HEADER OXIDOREDUCTASE 14-AUG-08 3E5J TITLE CRYSTAL STRUCTURE OF CYP105P1 WILD-TYPE LIGAND-FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 (CYTOCHROME P450 HYDROXYLASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYP105P1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 STRAIN: MA-4680; SOURCE 5 GENE: PTEC, SAV413, SAV_413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-17B KEYWDS P450, OXIDOREDUCTASE, HEME, IRON, METAL-BINDING, MONOOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR L.H.XU,S.FUSHINOBU,H.IKEDA,T.WAKAGI,H.SHOUN REVDAT 5 01-NOV-23 3E5J 1 REMARK REVDAT 4 10-NOV-21 3E5J 1 REMARK SEQADV REVDAT 3 13-JUL-11 3E5J 1 VERSN REVDAT 2 10-FEB-09 3E5J 1 JRNL REVDAT 1 30-DEC-08 3E5J 0 JRNL AUTH L.H.XU,S.FUSHINOBU,H.IKEDA,T.WAKAGI,H.SHOUN JRNL TITL CRYSTAL STRUCTURES OF CYTOCHROME P450 105P1 FROM JRNL TITL 2 STREPTOMYCES AVERMITILIS: CONFORMATIONAL FLEXIBILITY AND JRNL TITL 3 HISTIDINE LIGATION STATE JRNL REF J.BACTERIOL. V. 191 1211 2009 JRNL REFN ISSN 0021-9193 JRNL PMID 19074393 JRNL DOI 10.1128/JB.01276-08 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3130 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4269 ; 1.604 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 6.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;34.931 ;23.129 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;17.363 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2420 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1658 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2175 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 433 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.307 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2003 ; 1.016 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3124 ; 1.537 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1255 ; 2.472 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 3.784 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4056 18.7883 23.8128 REMARK 3 T TENSOR REMARK 3 T11: -0.0497 T22: 0.1336 REMARK 3 T33: 0.0815 T12: 0.0469 REMARK 3 T13: -0.0008 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.8205 L22: 1.3940 REMARK 3 L33: 1.5222 L12: 0.8665 REMARK 3 L13: -0.4097 L23: -0.1771 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: 0.1175 S13: -0.1784 REMARK 3 S21: -0.0827 S22: 0.0753 S23: -0.0838 REMARK 3 S31: 0.0538 S32: 0.2456 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3037 7.0219 15.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.0026 T22: 0.1421 REMARK 3 T33: 0.0937 T12: 0.0149 REMARK 3 T13: 0.0247 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 1.4101 L22: 1.6394 REMARK 3 L33: 3.7015 L12: 0.1026 REMARK 3 L13: 0.2657 L23: -0.4895 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.2572 S13: -0.2108 REMARK 3 S21: -0.0667 S22: -0.1317 S23: -0.0212 REMARK 3 S31: 0.2658 S32: -0.1143 S33: 0.1519 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2207 -4.1570 13.7202 REMARK 3 T TENSOR REMARK 3 T11: 0.3243 T22: 0.3145 REMARK 3 T33: 0.3212 T12: 0.0028 REMARK 3 T13: -0.0052 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 39.1507 L22: 52.5949 REMARK 3 L33: 14.5213 L12: -44.6297 REMARK 3 L13: -8.6436 L23: 14.5103 REMARK 3 S TENSOR REMARK 3 S11: 1.5688 S12: -2.2803 S13: 1.0398 REMARK 3 S21: -1.8807 S22: -0.1808 S23: -1.2623 REMARK 3 S31: 0.0537 S32: 0.1579 S33: -1.3880 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7859 8.5010 14.3592 REMARK 3 T TENSOR REMARK 3 T11: 0.0382 T22: 0.1381 REMARK 3 T33: 0.0965 T12: 0.0119 REMARK 3 T13: 0.0129 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 1.0896 L22: 0.6967 REMARK 3 L33: 2.9722 L12: -0.2637 REMARK 3 L13: -0.2210 L23: 0.1830 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.3085 S13: -0.1112 REMARK 3 S21: -0.1422 S22: -0.1112 S23: 0.0330 REMARK 3 S31: 0.2070 S32: -0.0863 S33: 0.1229 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 272 A 343 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3092 22.1914 27.7553 REMARK 3 T TENSOR REMARK 3 T11: -0.0078 T22: 0.1056 REMARK 3 T33: 0.0779 T12: 0.0370 REMARK 3 T13: 0.0039 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.5125 L22: 1.0946 REMARK 3 L33: 1.7783 L12: 1.2450 REMARK 3 L13: -1.0387 L23: -0.6972 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: 0.0196 S13: 0.1442 REMARK 3 S21: 0.0561 S22: 0.0710 S23: 0.0263 REMARK 3 S31: -0.0898 S32: 0.0957 S33: -0.0890 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 344 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6918 4.2497 30.0698 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: 0.0555 REMARK 3 T33: 0.0620 T12: 0.0341 REMARK 3 T13: 0.0352 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.4407 L22: 1.4811 REMARK 3 L33: 1.9350 L12: 0.1778 REMARK 3 L13: 0.1828 L23: 0.2501 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.1602 S13: -0.3081 REMARK 3 S21: 0.0873 S22: -0.0811 S23: -0.1446 REMARK 3 S31: 0.4845 S32: -0.0105 S33: 0.0945 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57002 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 65.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40900 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BVJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.7M SODIUM FORMATE, PH8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.94250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.20050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.20050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 145.41375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.20050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.20050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.47125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.20050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.20050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 145.41375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.20050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.20050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.47125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.94250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 THR A 79 REMARK 465 GLN A 80 REMARK 465 LYS A 81 REMARK 465 PRO A 82 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1678 O HOH A 1882 1.79 REMARK 500 OD1 ASN A 272 O HOH A 1868 1.95 REMARK 500 O LEU A 88 O HOH A 1812 2.03 REMARK 500 O HOH A 1412 O HOH A 1863 2.10 REMARK 500 O HOH A 1604 O HOH A 1883 2.14 REMARK 500 O HOH A 1759 O HOH A 1876 2.16 REMARK 500 OD1 ASP A 255 O HOH A 1870 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 179 C ALA A 180 N 0.235 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 28 CG1 - CB - CG2 ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 368 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 -69.57 -23.54 REMARK 500 LEU A 87 -55.19 69.69 REMARK 500 TRP A 89 46.90 -102.06 REMARK 500 PHE A 142 -67.32 -151.85 REMARK 500 GLU A 160 -57.52 -24.97 REMARK 500 ARG A 161 -39.08 152.41 REMARK 500 VAL A 175 113.61 8.09 REMARK 500 ALA A 180 -70.33 -48.85 REMARK 500 PRO A 218 -67.08 -26.41 REMARK 500 ASP A 219 -49.08 120.56 REMARK 500 THR A 282 68.85 24.73 REMARK 500 GLN A 285 -52.89 71.85 REMARK 500 LEU A 369 76.48 -116.24 REMARK 500 ILE A 387 -50.38 69.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 160 ARG A 161 -39.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1408 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 72 NE2 REMARK 620 2 HEM A1408 NA 84.5 REMARK 620 3 HEM A1408 NB 89.5 92.8 REMARK 620 4 HEM A1408 NC 95.3 179.6 86.9 REMARK 620 5 HEM A1408 ND 90.4 87.0 179.7 93.3 REMARK 620 6 CYS A 348 SG 176.0 98.3 87.5 81.9 92.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E5K RELATED DB: PDB REMARK 900 RELATED ID: 3E5L RELATED DB: PDB DBREF 3E5J A 1 399 UNP Q93H81 Q93H81_STRAW 1 399 SEQADV 3E5J ILE A 387 UNP Q93H81 MET 387 ENGINEERED MUTATION SEQADV 3E5J HIS A 400 UNP Q93H81 EXPRESSION TAG SEQADV 3E5J HIS A 401 UNP Q93H81 EXPRESSION TAG SEQADV 3E5J HIS A 402 UNP Q93H81 EXPRESSION TAG SEQADV 3E5J HIS A 403 UNP Q93H81 EXPRESSION TAG SEQRES 1 A 403 MET PRO GLU PRO THR ALA ASP ALA PRO THR VAL PRO LYS SEQRES 2 A 403 ALA ARG SER CYS PRO PHE LEU PRO PRO ASP GLY ILE ALA SEQRES 3 A 403 ASP ILE ARG ALA ALA ALA PRO VAL THR ARG ALA THR PHE SEQRES 4 A 403 THR SER GLY HIS GLU ALA TRP LEU VAL THR GLY TYR GLU SEQRES 5 A 403 GLU VAL ARG ALA LEU LEU ARG ASP SER SER PHE SER VAL SEQRES 6 A 403 GLN VAL PRO HIS ALA LEU HIS THR GLN ASP GLY VAL VAL SEQRES 7 A 403 THR GLN LYS PRO GLY ARG GLY SER LEU LEU TRP GLN ASP SEQRES 8 A 403 GLU PRO GLU HIS THR SER ASP ARG LYS LEU LEU ALA LYS SEQRES 9 A 403 GLU PHE THR VAL ARG ARG MET GLN ALA LEU ARG PRO ASN SEQRES 10 A 403 ILE GLN ARG ILE VAL ASP GLU HIS LEU ASP ALA ILE GLU SEQRES 11 A 403 ALA ARG GLY GLY PRO VAL ASP LEU VAL LYS THR PHE ALA SEQRES 12 A 403 ASN ALA VAL PRO SER MET VAL ILE SER ASP LEU PHE GLY SEQRES 13 A 403 VAL PRO VAL GLU ARG ARG ALA GLU PHE GLN ASP ILE ALA SEQRES 14 A 403 GLU ALA MET MET ARG VAL ASP GLN ASP ALA ALA ALA THR SEQRES 15 A 403 GLU ALA ALA GLY MET ARG LEU GLY GLY LEU LEU TYR GLN SEQRES 16 A 403 LEU VAL GLN GLU ARG ARG ALA ASN PRO GLY ASP ASP LEU SEQRES 17 A 403 ILE SER ALA LEU ILE THR THR GLU ASP PRO ASP GLY VAL SEQRES 18 A 403 VAL ASP ASP MET PHE LEU MET ASN ALA ALA GLY THR LEU SEQRES 19 A 403 LEU ILE ALA ALA HIS ASP THR THR ALA CYS MET ILE GLY SEQRES 20 A 403 LEU GLY THR ALA LEU LEU LEU ASP SER PRO ASP GLN LEU SEQRES 21 A 403 ALA LEU LEU ARG GLU ASP PRO SER LEU VAL GLY ASN ALA SEQRES 22 A 403 VAL GLU GLU LEU LEU ARG TYR LEU THR ILE GLY GLN PHE SEQRES 23 A 403 GLY GLY GLU ARG VAL ALA THR ARG ASP VAL GLU LEU GLY SEQRES 24 A 403 GLY VAL ARG ILE ALA LYS GLY GLU GLN VAL VAL ALA HIS SEQRES 25 A 403 VAL LEU ALA ALA ASP PHE ASP PRO ALA PHE VAL GLU GLU SEQRES 26 A 403 PRO GLU ARG PHE ASP ILE THR ARG ARG PRO ALA PRO HIS SEQRES 27 A 403 LEU ALA PHE GLY PHE GLY ALA HIS GLN CYS ILE GLY GLN SEQRES 28 A 403 GLN LEU ALA ARG ILE GLU LEU GLN ILE VAL PHE GLU THR SEQRES 29 A 403 LEU PHE ARG ARG LEU PRO GLY LEU ARG LEU ALA LYS PRO SEQRES 30 A 403 VAL GLU GLU LEU ARG PHE ARG HIS ASP ILE VAL PHE TYR SEQRES 31 A 403 GLY VAL HIS GLU LEU PRO VAL THR TRP HIS HIS HIS HIS HET HEM A1408 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *487(H2 O) HELIX 1 1 PRO A 22 GLY A 24 5 3 HELIX 2 2 ILE A 25 ALA A 32 1 8 HELIX 3 3 GLY A 50 ASP A 60 1 11 HELIX 4 4 HIS A 69 THR A 73 5 5 HELIX 5 5 PRO A 93 PHE A 106 1 14 HELIX 6 6 THR A 107 ALA A 113 1 7 HELIX 7 7 LEU A 114 GLY A 133 1 20 HELIX 8 8 LEU A 138 PHE A 142 1 5 HELIX 9 9 ALA A 145 PHE A 155 1 11 HELIX 10 10 PRO A 158 GLU A 160 5 3 HELIX 11 11 ARG A 161 ARG A 174 1 14 HELIX 12 12 ASP A 178 ASN A 203 1 26 HELIX 13 13 ASP A 207 THR A 214 1 8 HELIX 14 14 ASP A 223 ASP A 255 1 33 HELIX 15 15 SER A 256 ASP A 266 1 11 HELIX 16 16 LEU A 269 THR A 282 1 14 HELIX 17 17 HIS A 312 PHE A 318 1 7 HELIX 18 18 GLY A 350 LEU A 369 1 20 HELIX 19 19 PRO A 377 LEU A 381 5 5 SHEET 1 A 5 VAL A 34 THR A 38 0 SHEET 2 A 5 GLU A 44 VAL A 48 -1 O LEU A 47 N THR A 35 SHEET 3 A 5 GLN A 308 ALA A 311 1 O VAL A 310 N TRP A 46 SHEET 4 A 5 GLU A 289 ALA A 292 -1 N ARG A 290 O VAL A 309 SHEET 5 A 5 PHE A 63 VAL A 67 -1 N GLN A 66 O GLU A 289 SHEET 1 B 3 VAL A 136 ASP A 137 0 SHEET 2 B 3 PRO A 396 THR A 398 -1 O VAL A 397 N VAL A 136 SHEET 3 B 3 ARG A 373 LEU A 374 -1 N ARG A 373 O THR A 398 SHEET 1 C 2 VAL A 296 LEU A 298 0 SHEET 2 C 2 VAL A 301 ILE A 303 -1 O ILE A 303 N VAL A 296 SHEET 1 D 2 PHE A 383 HIS A 385 0 SHEET 2 D 2 PHE A 389 VAL A 392 -1 O TYR A 390 N ARG A 384 LINK NE2 HIS A 72 FE HEM A1408 1555 1555 2.17 LINK SG CYS A 348 FE HEM A1408 1555 1555 2.42 CISPEP 1 ASP A 75 GLY A 76 0 16.10 CISPEP 2 VAL A 77 VAL A 78 0 13.86 CISPEP 3 GLU A 92 PRO A 93 0 6.61 CISPEP 4 GLY A 133 GLY A 134 0 23.13 CISPEP 5 GLY A 134 PRO A 135 0 3.20 CISPEP 6 VAL A 175 ASP A 176 0 19.73 CISPEP 7 PRO A 218 ASP A 219 0 6.97 SITE 1 AC1 21 HIS A 72 LEU A 88 HIS A 95 ARG A 99 SITE 2 AC1 21 ALA A 237 ALA A 238 THR A 241 THR A 242 SITE 3 AC1 21 ILE A 283 GLY A 288 ARG A 290 ALA A 340 SITE 4 AC1 21 PHE A 341 GLY A 342 HIS A 346 CYS A 348 SITE 5 AC1 21 GLY A 350 ALA A 354 HOH A1471 HOH A1574 SITE 6 AC1 21 HOH A1712 CRYST1 88.401 88.401 193.885 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011312 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005158 0.00000