3 S21: 0.2059 S22: -0.0382 S23: 0.2437 REMARK 3 S31: 0.0763 S32: -0.0790 S33: 0.0316 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 89 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9037 16.6573 26.2887 REMARK 3 T TENSOR REMARK 3 T11: -0.0056 T22: -0.0164 REMARK 3 T33: -0.1993 T12: 0.0386 REMARK 3 T13: 0.0486 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 2.0106 L22: 2.6950 REMARK 3 L33: 3.8091 L12: 0.7668 REMARK 3 L13: 0.4621 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.1450 S12: -0.2346 S13: 0.1050 REMARK 3 S21: 0.3972 S22: 0.0083 S23: -0.0739 REMARK 3 S31: -0.0913 S32: -0.2216 S33: 0.1367 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 89 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9337 20.7819 6.9454 REMARK 3 T TENSOR REMARK 3 T11: -0.0914 T22: -0.0768 REMARK 3 T33: -0.1710 T12: -0.0276 REMARK 3 T13: 0.0638 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 2.9244 L22: 3.3252 REMARK 3 L33: 1.9346 L12: -0.8412 REMARK 3 L13: -0.8441 L23: -0.3553 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: 0.2095 S13: 0.2459 REMARK 3 S21: -0.2197 S22: -0.0625 S23: -0.1028 REMARK 3 S31: -0.0208 S32: -0.0595 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 5 E 89 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4058 19.9936 -22.4554 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.0300 REMARK 3 T33: -0.1274 T12: 0.0387 REMARK 3 T13: -0.0580 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 2.2350 L22: 4.3537 REMARK 3 L33: 3.8196 L12: 0.5605 REMARK 3 L13: -0.7661 L23: -0.9134 REMARK 3 S TENSOR REMARK 3 S11: 0.1629 S12: -0.0286 S13: -0.1326 REMARK 3 S21: 0.1760 S22: -0.0080 S23: -0.2404 REMARK 3 S31: 0.4944 S32: 0.4548 S33: -0.1549 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 5 F 89 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4971 27.8586 -41.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.0835 REMARK 3 T33: -0.1620 T12: 0.0127 REMARK 3 T13: 0.0244 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.7799 L22: 3.0404 REMARK 3 L33: 6.1194 L12: -0.1805 REMARK 3 L13: 1.6303 L23: -1.4535 REMARK 3 S TENSOR REMARK 3 S11: 0.1789 S12: 0.2999 S13: 0.0247 REMARK 3 S21: -0.2061 S22: -0.1446 S23: -0.1480 REMARK 3 S31: -0.0520 S32: 0.5963 S33: -0.0344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22187 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MGCL2, 100 MM MES, 32% (W/V) PEG REMARK 280 4000, AND 20% XYLITOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ASP A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 MET B -1 REMARK 465 ASP B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 ARG B 4 REMARK 465 MET C -1 REMARK 465 ASP C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASP C 3 REMARK 465 ARG C 4 REMARK 465 MET D -1 REMARK 465 ASP D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ASP D 3 REMARK 465 ARG D 4 REMARK 465 MET E -1 REMARK 465 ASP E 0 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 ASP E 3 REMARK 465 MET F -1 REMARK 465 ASP F 0 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 ASP F 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 LYS C 5 CG CD CE NZ REMARK 470 LYS D 5 CG CD CE NZ REMARK 470 ARG E 4 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 4 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 61 O HOH B 115 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 47 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 147.91 75.82 REMARK 500 ASN B 51 153.70 67.47 REMARK 500 MET C 13 141.57 -177.47 REMARK 500 ASN C 51 148.60 80.05 REMARK 500 ASN C 61 100.88 -160.55 REMARK 500 MET D 13 147.15 -176.46 REMARK 500 ASN D 51 156.03 60.00 REMARK 500 ASN E 51 150.51 73.23 REMARK 500 ASN F 51 141.41 68.33 REMARK 500 ARG F 71 -2.69 78.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DVH RELATED DB: PDB REMARK 900 RELATED ID: 3DVP RELATED DB: PDB DBREF 3DVT A 1 89 UNP Q24117 DYL1_DROME 1 89 DBREF 3DVT B 1 89 UNP Q24117 DYL1_DROME 1 89 DBREF 3DVT C 1 89 UNP Q24117 DYL1_DROME 1 89 DBREF 3DVT D 1 89 UNP Q24117 DYL1_DROME 1 89 DBREF 3DVT E 1 89 UNP Q24117 DYL1_DROME 1 89 DBREF 3DVT F 1 89 UNP Q24117 DYL1_DROME 1 89 SEQADV 3DVT MET A -1 UNP Q24117 EXPRESSION TAG SEQADV 3DVT ASP A 0 UNP Q24117 EXPRESSION TAG SEQADV 3DVT MET B -1 UNP Q24117 EXPRESSION TAG SEQADV 3DVT ASP B 0 UNP Q24117 EXPRESSION TAG SEQADV 3DVT MET C -1 UNP Q24117 EXPRESSION TAG SEQADV 3DVT ASP C 0 UNP Q24117 EXPRESSION TAG SEQADV 3DVT MET D -1 UNP Q24117 EXPRESSION TAG SEQADV 3DVT ASP D 0 UNP Q24117 EXPRESSION TAG SEQADV 3DVT MET E -1 UNP Q24117 EXPRESSION TAG SEQADV 3DVT ASP E 0 UNP Q24117 EXPRESSION TAG SEQADV 3DVT MET F -1 UNP Q24117 EXPRESSION TAG SEQADV 3DVT ASP F 0 UNP Q24117 EXPRESSION TAG SEQRES 1 A 91 MET ASP MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA SEQRES 2 A 91 ASP MET SER GLU GLU MET GLN GLN ASP ALA VAL ASP CYS SEQRES 3 A 91 ALA THR GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP SEQRES 4 A 91 ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR SEQRES 5 A 91 ASN PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SEQRES 6 A 91 SER TYR VAL THR HIS GLU THR ARG HIS PHE ILE TYR PHE SEQRES 7 A 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 B 91 MET ASP MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA SEQRES 2 B 91 ASP MET SER GLU GLU MET GLN GLN ASP ALA VAL ASP CYS SEQRES 3 B 91 ALA THR GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP SEQRES 4 B 91 ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR SEQRES 5 B 91 ASN PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SEQRES 6 B 91 SER TYR VAL THR HIS GLU THR ARG HIS PHE ILE TYR PHE SEQRES 7 B 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 C 91 MET ASP MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA SEQRES 2 C 91 ASP MET SER GLU GLU MET GLN GLN ASP ALA VAL ASP CYS SEQRES 3 C 91 ALA THR GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP SEQRES 4 C 91 ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR SEQRES 5 C 91 ASN PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SEQRES 6 C 91 SER TYR VAL THR HIS GLU THR ARG HIS PHE ILE TYR PHE SEQRES 7 C 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 D 91 MET ASP MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA SEQRES 2 D 91 ASP MET SER GLU GLU MET GLN GLN ASP ALA VAL ASP CYS SEQRES 3 D 91 ALA THR GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP SEQRES 4 D 91 ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR SEQRES 5 D 91 ASN PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SEQRES 6 D 91 SER TYR VAL THR HIS GLU THR ARG HIS PHE ILE TYR PHE SEQRES 7 D 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 E 91 MET ASP MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA SEQRES 2 E 91 ASP MET SER GLU GLU MET GLN GLN ASP ALA VAL ASP CYS SEQRES 3 E 91 ALA THR GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP SEQRES 4 E 91 ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR SEQRES 5 E 91 ASN PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SEQRES 6 E 91 SER TYR VAL THR HIS GLU THR ARG HIS PHE ILE TYR PHE SEQRES 7 E 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 F 91 MET ASP MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA SEQRES 2 F 91 ASP MET SER GLU GLU MET GLN GLN ASP ALA VAL ASP CYS SEQRES 3 F 91 ALA THR GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP SEQRES 4 F 91 ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR SEQRES 5 F 91 ASN PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SEQRES 6 F 91 SER TYR VAL THR HIS GLU THR ARG HIS PHE ILE TYR PHE SEQRES 7 F 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY FORMUL 7 HOH *157(H2 O) HELIX 1 1 SER A 14 TYR A 32 1 19 HELIX 2 2 ILE A 34 ASN A 51 1 18 HELIX 3 3 SER B 14 TYR B 32 1 19 HELIX 4 4 ILE B 34 ASN B 51 1 18 HELIX 5 5 SER C 14 TYR C 32 1 19 HELIX 6 6 ILE C 34 ASN C 51 1 18 HELIX 7 7 SER D 14 TYR D 32 1 19 HELIX 8 8 ILE D 34 ASN D 51 1 18 HELIX 9 9 SER E 14 TYR E 32 1 19 HELIX 10 10 ILE E 34 ASN E 51 1 18 HELIX 11 11 SER F 14 TYR F 32 1 19 HELIX 12 12 ILE F 34 ASN F 51 1 18 SHEET 1 A 8 VAL A 7 ASP A 12 0 SHEET 2 A 8 HIS A 68 LEU A 78 -1 O TYR A 77 N VAL A 7 SHEET 3 A 8 VAL A 81 SER A 88 -1 O LYS A 87 N GLU A 69 SHEET 4 A 8 HIS A 55 TYR A 65 -1 N ILE A 57 O LEU A 84 SHEET 5 A 8 HIS B 55 TYR B 65 -1 O GLY B 63 N VAL A 58 SHEET 6 A 8 VAL B 81 SER B 88 -1 O LEU B 84 N ILE B 57 SHEET 7 A 8 HIS B 68 LEU B 78 -1 N GLU B 69 O LYS B 87 SHEET 8 A 8 ALA B 6 ASP B 12 -1 N ASP B 12 O PHE B 73 SHEET 1 B 5 VAL C 7 MET C 13 0 SHEET 2 B 5 HIS C 68 LEU C 78 -1 O PHE C 73 N ASP C 12 SHEET 3 B 5 VAL C 81 SER C 88 -1 O ILE C 83 N PHE C 76 SHEET 4 B 5 TRP C 54 GLY C 59 -1 N GLY C 59 O ALA C 82 SHEET 5 B 5 GLY D 63 TYR D 65 -1 O GLY D 63 N VAL C 58 SHEET 1 C 5 PHE C 62 TYR C 65 0 SHEET 2 C 5 HIS D 55 GLY D 59 -1 O VAL D 58 N GLY C 63 SHEET 3 C 5 VAL D 81 SER D 88 -1 O ALA D 82 N GLY D 59 SHEET 4 C 5 HIS D 68 LEU D 78 -1 N PHE D 76 O ILE D 83 SHEET 5 C 5 VAL D 7 ASP D 12 -1 N ASN D 10 O TYR D 75 SHEET 1 D 8 ALA E 6 ALA E 11 0 SHEET 2 D 8 HIS E 68 LEU E 78 -1 O TYR E 75 N ASN E 10 SHEET 3 D 8 VAL E 81 SER E 88 -1 O ILE E 83 N PHE E 76 SHEET 4 D 8 HIS E 55 TYR E 65 -1 N ILE E 57 O LEU E 84 SHEET 5 D 8 TRP F 54 TYR F 65 -1 O VAL F 58 N GLY E 63 SHEET 6 D 8 VAL F 81 SER F 88 -1 O ALA F 82 N GLY F 59 SHEET 7 D 8 HIS F 68 LEU F 78 -1 N PHE F 76 O ILE F 83 SHEET 8 D 8 ALA F 6 ASP F 12 -1 N ASP F 12 O PHE F 73 CISPEP 1 PRO A 52 THR A 53 0 1.05 CISPEP 2 PRO B 52 THR B 53 0 6.84 CISPEP 3 PRO C 52 THR C 53 0 7.06 CISPEP 4 PRO D 52 THR D 53 0 9.63 CISPEP 5 PRO E 52 THR E 53 0 -3.36 CISPEP 6 PRO F 52 THR F 53 0 7.59 CRYST1 36.482 44.871 84.825 79.62 77.54 88.03 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027411 -0.000943 -0.005984 0.00000 SCALE2 0.000000 0.022299 -0.004011 0.00000 SCALE3 0.000000 0.000000 0.012267 0.00000