HEADER TRANSFERASE 31-JUL-08 3E0K TITLE CRYSTAL STRUCTURE OF C-TERMIANL DOMAIN OF N-ACETYLGLUTAMATE SYNTHASE TITLE 2 FROM VIBRIO PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINO-ACID ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 298-445; COMPND 5 SYNONYM: N-ACETYLGLUTAMATE SYNTHASE, AGS, NAGS; COMPND 6 EC: 2.3.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 GENE: ARGA, VP2371; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS VIBRIO PARAHAEMOLYTICUS, N-ACETYLGLUTAMATE SYNTHASE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, ACYLTRANSFERASE, AMINO-ACID BIOSYNTHESIS, KEYWDS 4 ARGININE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,G.SHACKELFORD,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 3E0K 1 VERSN REVDAT 2 24-FEB-09 3E0K 1 VERSN REVDAT 1 19-AUG-08 3E0K 0 JRNL AUTH C.CHANG,G.SHACKELFORD,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF C-TERMIANL DOMAIN OF N-ACETYLGLUTAMATE JRNL TITL 2 SYNTHASE FROM VIBRIO PARAHAEMOLYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 8351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 67.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.353 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1199 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1609 ; 1.413 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 145 ; 5.948 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;31.382 ;23.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 217 ;17.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 173 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 901 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 489 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 815 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 54 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 751 ; 0.640 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1149 ; 1.110 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 512 ; 1.425 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 459 ; 2.091 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3553 38.5834 67.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: -0.0383 REMARK 3 T33: -0.0587 T12: -0.0196 REMARK 3 T13: 0.0538 T23: -0.1001 REMARK 3 L TENSOR REMARK 3 L11: 10.0405 L22: 6.7416 REMARK 3 L33: 5.9387 L12: -5.9008 REMARK 3 L13: -1.2685 L23: -0.7823 REMARK 3 S TENSOR REMARK 3 S11: -0.4634 S12: -0.6629 S13: -0.7477 REMARK 3 S21: 0.5711 S22: 0.5543 S23: 0.4268 REMARK 3 S31: 0.2120 S32: -0.1170 S33: -0.0909 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4020 40.8877 58.4493 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: -0.0306 REMARK 3 T33: -0.0525 T12: -0.0648 REMARK 3 T13: 0.0484 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 5.4759 L22: 4.2590 REMARK 3 L33: 6.3794 L12: -3.5569 REMARK 3 L13: -4.3847 L23: 4.1228 REMARK 3 S TENSOR REMARK 3 S11: 0.2000 S12: 0.0738 S13: 0.3023 REMARK 3 S21: -0.0990 S22: -0.0058 S23: -0.0935 REMARK 3 S31: -0.2368 S32: -0.0564 S33: -0.1942 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 375 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0690 45.4871 52.4711 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: -0.0670 REMARK 3 T33: 0.0117 T12: -0.0290 REMARK 3 T13: 0.0673 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 16.1938 L22: 4.8959 REMARK 3 L33: 14.0838 L12: -5.0015 REMARK 3 L13: -13.2938 L23: 5.2802 REMARK 3 S TENSOR REMARK 3 S11: 0.8337 S12: 0.0309 S13: 0.7468 REMARK 3 S21: -0.8002 S22: -0.3151 S23: -0.2698 REMARK 3 S31: -1.1278 S32: -0.0757 S33: -0.5186 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 398 A 419 REMARK 3 RESIDUE RANGE : A 436 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6580 28.7816 52.0781 REMARK 3 T TENSOR REMARK 3 T11: -0.0499 T22: -0.0245 REMARK 3 T33: -0.0397 T12: -0.0178 REMARK 3 T13: 0.0788 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 3.7457 L22: 3.9499 REMARK 3 L33: 6.5119 L12: -1.9528 REMARK 3 L13: 2.9874 L23: -2.5246 REMARK 3 S TENSOR REMARK 3 S11: 0.1231 S12: -0.1279 S13: -0.2535 REMARK 3 S21: -0.2699 S22: 0.1822 S23: 0.5672 REMARK 3 S31: -0.0966 S32: -0.4396 S33: -0.3052 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 420 A 434 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0899 23.3092 50.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2139 REMARK 3 T33: 0.2389 T12: -0.0505 REMARK 3 T13: -0.0870 T23: -0.1093 REMARK 3 L TENSOR REMARK 3 L11: 6.0546 L22: 10.8448 REMARK 3 L33: 12.3752 L12: -6.3245 REMARK 3 L13: 3.7175 L23: 0.9206 REMARK 3 S TENSOR REMARK 3 S11: 0.2851 S12: -1.0982 S13: -0.3219 REMARK 3 S21: 0.9087 S22: 0.0316 S23: 0.0035 REMARK 3 S31: 1.2943 S32: 0.0494 S33: -0.3167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB048722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8366 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.31700 REMARK 200 FOR THE DATA SET : 2.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 1% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.35900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.11600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.11600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.17950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.11600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.11600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.53850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.11600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.11600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.17950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.11600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.11600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.53850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.35900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 112.71800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 296 REMARK 465 ASN A 297 REMARK 465 VAL A 326 REMARK 465 GLN A 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 431 CG CD1 CD2 REMARK 470 TYR A 432 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 433 CG OD1 REMARK 470 LYS A 437 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 303 CA CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 336 OH TYR A 356 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 433 33.95 -90.82 REMARK 500 LYS A 437 38.00 -73.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC61276.2 RELATED DB: TARGETDB DBREF 3E0K A 298 445 UNP Q87M87 ARGA_VIBPA 298 445 SEQADV 3E0K SER A 296 UNP Q87M87 EXPRESSION TAG SEQADV 3E0K ASN A 297 UNP Q87M87 EXPRESSION TAG SEQRES 1 A 150 SER ASN ALA GLU GLN VAL ARG GLN ALA GLY ILE ASP ASP SEQRES 2 A 150 ILE GLY GLY ILE LEU GLU LEU ILE HIS PRO LEU GLU GLU SEQRES 3 A 150 GLN GLY ILE LEU VAL ARG ARG SER ARG GLU GLN LEU GLU SEQRES 4 A 150 GLN GLU ILE GLY LYS PHE THR ILE ILE GLU LYS ASP GLY SEQRES 5 A 150 LEU ILE ILE GLY CYS ALA ALA LEU TYR PRO TYR SER GLU SEQRES 6 A 150 GLU ARG LYS ALA GLU MSE ALA CYS VAL ALA ILE HIS PRO SEQRES 7 A 150 ASP TYR ARG ASP GLY ASN ARG GLY LEU LEU LEU LEU ASN SEQRES 8 A 150 TYR MSE LYS HIS ARG SER LYS SER GLU ASN ILE ASN GLN SEQRES 9 A 150 ILE PHE VAL LEU THR THR HIS SER LEU HIS TRP PHE ARG SEQRES 10 A 150 GLU GLN GLY PHE TYR GLU VAL GLY VAL ASP TYR LEU PRO SEQRES 11 A 150 GLY ALA LYS GLN GLY LEU TYR ASN PHE GLN ARG LYS SER SEQRES 12 A 150 LYS ILE LEU ALA LEU ASP LEU MODRES 3E0K MSE A 366 MET SELENOMETHIONINE MODRES 3E0K MSE A 388 MET SELENOMETHIONINE HET MSE A 366 13 HET MSE A 388 8 HET SO4 A 501 5 HET EDO A 502 4 HET EDO A 503 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *51(H2 O) HELIX 1 1 GLY A 305 ASP A 307 5 3 HELIX 2 2 ASP A 308 GLN A 322 1 15 HELIX 3 3 SER A 329 ILE A 337 1 9 HELIX 4 4 PRO A 373 ARG A 376 5 4 HELIX 5 5 ASN A 379 SER A 394 1 16 HELIX 6 6 SER A 407 GLN A 414 1 8 HELIX 7 7 GLY A 420 LEU A 424 5 5 HELIX 8 8 PRO A 425 ALA A 427 5 3 HELIX 9 9 LYS A 428 ASN A 433 1 6 SHEET 1 A 5 GLU A 299 GLN A 303 0 SHEET 2 A 5 PHE A 340 LYS A 345 -1 O GLU A 344 N GLN A 300 SHEET 3 A 5 LEU A 348 TYR A 358 -1 O ALA A 353 N THR A 341 SHEET 4 A 5 LYS A 363 ILE A 371 -1 O LYS A 363 N TYR A 358 SHEET 5 A 5 GLN A 399 PHE A 401 1 O PHE A 401 N ALA A 364 LINK C GLU A 365 N MSE A 366 1555 1555 1.32 LINK C MSE A 366 N ALA A 367 1555 1555 1.32 LINK C TYR A 387 N MSE A 388 1555 1555 1.33 LINK C MSE A 388 N LYS A 389 1555 1555 1.33 SITE 1 AC1 5 HOH A 24 ARG A 376 ASP A 377 ARG A 380 SITE 2 AC1 5 GLY A 381 SITE 1 AC2 4 TYR A 356 PRO A 357 TYR A 358 ALA A 427 CRYST1 64.232 64.232 112.718 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008872 0.00000