HEADER CELL ADHESION 05-AUG-08 3E2M TITLE LFA-1 I DOMAIN BOUND TO INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-L; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VWFA DOMAIN; COMPND 5 SYNONYM: LEUKOCYTE ADHESION GLYCOPROTEIN LFA-1 ALPHA CHAIN, LFA-1A, COMPND 6 LEUKOCYTE FUNCTION-ASSOCIATED MOLECULE 1 ALPHA CHAIN, CD11A ANTIGEN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: ITGAL, CD11A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS INTEGRIN I-DOMAIN, LEUKOCYTE FUNCTION ASSOCIATED ANTIGEN-1, KEYWDS 2 ALTERNATIVE SPLICING, CALCIUM, CELL ADHESION, GLYCOPROTEIN, KEYWDS 3 MAGNESIUM, MEMBRANE, POLYMORPHISM, RECEPTOR, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR L.F.SILVIAN REVDAT 4 30-AUG-23 3E2M 1 REMARK SEQADV REVDAT 3 24-FEB-09 3E2M 1 VERSN REVDAT 2 07-OCT-08 3E2M 1 JRNL REVDAT 1 19-AUG-08 3E2M 0 JRNL AUTH E.Y.LIN,K.M.GUCKIAN,L.SILVIAN,D.CHIN,P.A.BORIACK-SJODIN, JRNL AUTH 2 H.VAN VLIJMEN,J.E.FRIEDMAN,D.M.SCOTT JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIP OF ORTHO- AND META-PHENOL JRNL TITL 2 BASED LFA-1 ICAM INHIBITORS JRNL REF BIOORG.MED.CHEM.LETT. V. 18 5245 2008 JRNL REFN ISSN 0960-894X JRNL PMID 18783948 JRNL DOI 10.1016/J.BMCL.2008.08.062 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 23427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.661 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3088 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4170 ; 1.363 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 5.817 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;35.371 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;15.193 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;24.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2264 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1687 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2116 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 91 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1869 ; 0.613 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2946 ; 0.955 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 2.331 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1224 ; 2.449 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3252 ; 2.298 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 392 ; 3.324 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3022 ; 1.493 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BLUE CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1LFA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG400, 20% PEG3350, 50MM K2HPO4 PH REMARK 280 4.5, 10MM MGCL2, 1MM INHIBITOR, PH 4.50, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.53100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.80400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.53100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.80400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 125 REMARK 465 SER A 126 REMARK 465 LYS A 127 REMARK 465 GLY B 125 REMARK 465 SER B 126 REMARK 465 LYS B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 364 O HOH A 477 1.67 REMARK 500 OE1 GLU B 293 NZ LYS B 296 1.87 REMARK 500 NZ LYS A 149 OE2 GLU A 293 2.08 REMARK 500 NZ LYS B 232 OD2 ASP B 253 2.08 REMARK 500 NE ARG A 221 O HOH A 349 2.15 REMARK 500 O HOH B 328 O HOH B 459 2.16 REMARK 500 O3 E2M B 1 O HOH B 332 2.16 REMARK 500 OE1 GLN B 266 O HOH B 481 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 222 O HOH B 475 4454 2.08 REMARK 500 O HOH A 344 O HOH A 448 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 292 C GLU A 293 N 0.179 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 293 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 LEU A 302 CA - CB - CG ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 164 -169.97 -118.68 REMARK 500 SER A 174 -96.71 -129.45 REMARK 500 LEU A 204 -132.60 -129.15 REMARK 500 LEU A 205 -158.43 -90.48 REMARK 500 THR B 164 -163.88 -122.67 REMARK 500 SER B 174 -102.17 -131.97 REMARK 500 LEU B 203 43.39 72.46 REMARK 500 LEU B 204 -138.40 -134.78 REMARK 500 LEU B 205 -159.30 -83.92 REMARK 500 ASP B 244 -168.63 -108.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E2M B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E2M A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BQN RELATED DB: PDB REMARK 900 RELATED ID: 3BQM RELATED DB: PDB DBREF 3E2M A 127 309 UNP P20701 ITAL_HUMAN 152 334 DBREF 3E2M B 127 309 UNP P20701 ITAL_HUMAN 152 334 SEQADV 3E2M GLY A 125 UNP P20701 EXPRESSION TAG SEQADV 3E2M SER A 126 UNP P20701 EXPRESSION TAG SEQADV 3E2M TRP A 189 UNP P20701 ARG 214 VARIANT SEQADV 3E2M GLY B 125 UNP P20701 EXPRESSION TAG SEQADV 3E2M SER B 126 UNP P20701 EXPRESSION TAG SEQADV 3E2M TRP B 189 UNP P20701 ARG 214 VARIANT SEQRES 1 A 185 GLY SER LYS GLY ASN VAL ASP LEU VAL PHE LEU PHE ASP SEQRES 2 A 185 GLY SER MET SER LEU GLN PRO ASP GLU PHE GLN LYS ILE SEQRES 3 A 185 LEU ASP PHE MET LYS ASP VAL MET LYS LYS LEU SER ASN SEQRES 4 A 185 THR SER TYR GLN PHE ALA ALA VAL GLN PHE SER THR SER SEQRES 5 A 185 TYR LYS THR GLU PHE ASP PHE SER ASP TYR VAL LYS TRP SEQRES 6 A 185 LYS ASP PRO ASP ALA LEU LEU LYS HIS VAL LYS HIS MET SEQRES 7 A 185 LEU LEU LEU THR ASN THR PHE GLY ALA ILE ASN TYR VAL SEQRES 8 A 185 ALA THR GLU VAL PHE ARG GLU GLU LEU GLY ALA ARG PRO SEQRES 9 A 185 ASP ALA THR LYS VAL LEU ILE ILE ILE THR ASP GLY GLU SEQRES 10 A 185 ALA THR ASP SER GLY ASN ILE ASP ALA ALA LYS ASP ILE SEQRES 11 A 185 ILE ARG TYR ILE ILE GLY ILE GLY LYS HIS PHE GLN THR SEQRES 12 A 185 LYS GLU SER GLN GLU THR LEU HIS LYS PHE ALA SER LYS SEQRES 13 A 185 PRO ALA SER GLU PHE VAL LYS ILE LEU ASP THR PHE GLU SEQRES 14 A 185 LYS LEU LYS ASP LEU PHE THR GLU LEU GLN LYS LYS ILE SEQRES 15 A 185 TYR VAL ILE SEQRES 1 B 185 GLY SER LYS GLY ASN VAL ASP LEU VAL PHE LEU PHE ASP SEQRES 2 B 185 GLY SER MET SER LEU GLN PRO ASP GLU PHE GLN LYS ILE SEQRES 3 B 185 LEU ASP PHE MET LYS ASP VAL MET LYS LYS LEU SER ASN SEQRES 4 B 185 THR SER TYR GLN PHE ALA ALA VAL GLN PHE SER THR SER SEQRES 5 B 185 TYR LYS THR GLU PHE ASP PHE SER ASP TYR VAL LYS TRP SEQRES 6 B 185 LYS ASP PRO ASP ALA LEU LEU LYS HIS VAL LYS HIS MET SEQRES 7 B 185 LEU LEU LEU THR ASN THR PHE GLY ALA ILE ASN TYR VAL SEQRES 8 B 185 ALA THR GLU VAL PHE ARG GLU GLU LEU GLY ALA ARG PRO SEQRES 9 B 185 ASP ALA THR LYS VAL LEU ILE ILE ILE THR ASP GLY GLU SEQRES 10 B 185 ALA THR ASP SER GLY ASN ILE ASP ALA ALA LYS ASP ILE SEQRES 11 B 185 ILE ARG TYR ILE ILE GLY ILE GLY LYS HIS PHE GLN THR SEQRES 12 B 185 LYS GLU SER GLN GLU THR LEU HIS LYS PHE ALA SER LYS SEQRES 13 B 185 PRO ALA SER GLU PHE VAL LYS ILE LEU ASP THR PHE GLU SEQRES 14 B 185 LYS LEU LYS ASP LEU PHE THR GLU LEU GLN LYS LYS ILE SEQRES 15 B 185 TYR VAL ILE HET E2M A 1 42 HET E2M B 1 42 HETNAM E2M CIS-4-{[2-({4-[(1E)-3-MORPHOLIN-4-YL-3-OXOPROP-1-EN-1- HETNAM 2 E2M YL]-2,3-BIS(TRIFLUOROMETHYL)PHENYL}SULFANYL) HETNAM 3 E2M PHENOXY]METHYL}CYCLOHEXANECARBOXYLIC ACID FORMUL 3 E2M 2(C29 H29 F6 N O5 S) FORMUL 5 HOH *368(H2 O) HELIX 1 1 GLN A 143 LEU A 161 1 19 HELIX 2 2 ASP A 182 LYS A 190 1 9 HELIX 3 3 ASP A 191 LYS A 197 1 7 HELIX 4 4 ASN A 207 VAL A 219 1 13 HELIX 5 5 ARG A 221 GLY A 225 5 5 HELIX 6 6 ILE A 248 LYS A 252 5 5 HELIX 7 7 LYS A 263 GLN A 266 5 4 HELIX 8 8 THR A 267 THR A 273 1 7 HELIX 9 9 LEU A 274 ALA A 278 5 5 HELIX 10 10 PRO A 281 PHE A 285 1 5 HELIX 11 11 GLU A 293 LYS A 304 1 12 HELIX 12 12 GLN B 143 LEU B 161 1 19 HELIX 13 13 ASP B 182 LYS B 190 1 9 HELIX 14 14 ASP B 191 LEU B 196 1 6 HELIX 15 15 ASN B 207 VAL B 219 1 13 HELIX 16 16 ARG B 221 GLY B 225 5 5 HELIX 17 17 ILE B 248 LYS B 252 5 5 HELIX 18 18 LYS B 263 GLN B 266 5 4 HELIX 19 19 THR B 267 LEU B 274 1 8 HELIX 20 20 HIS B 275 ALA B 278 5 4 HELIX 21 21 PRO B 281 PHE B 285 1 5 HELIX 22 22 GLU B 293 LYS B 304 1 12 SHEET 1 A 6 TYR A 177 PHE A 181 0 SHEET 2 A 6 TYR A 166 PHE A 173 -1 N GLN A 172 O LYS A 178 SHEET 3 A 6 VAL A 130 ASP A 137 1 N PHE A 134 O VAL A 171 SHEET 4 A 6 THR A 231 THR A 238 1 O THR A 231 N ASP A 131 SHEET 5 A 6 ILE A 255 ILE A 261 1 O ILE A 259 N ILE A 236 SHEET 6 A 6 VAL A 286 LEU A 289 1 O LEU A 289 N GLY A 260 SHEET 1 B 2 ILE A 306 VAL A 308 0 SHEET 2 B 2 ILE B 306 VAL B 308 -1 O TYR B 307 N TYR A 307 SHEET 1 C 6 TYR B 177 PHE B 181 0 SHEET 2 C 6 TYR B 166 PHE B 173 -1 N GLN B 172 O LYS B 178 SHEET 3 C 6 VAL B 130 ASP B 137 1 N LEU B 132 O GLN B 167 SHEET 4 C 6 THR B 231 THR B 238 1 O ILE B 235 N LEU B 135 SHEET 5 C 6 ILE B 255 ILE B 261 1 O TYR B 257 N ILE B 236 SHEET 6 C 6 VAL B 286 LEU B 289 1 O LYS B 287 N ILE B 258 CISPEP 1 LYS A 280 PRO A 281 0 6.65 CISPEP 2 LYS B 280 PRO B 281 0 6.97 SITE 1 AC1 16 VAL A 308 ILE A 309 LEU B 132 PHE B 153 SITE 2 AC1 16 VAL B 157 TYR B 166 TYR B 257 GLU B 284 SITE 3 AC1 16 PHE B 285 LYS B 287 GLU B 301 LEU B 302 SITE 4 AC1 16 HOH B 332 HOH B 441 HOH B 476 HOH B 487 SITE 1 AC2 15 LEU A 132 PHE A 153 VAL A 157 TYR A 166 SITE 2 AC2 15 TYR A 257 ILE A 259 GLU A 284 PHE A 285 SITE 3 AC2 15 GLU A 301 LEU A 302 HOH A 379 HOH A 399 SITE 4 AC2 15 HOH A 435 VAL B 308 ILE B 309 CRYST1 73.062 69.608 72.363 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013819 0.00000