HEADER METAL BINDING PROTEIN 30-JUL-08 3E02 TITLE CRYSTAL STRUCTURE OF A DUF849 FAMILY PROTEIN (BXE_C0271) FROM TITLE 2 BURKHOLDERIA XENOVORANS LB400 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN DUF849; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS LB400; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 GENE: YP_555544.1, BXENO_C0266, BXE_C0271; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 01-FEB-23 3E02 1 REMARK SEQADV REVDAT 7 24-JUL-19 3E02 1 REMARK LINK REVDAT 6 25-OCT-17 3E02 1 REMARK REVDAT 5 13-JUL-11 3E02 1 VERSN REVDAT 4 23-MAR-11 3E02 1 TITLE REVDAT 3 28-JUL-10 3E02 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3E02 1 VERSN REVDAT 1 12-AUG-08 3E02 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION (DUF849) JRNL TITL 2 (YP_555544.1) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.90 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1663 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.585 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2584 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1830 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3502 ; 1.617 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4443 ; 1.402 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ; 4.117 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;32.508 ;22.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 444 ;10.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;11.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2910 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 547 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 468 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1958 ; 0.146 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1214 ; 0.156 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1313 ; 0.072 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 269 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1831 ; 1.063 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 647 ; 0.165 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2578 ; 1.546 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1053 ; 3.279 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 906 ; 4.608 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 80.8350 27.2360 1.5330 REMARK 3 T TENSOR REMARK 3 T11: -0.2314 T22: -0.1329 REMARK 3 T33: -0.1926 T12: -0.0240 REMARK 3 T13: -0.0025 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.6216 L22: 0.6666 REMARK 3 L33: 0.4762 L12: -0.2943 REMARK 3 L13: 0.0320 L23: 0.1026 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: 0.1169 S13: -0.1594 REMARK 3 S21: -0.0801 S22: -0.0395 S23: 0.1023 REMARK 3 S31: 0.0769 S32: -0.0800 S33: 0.0071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. X-RAY FLUORESCENCE EXCITATION AND WAVELENGTH SCANS AND REMARK 3 ANOMALOUS DIFFERENCE FOURIERS SUPPORT THE MODELING OF ZN ION. REMARK 3 5. THERE ARE SOME UNINTERPRETABLE DENSITIES NEAR ZN-COORDINATING REMARK 3 WATERS. REMARK 3 6. EDO MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE REMARK 3 MODELED. REMARK 4 REMARK 4 3E02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97934,0.97892 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32785 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.198 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62500 REMARK 200 R SYM FOR SHELL (I) : 0.62500 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0000M K/NA TARTRATE, 0.1M MES PH REMARK 280 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.97933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.98967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.97933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.98967 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.97933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 42.98967 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 85.97933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.98967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE REMARK 300 ASSIGNMENT OF A TETRAMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 155.75550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.92548 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 155.75550 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 89.92548 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 42.98967 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 42.98967 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 LYS A 5 CD CE NZ REMARK 470 LYS A 35 CE NZ REMARK 470 GLU A 76 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 14 -37.60 -147.42 REMARK 500 SER A 309 39.02 -99.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 311 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 HIS A 51 NE2 96.9 REMARK 620 3 GLU A 258 OE2 114.9 97.2 REMARK 620 4 HOH A 324 O 156.3 93.7 84.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 321 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 381354 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3E02 A 1 310 UNP Q13I95 Q13I95_BURXL 1 310 SEQADV 3E02 GLY A 0 UNP Q13I95 EXPRESSION TAG SEQRES 1 A 311 GLY MSE LYS GLN SER LYS LYS ILE ILE ILE THR CYS ALA SEQRES 2 A 311 VAL THR GLY SER ILE HIS THR PRO THR MSE SER PRO TYR SEQRES 3 A 311 LEU PRO ILE THR PRO GLU GLU ILE VAL LYS GLU GLY VAL SEQRES 4 A 311 ALA ALA ALA GLU ALA GLY ALA ALA MSE LEU HIS LEU HIS SEQRES 5 A 311 ALA ARG ASP PRO LEU ASN GLY ARG PRO SER GLN ASP PRO SEQRES 6 A 311 ASP LEU PHE MSE ARG PHE LEU PRO GLN LEU LYS GLU ARG SEQRES 7 A 311 THR ASP ALA ILE LEU ASN ILE THR THR GLY GLY GLY LEU SEQRES 8 A 311 GLY MSE SER LEU ASP GLU ARG LEU ALA PRO ALA ARG ALA SEQRES 9 A 311 ALA ARG PRO GLU VAL ALA SER MSE ASN MSE GLY SER LEU SEQRES 10 A 311 ASN PHE ASN ILE SER GLN ALA ALA ALA LYS PHE ASP THR SEQRES 11 A 311 PHE LYS PHE ASP TRP GLU ARG PRO TYR LEU ALA GLY THR SEQRES 12 A 311 ARG ASP PHE ILE LEU SER ASN THR PHE SER GLN ILE GLU SEQRES 13 A 311 ARG GLY MSE THR GLU LEU GLY ALA SER GLY THR ARG PHE SEQRES 14 A 311 GLU PHE GLU CYS TYR ASP VAL GLY HIS LEU TYR ASN LEU SEQRES 15 A 311 ALA HIS PHE VAL ASP ARG LYS LEU VAL GLU PRO PRO PHE SEQRES 16 A 311 PHE LEU GLN CYS VAL PHE GLY ILE LEU GLY GLY ILE GLY SEQRES 17 A 311 ALA ASP PRO GLU ASN LEU LEU HIS MSE ARG THR ILE ALA SEQRES 18 A 311 ASP ARG LEU PHE GLY GLN ASP TYR TYR LEU SER VAL LEU SEQRES 19 A 311 ALA ALA GLY ARG HIS GLN MSE PRO PHE VAL THR MSE SER SEQRES 20 A 311 ALA ILE LEU GLY GLY ASN VAL ARG VAL GLY LEU GLU ASP SEQRES 21 A 311 SER LEU TYR SER GLY LYS GLY GLN LEU ALA THR SER ASN SEQRES 22 A 311 ALA GLU GLN VAL ARG LYS ILE ARG ARG ILE ILE GLU GLU SEQRES 23 A 311 LEU SER LEU ASP ILE ALA THR PRO ASP GLU ALA ARG ALA SEQRES 24 A 311 MSE LEU LYS THR LYS GLY ALA ASN GLU THR SER PHE MODRES 3E02 MSE A 1 MET SELENOMETHIONINE MODRES 3E02 MSE A 22 MET SELENOMETHIONINE MODRES 3E02 MSE A 47 MET SELENOMETHIONINE MODRES 3E02 MSE A 68 MET SELENOMETHIONINE MODRES 3E02 MSE A 92 MET SELENOMETHIONINE MODRES 3E02 MSE A 111 MET SELENOMETHIONINE MODRES 3E02 MSE A 113 MET SELENOMETHIONINE MODRES 3E02 MSE A 158 MET SELENOMETHIONINE MODRES 3E02 MSE A 216 MET SELENOMETHIONINE MODRES 3E02 MSE A 240 MET SELENOMETHIONINE MODRES 3E02 MSE A 245 MET SELENOMETHIONINE MODRES 3E02 MSE A 299 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 22 8 HET MSE A 47 8 HET MSE A 68 8 HET MSE A 92 8 HET MSE A 111 8 HET MSE A 113 8 HET MSE A 158 8 HET MSE A 216 8 HET MSE A 240 8 HET MSE A 245 13 HET MSE A 299 8 HET ZN A 311 1 HET EDO A 312 4 HET EDO A 313 4 HET EDO A 314 4 HET EDO A 315 4 HET EDO A 316 4 HET EDO A 317 4 HET EDO A 318 4 HET EDO A 319 4 HET EDO A 320 4 HET EDO A 321 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 10(C2 H6 O2) FORMUL 13 HOH *311(H2 O) HELIX 1 1 THR A 19 SER A 23 5 5 HELIX 2 2 THR A 29 GLY A 44 1 16 HELIX 3 3 ASP A 63 MSE A 68 1 6 HELIX 4 4 PHE A 70 THR A 78 1 9 HELIX 5 5 SER A 93 ARG A 105 1 13 HELIX 6 6 ILE A 120 PHE A 127 5 8 HELIX 7 7 TRP A 134 THR A 142 1 9 HELIX 8 8 THR A 150 ALA A 163 1 14 HELIX 9 9 ASP A 174 ARG A 187 1 14 HELIX 10 10 ASP A 209 GLY A 225 1 17 HELIX 11 11 HIS A 238 LEU A 249 1 12 HELIX 12 12 SER A 271 LEU A 286 1 16 HELIX 13 13 THR A 292 LYS A 301 1 10 HELIX 14 14 GLY A 304 THR A 308 5 5 SHEET 1 A 9 ILE A 9 ALA A 12 0 SHEET 2 A 9 MSE A 47 LEU A 50 1 O MSE A 47 N CYS A 11 SHEET 3 A 9 ILE A 81 ILE A 84 1 O ASN A 83 N LEU A 48 SHEET 4 A 9 VAL A 108 ASN A 112 1 O SER A 110 N ILE A 84 SHEET 5 A 9 ARG A 167 CYS A 172 1 O GLU A 169 N MSE A 111 SHEET 6 A 9 PHE A 194 PHE A 200 1 O GLN A 197 N PHE A 170 SHEET 7 A 9 TYR A 228 ALA A 234 1 O SER A 231 N CYS A 198 SHEET 8 A 9 ASN A 252 VAL A 255 1 O ASN A 252 N LEU A 230 SHEET 9 A 9 ILE A 9 ALA A 12 1 N THR A 10 O VAL A 253 SHEET 1 B 2 ALA A 52 ARG A 53 0 SHEET 2 B 2 PRO A 60 SER A 61 -1 O SER A 61 N ALA A 52 SHEET 1 C 2 LEU A 116 ASN A 117 0 SHEET 2 C 2 ILE A 146 LEU A 147 -1 O LEU A 147 N LEU A 116 SHEET 1 D 2 TYR A 262 GLY A 264 0 SHEET 2 D 2 GLN A 267 LEU A 268 -1 O GLN A 267 N SER A 263 LINK C MSE A 1 N LYS A 2 1555 1555 1.34 LINK C THR A 21 N MSE A 22 1555 1555 1.32 LINK C MSE A 22 N SER A 23 1555 1555 1.33 LINK C ALA A 46 N MSE A 47 1555 1555 1.34 LINK C MSE A 47 N LEU A 48 1555 1555 1.33 LINK C PHE A 67 N MSE A 68 1555 1555 1.34 LINK C MSE A 68 N ARG A 69 1555 1555 1.34 LINK C GLY A 91 N MSE A 92 1555 1555 1.34 LINK C MSE A 92 N SER A 93 1555 1555 1.33 LINK C SER A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N ASN A 112 1555 1555 1.33 LINK C ASN A 112 N MSE A 113 1555 1555 1.34 LINK C MSE A 113 N GLY A 114 1555 1555 1.32 LINK C GLY A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N THR A 159 1555 1555 1.33 LINK C HIS A 215 N MSE A 216 1555 1555 1.34 LINK C MSE A 216 N ARG A 217 1555 1555 1.34 LINK C GLN A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N PRO A 241 1555 1555 1.35 LINK C THR A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N SER A 246 1555 1555 1.34 LINK C ALA A 298 N MSE A 299 1555 1555 1.34 LINK C MSE A 299 N LEU A 300 1555 1555 1.33 LINK NE2 HIS A 49 ZN ZN A 311 1555 1555 2.17 LINK NE2 HIS A 51 ZN ZN A 311 1555 1555 2.21 LINK OE2 GLU A 258 ZN ZN A 311 1555 1555 2.21 LINK ZN ZN A 311 O HOH A 324 1555 1555 2.21 CISPEP 1 PRO A 192 PRO A 193 0 -1.37 SITE 1 AC1 6 HIS A 49 HIS A 51 GLU A 258 HOH A 322 SITE 2 AC1 6 HOH A 323 HOH A 324 SITE 1 AC2 3 LYS A 278 HOH A 453 HOH A 587 SITE 1 AC3 5 ILE A 17 PHE A 118 TYR A 173 ASP A 259 SITE 2 AC3 5 HOH A 428 SITE 1 AC4 4 THR A 129 PHE A 130 ARG A 136 HOH A 617 SITE 1 AC5 4 ALA A 123 LYS A 126 TYR A 262 HOH A 429 SITE 1 AC6 4 TYR A 25 HOH A 359 HOH A 577 HOH A 613 SITE 1 AC7 7 LEU A 90 TYR A 138 GLY A 141 THR A 142 SITE 2 AC7 7 PHE A 145 HOH A 403 HOH A 605 SITE 1 AC8 6 ILE A 28 THR A 29 PRO A 55 LEU A 56 SITE 2 AC8 6 HOH A 380 HOH A 418 SITE 1 AC9 7 TYR A 179 GLY A 201 ILE A 202 LEU A 203 SITE 2 AC9 7 GLY A 205 ILE A 206 GLY A 207 SITE 1 BC1 6 LEU A 94 ASP A 144 SER A 152 GLN A 153 SITE 2 BC1 6 ARG A 156 HOH A 432 SITE 1 BC2 3 GLU A 274 ARG A 277 ARG A 281 CRYST1 103.837 103.837 128.969 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009630 0.005560 0.000000 0.00000 SCALE2 0.000000 0.011120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007754 0.00000 HETATM 1 N MSE A 1 68.344 32.203 17.970 1.00 63.95 N HETATM 2 CA MSE A 1 69.168 31.088 17.417 1.00 63.98 C HETATM 3 C MSE A 1 68.777 29.755 18.045 1.00 64.56 C HETATM 4 O MSE A 1 68.692 29.669 19.274 1.00 64.59 O HETATM 5 CB MSE A 1 70.650 31.322 17.748 1.00 63.96 C HETATM 6 CG MSE A 1 71.631 30.421 16.990 1.00 63.80 C HETATM 7 SE MSE A 1 73.358 30.346 17.874 0.75 60.94 SE HETATM 8 CE MSE A 1 72.780 29.434 19.532 1.00 60.03 C