HEADER HYDROLASE 22-JUL-08 3DWB TITLE STRUCTURE OF HUMAN ECE-1 COMPLEXED WITH PHOSPHORAMIDON COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHELIN-CONVERTING ENZYME 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTO DOMAIN, EXTRACELLULAR DOMAIN; COMPND 5 SYNONYM: ECE-1; COMPND 6 EC: 3.4.24.71; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ECE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI(NOVAGEN); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEIN, DISEASE MUTATION, GLYCOPROTEIN, HIRSCHSPRUNG DISEASE, KEYWDS 2 HYDROLASE, MEMBRANE, METAL-BINDING, METALLOPROTEASE, PHOSPHOPROTEIN, KEYWDS 3 PROTEASE, SIGNAL-ANCHOR, TRANSMEMBRANE, MCH_ECE_H_25A1_LT1.PDB EXPDTA X-RAY DIFFRACTION AUTHOR C.OEFNER REVDAT 7 20-MAR-24 3DWB 1 SOURCE REVDAT 6 01-NOV-23 3DWB 1 REMARK REVDAT 5 10-NOV-21 3DWB 1 REMARK SEQADV REVDAT 4 13-JUL-11 3DWB 1 VERSN REVDAT 3 23-JUN-09 3DWB 1 ATOM REVDAT 2 13-JAN-09 3DWB 1 JRNL VERSN REVDAT 1 25-NOV-08 3DWB 0 JRNL AUTH H.SCHULZ,G.E.DALE,Y.KARIMI-NEJAD,C.OEFNER JRNL TITL STRUCTURE OF HUMAN ENDOTHELIN-CONVERTING ENZYME I COMPLEXED JRNL TITL 2 WITH PHOSPHORAMIDON JRNL REF J.MOL.BIOL. V. 385 178 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 18992253 JRNL DOI 10.1016/J.JMB.2008.10.052 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 31886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.345 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1705 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4430 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 263 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5305 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.486 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.351 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.318 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.852 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5501 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4774 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7473 ; 1.525 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11164 ; 0.893 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 658 ; 6.797 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;35.778 ;24.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 904 ;19.287 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.460 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 794 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6112 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1125 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1550 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5213 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2667 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3129 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.116 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.272 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 82 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.374 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4259 ; 0.893 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1322 ; 0.126 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5356 ; 1.048 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2629 ; 1.435 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2117 ; 2.151 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 548 REMARK 3 ORIGIN FOR THE GROUP (A): 86.2534 14.4075 48.4450 REMARK 3 T TENSOR REMARK 3 T11: 0.1090 T22: 0.0126 REMARK 3 T33: -0.0269 T12: -0.2447 REMARK 3 T13: -0.0847 T23: 0.0853 REMARK 3 L TENSOR REMARK 3 L11: 1.3830 L22: 2.0287 REMARK 3 L33: 1.3239 L12: -1.2468 REMARK 3 L13: 0.2235 L23: -1.2476 REMARK 3 S TENSOR REMARK 3 S11: -0.1498 S12: -0.0894 S13: -0.0496 REMARK 3 S21: 0.5203 S22: -0.1395 S23: -0.2795 REMARK 3 S31: -0.4185 S32: 0.6163 S33: 0.2894 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: PDB ENTRY 1DMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% JEFFAMINE D2001, 0.1M BIS TRIS, PH REMARK 280 6.0, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.11533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.23067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.17300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 160.28833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.05767 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.11533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 128.23067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 160.28833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.17300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.05767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 422 REMARK 465 GLY A 423 REMARK 465 THR A 424 REMARK 465 LYS A 425 REMARK 465 LYS A 426 REMARK 465 THR A 427 REMARK 465 SER A 428 REMARK 465 LEU A 429 REMARK 465 PRO A 430 REMARK 465 ARG A 431 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 458 OH TYR A 506 2.09 REMARK 500 O THR A 729 O HOH A 929 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 887 O HOH A 887 12555 1.84 REMARK 500 O HOH A 821 O HOH A 987 7655 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 188 CG GLU A 188 CD 0.142 REMARK 500 GLU A 188 CD GLU A 188 OE2 0.365 REMARK 500 GLU A 275 CD GLU A 275 OE1 0.099 REMARK 500 GLU A 275 CD GLU A 275 OE2 0.131 REMARK 500 ASP A 412 CG ASP A 412 OD1 0.252 REMARK 500 GLU A 419 CD GLU A 419 OE1 0.111 REMARK 500 GLU A 458 CD GLU A 458 OE1 0.097 REMARK 500 GLU A 458 CD GLU A 458 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 188 OE1 - CD - OE2 ANGL. DEV. = 15.8 DEGREES REMARK 500 GLU A 188 CG - CD - OE2 ANGL. DEV. = -23.8 DEGREES REMARK 500 ASP A 412 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 754 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PRO A 757 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 140 -178.30 -60.96 REMARK 500 ARG A 145 119.10 -169.00 REMARK 500 SER A 170 48.25 -103.48 REMARK 500 ARG A 195 -145.68 53.04 REMARK 500 ALA A 216 96.36 -162.59 REMARK 500 ASP A 218 59.79 -91.39 REMARK 500 PHE A 236 -47.87 76.50 REMARK 500 ASN A 247 73.21 -163.52 REMARK 500 SER A 258 -173.89 -177.43 REMARK 500 GLU A 275 133.45 67.61 REMARK 500 LEU A 406 -158.34 -95.26 REMARK 500 PHE A 434 -62.67 -7.63 REMARK 500 VAL A 565 74.87 -100.49 REMARK 500 ASN A 566 -178.75 -171.48 REMARK 500 LEU A 583 45.51 -79.92 REMARK 500 ARG A 627 131.25 179.99 REMARK 500 PRO A 696 -61.44 -93.47 REMARK 500 LEU A 727 -5.44 -50.73 REMARK 500 PRO A 757 -24.75 -33.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 771 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 607 NE2 REMARK 620 2 HIS A 611 NE2 100.1 REMARK 620 3 RDF A 817 O1P 103.7 150.2 REMARK 620 N 1 2 REMARK 630 REMARK 630 MOLECULE TYPE: GLYCOPEPTIDE ENZYME INHIBITOR REMARK 630 MOLECULE NAME: N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L- REMARK 630 LEUCYL-L-TRYPTOPHAN REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 RDF A 817 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: RHA LEU TRP REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 771 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5HD A 816 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDF A 817 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DMT RELATED DB: PDB DBREF 3DWB A 101 770 UNP P42892 ECE1_HUMAN 101 770 SEQADV 3DWB SER A 428 UNP P42892 CYS 428 ENGINEERED MUTATION SEQRES 1 A 670 SER GLU ALA CYS VAL SER VAL THR SER SER ILE LEU SER SEQRES 2 A 670 SER MET ASP PRO THR VAL ASP PRO CYS HIS ASP PHE PHE SEQRES 3 A 670 SER TYR ALA CYS GLY GLY TRP ILE LYS ALA ASN PRO VAL SEQRES 4 A 670 PRO ASP GLY HIS SER ARG TRP GLY THR PHE SER ASN LEU SEQRES 5 A 670 TRP GLU HIS ASN GLN ALA ILE ILE LYS HIS LEU LEU GLU SEQRES 6 A 670 ASN SER THR ALA SER VAL SER GLU ALA GLU ARG LYS ALA SEQRES 7 A 670 GLN VAL TYR TYR ARG ALA CYS MET ASN GLU THR ARG ILE SEQRES 8 A 670 GLU GLU LEU ARG ALA LYS PRO LEU MET GLU LEU ILE GLU SEQRES 9 A 670 ARG LEU GLY GLY TRP ASN ILE THR GLY PRO TRP ALA LYS SEQRES 10 A 670 ASP ASN PHE GLN ASP THR LEU GLN VAL VAL THR ALA HIS SEQRES 11 A 670 TYR ARG THR SER PRO PHE PHE SER VAL TYR VAL SER ALA SEQRES 12 A 670 ASP SER LYS ASN SER ASN SER ASN VAL ILE GLN VAL ASP SEQRES 13 A 670 GLN SER GLY LEU GLY LEU PRO SER ARG ASP TYR TYR LEU SEQRES 14 A 670 ASN LYS THR GLU ASN GLU LYS VAL LEU THR GLY TYR LEU SEQRES 15 A 670 ASN TYR MET VAL GLN LEU GLY LYS LEU LEU GLY GLY GLY SEQRES 16 A 670 ASP GLU GLU ALA ILE ARG PRO GLN MET GLN GLN ILE LEU SEQRES 17 A 670 ASP PHE GLU THR ALA LEU ALA ASN ILE THR ILE PRO GLN SEQRES 18 A 670 GLU LYS ARG ARG ASP GLU GLU LEU ILE TYR HIS LYS VAL SEQRES 19 A 670 THR ALA ALA GLU LEU GLN THR LEU ALA PRO ALA ILE ASN SEQRES 20 A 670 TRP LEU PRO PHE LEU ASN THR ILE PHE TYR PRO VAL GLU SEQRES 21 A 670 ILE ASN GLU SER GLU PRO ILE VAL VAL TYR ASP LYS GLU SEQRES 22 A 670 TYR LEU GLU GLN ILE SER THR LEU ILE ASN THR THR ASP SEQRES 23 A 670 ARG CYS LEU LEU ASN ASN TYR MET ILE TRP ASN LEU VAL SEQRES 24 A 670 ARG LYS THR SER SER PHE LEU ASP GLN ARG PHE GLN ASP SEQRES 25 A 670 ALA ASP GLU LYS PHE MET GLU VAL MET TYR GLY THR LYS SEQRES 26 A 670 LYS THR SER LEU PRO ARG TRP LYS PHE CYS VAL SER ASP SEQRES 27 A 670 THR GLU ASN ASN LEU GLY PHE ALA LEU GLY PRO MET PHE SEQRES 28 A 670 VAL LYS ALA THR PHE ALA GLU ASP SER LYS SER ILE ALA SEQRES 29 A 670 THR GLU ILE ILE LEU GLU ILE LYS LYS ALA PHE GLU GLU SEQRES 30 A 670 SER LEU SER THR LEU LYS TRP MET ASP GLU GLU THR ARG SEQRES 31 A 670 LYS SER ALA LYS GLU LYS ALA ASP ALA ILE TYR ASN MET SEQRES 32 A 670 ILE GLY TYR PRO ASN PHE ILE MET ASP PRO LYS GLU LEU SEQRES 33 A 670 ASP LYS VAL PHE ASN ASP TYR THR ALA VAL PRO ASP LEU SEQRES 34 A 670 TYR PHE GLU ASN ALA MET ARG PHE PHE ASN PHE SER TRP SEQRES 35 A 670 ARG VAL THR ALA ASP GLN LEU ARG LYS ALA PRO ASN ARG SEQRES 36 A 670 ASP GLN TRP SER MET THR PRO PRO MET VAL ASN ALA TYR SEQRES 37 A 670 TYR SER PRO THR LYS ASN GLU ILE VAL PHE PRO ALA GLY SEQRES 38 A 670 ILE LEU GLN ALA PRO PHE TYR THR ARG SER SER PRO LYS SEQRES 39 A 670 ALA LEU ASN PHE GLY GLY ILE GLY VAL VAL VAL GLY HIS SEQRES 40 A 670 GLU LEU THR HIS ALA PHE ASP ASP GLN GLY ARG GLU TYR SEQRES 41 A 670 ASP LYS ASP GLY ASN LEU ARG PRO TRP TRP LYS ASN SER SEQRES 42 A 670 SER VAL GLU ALA PHE LYS ARG GLN THR GLU CYS MET VAL SEQRES 43 A 670 GLU GLN TYR SER ASN TYR SER VAL ASN GLY GLU PRO VAL SEQRES 44 A 670 ASN GLY ARG HIS THR LEU GLY GLU ASN ILE ALA ASP ASN SEQRES 45 A 670 GLY GLY LEU LYS ALA ALA TYR ARG ALA TYR GLN ASN TRP SEQRES 46 A 670 VAL LYS LYS ASN GLY ALA GLU HIS SER LEU PRO THR LEU SEQRES 47 A 670 GLY LEU THR ASN ASN GLN LEU PHE PHE LEU GLY PHE ALA SEQRES 48 A 670 GLN VAL TRP CYS SER VAL ARG THR PRO GLU SER SER HIS SEQRES 49 A 670 GLU GLY LEU ILE THR ASP PRO HIS SER PRO SER ARG PHE SEQRES 50 A 670 ARG VAL ILE GLY SER LEU SER ASN SER LYS GLU PHE SER SEQRES 51 A 670 GLU HIS PHE ARG CYS PRO PRO GLY SER PRO MET ASN PRO SEQRES 52 A 670 PRO HIS LYS CYS GLU VAL TRP HET ZN A 771 1 HET 5HD A 816 14 HET RDF A 817 37 HETNAM ZN ZINC ION HETNAM 5HD 5-(2-HYDROXYETHYL)NONANE-1,9-DIOL HETNAM RDF N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L- HETNAM 2 RDF LEUCYL-L-TRYPTOPHAN HETSYN RDF PHOSPHORAMIDON FORMUL 2 ZN ZN 2+ FORMUL 3 5HD C11 H24 O3 FORMUL 4 RDF C23 H34 N3 O10 P FORMUL 5 HOH *223(H2 O) HELIX 1 1 SER A 101 MET A 115 1 15 HELIX 2 2 ASP A 124 ASN A 137 1 14 HELIX 3 3 THR A 148 GLU A 165 1 18 HELIX 4 4 SER A 172 ASN A 187 1 16 HELIX 5 5 GLU A 188 ARG A 195 1 8 HELIX 6 6 ALA A 196 LEU A 206 1 11 HELIX 7 7 ASN A 219 HIS A 230 1 12 HELIX 8 8 ARG A 265 ASN A 270 1 6 HELIX 9 9 LYS A 276 LEU A 292 1 17 HELIX 10 10 ASP A 296 THR A 318 1 23 HELIX 11 11 PRO A 320 ARG A 325 5 6 HELIX 12 12 ASP A 326 TYR A 331 1 6 HELIX 13 13 ALA A 336 ALA A 343 1 8 HELIX 14 14 ASN A 347 PHE A 356 1 10 HELIX 15 15 ASP A 371 THR A 385 1 15 HELIX 16 16 ASP A 386 SER A 403 1 18 HELIX 17 17 SER A 404 LEU A 406 5 3 HELIX 18 18 ASP A 407 GLU A 419 1 13 HELIX 19 19 LYS A 433 PHE A 456 1 24 HELIX 20 20 ALA A 457 SER A 480 1 24 HELIX 21 21 ASP A 486 ILE A 500 1 15 HELIX 22 22 PRO A 507 MET A 511 5 5 HELIX 23 23 ASP A 512 ASN A 521 1 10 HELIX 24 24 LEU A 529 ASP A 547 1 19 HELIX 25 25 GLY A 581 LEU A 583 5 3 HELIX 26 26 PRO A 593 GLY A 600 1 8 HELIX 27 27 GLY A 600 ALA A 612 1 13 HELIX 28 28 GLN A 616 TYR A 620 5 5 HELIX 29 29 LYS A 631 SER A 650 1 20 HELIX 30 30 THR A 664 GLY A 690 1 27 HELIX 31 31 THR A 701 TRP A 714 1 14 HELIX 32 32 THR A 719 ASP A 730 1 12 HELIX 33 33 PRO A 734 ASN A 745 1 12 HELIX 34 34 SER A 746 ARG A 754 1 9 SHEET 1 A 2 ARG A 145 GLY A 147 0 SHEET 2 A 2 SER A 716 ARG A 718 -1 O VAL A 717 N TRP A 146 SHEET 1 B 4 SER A 238 ASP A 244 0 SHEET 2 B 4 ASN A 247 ASP A 256 -1 O SER A 250 N ASP A 244 SHEET 3 B 4 PRO A 366 VAL A 369 1 O VAL A 368 N ILE A 253 SHEET 4 B 4 HIS A 332 THR A 335 -1 N HIS A 332 O VAL A 369 SHEET 1 C 3 TYR A 501 GLY A 505 0 SHEET 2 C 3 GLU A 575 PRO A 579 1 O PHE A 578 N GLY A 505 SHEET 3 C 3 TYR A 568 SER A 570 -1 N SER A 570 O GLU A 575 SSBOND 1 CYS A 122 CYS A 755 1555 1555 2.06 SSBOND 2 CYS A 130 CYS A 715 1555 1555 2.02 SSBOND 3 CYS A 185 CYS A 435 1555 1555 2.05 SSBOND 4 CYS A 644 CYS A 767 1555 1555 2.00 LINK NE2 HIS A 607 ZN ZN A 771 1555 1555 2.25 LINK NE2 HIS A 611 ZN ZN A 771 1555 1555 2.13 LINK ZN ZN A 771 O1P RDF A 817 1555 1555 2.07 CISPEP 1 THR A 212 GLY A 213 0 -28.51 CISPEP 2 TYR A 357 PRO A 358 0 7.09 CISPEP 3 ALA A 585 PRO A 586 0 11.34 SITE 1 AC1 3 HIS A 607 HIS A 611 GLU A 667 SITE 1 AC2 1 GLN A 557 SITE 1 AC3 12 PHE A 149 ASN A 566 ALA A 567 ILE A 582 SITE 2 AC3 12 HIS A 607 GLU A 608 HIS A 611 GLU A 667 SITE 3 AC3 12 PRO A 731 HIS A 732 ARG A 738 HOH A 917 CRYST1 120.880 120.880 192.346 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008273 0.004776 0.000000 0.00000 SCALE2 0.000000 0.009552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005199 0.00000