HEADER OXIDOREDUCTASE 14-AUG-08 3E68 TITLE STRUCTURE OF MURINE INOS OXYGENASE DOMAIN WITH INHIBITOR AR-C130232 CAVEAT 3E68 H4B A 902 HAS WRONG CHIRALITY AT ATOM C6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE, INDUCIBLE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 66-498; COMPND 5 SYNONYM: INDUCIBLE NO SYNTHASE, INDUCIBLE NOS, INOS, NOS TYPE II, COMPND 6 MACROPHAGE NOS, MAC-NOS; COMPND 7 EC: 1.14.13.39; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NOS2, INOSL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS NITRIC OXIDE, NOS, HEME, TETRAHYDROBIOPTERIN, OXIDOREDUCTASE, KEYWDS 2 CALMODULIN-BINDING, FAD, FMN, IRON, METAL-BINDING, NADP, KEYWDS 3 POLYMORPHISM, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR E.D.GARCIN,A.S.ARVAI,R.J.ROSENFELD,M.D.KROEGER,B.R.CRANE,G.ANDERSSON, AUTHOR 2 G.ANDREWS,P.J.HAMLEY,P.R.MALLINDER,D.J.NICHOLLS,S.A.ST-GALLAY, AUTHOR 3 A.C.TINKER,N.P.GENSMANTEL,A.METE,D.R.CHESHIRE,S.CONNOLLY,D.J.STUEH, AUTHOR 4 A.ABERG,A.V.WALLACE,J.A.TAINER,E.D.GETZOFF REVDAT 5 21-FEB-24 3E68 1 HETSYN REVDAT 4 29-JUL-20 3E68 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 SITE REVDAT 3 25-OCT-17 3E68 1 REMARK REVDAT 2 20-JAN-09 3E68 1 JRNL VERSN REVDAT 1 07-OCT-08 3E68 0 JRNL AUTH E.D.GARCIN,A.S.ARVAI,R.J.ROSENFELD,M.D.KROEGER,B.R.CRANE, JRNL AUTH 2 G.ANDERSSON,G.ANDREWS,P.J.HAMLEY,P.R.MALLINDER,D.J.NICHOLLS, JRNL AUTH 3 S.A.ST-GALLAY,A.C.TINKER,N.P.GENSMANTEL,A.METE,D.R.CHESHIRE, JRNL AUTH 4 S.CONNOLLY,D.J.STUEHR,A.ABERG,A.V.WALLACE,J.A.TAINER, JRNL AUTH 5 E.D.GETZOFF JRNL TITL ANCHORED PLASTICITY OPENS DOORS FOR SELECTIVE INHIBITOR JRNL TITL 2 DESIGN IN NITRIC OXIDE SYNTHASE. JRNL REF NAT.CHEM.BIOL. V. 4 700 2008 JRNL REFN ISSN 1552-4450 JRNL PMID 18849972 JRNL DOI 10.1038/NCHEMBIO.115 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3880907.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 76336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3875 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11542 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 601 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 251 REMARK 3 SOLVENT ATOMS : 570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.35000 REMARK 3 B22 (A**2) : -16.35000 REMARK 3 B33 (A**2) : 32.69000 REMARK 3 B12 (A**2) : 1.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.230 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.150 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.710 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.760 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 70.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.TOP REMARK 3 PARAMETER FILE 2 : ION.TOP REMARK 3 PARAMETER FILE 3 : TOPH19X.HEME REMARK 3 PARAMETER FILE 4 : A6_BOG.TOP REMARK 3 PARAMETER FILE 5 : TOPH19X_ETHGLY.TOP REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.PARAM REMARK 3 TOPOLOGY FILE 2 : ION.PARAM REMARK 3 TOPOLOGY FILE 3 : PARAM19X.HEME REMARK 3 TOPOLOGY FILE 4 : A6_BOG.PAR REMARK 3 TOPOLOGY FILE 5 : ETHGLY.PAR REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, MES, BOG, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.58333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.16667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.87500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.45833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.29167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.58333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 77.16667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.45833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 57.87500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.29167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 213.77900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.87500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 320.66850 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 185.13804 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 192.91667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2288 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2490 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2491 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2314 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2511 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2530 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2531 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2534 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 66 REMARK 465 ASP A 67 REMARK 465 LYS A 68 REMARK 465 LEU A 69 REMARK 465 HIS A 70 REMARK 465 VAL A 71 REMARK 465 THR A 72 REMARK 465 SER A 73 REMARK 465 THR A 74 REMARK 465 ARG A 75 REMARK 465 PRO A 76 REMARK 465 CYS A 104 REMARK 465 LYS A 105 REMARK 465 SER A 106 REMARK 465 LYS A 107 REMARK 465 GLN A 496 REMARK 465 ASN A 497 REMARK 465 GLU A 498 REMARK 465 LEU B 66 REMARK 465 ASP B 67 REMARK 465 LYS B 68 REMARK 465 LEU B 69 REMARK 465 HIS B 70 REMARK 465 VAL B 71 REMARK 465 THR B 72 REMARK 465 SER B 73 REMARK 465 THR B 74 REMARK 465 ARG B 75 REMARK 465 PRO B 76 REMARK 465 SER B 100 REMARK 465 ASP B 101 REMARK 465 PHE B 102 REMARK 465 THR B 103 REMARK 465 CYS B 104 REMARK 465 LYS B 105 REMARK 465 SER B 106 REMARK 465 LYS B 107 REMARK 465 SER B 108 REMARK 465 GLN B 496 REMARK 465 ASN B 497 REMARK 465 GLU B 498 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2359 O HOH A 2378 1.62 REMARK 500 O HOH B 2350 O HOH B 2387 1.84 REMARK 500 O HOH A 2054 O HOH A 2055 1.90 REMARK 500 O HOH B 2232 O HOH B 2233 1.97 REMARK 500 O HOH B 2339 O HOH B 2503 2.00 REMARK 500 O HOH B 2188 O HOH B 2333 2.01 REMARK 500 O HOH A 2436 O HOH A 2559 2.03 REMARK 500 O HOH B 2258 O HOH B 2423 2.04 REMARK 500 O HOH B 2115 O HOH B 2353 2.13 REMARK 500 O HOH B 2184 O HOH B 2346 2.14 REMARK 500 O HOH B 2142 O HOH B 2321 2.14 REMARK 500 O HOH A 2429 O HOH A 2492 2.17 REMARK 500 O HOH A 2058 O HOH A 2318 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2368 O HOH B 2499 9766 1.99 REMARK 500 O HOH A 2473 O HOH A 2473 9765 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 84 9.39 -67.81 REMARK 500 SER A 100 137.85 -32.58 REMARK 500 PHE A 102 -103.30 -97.92 REMARK 500 LEU A 110 40.57 -93.42 REMARK 500 PRO A 123 -172.74 -59.31 REMARK 500 PRO A 129 122.64 -34.39 REMARK 500 ALA A 151 156.76 -47.28 REMARK 500 THR A 172 -163.40 -171.06 REMARK 500 CYS A 211 159.66 -47.88 REMARK 500 SER A 212 -13.37 -153.03 REMARK 500 ASN A 230 40.85 37.14 REMARK 500 SER A 245 -79.21 -104.24 REMARK 500 MET A 266 155.49 -42.18 REMARK 500 ASP A 268 22.92 -78.88 REMARK 500 TRP A 289 135.39 -35.46 REMARK 500 ASP A 306 -94.71 61.18 REMARK 500 CYS A 361 66.21 -161.27 REMARK 500 ARG A 382 -126.45 -123.81 REMARK 500 ASN A 384 59.34 33.85 REMARK 500 THR A 397 2.91 -66.78 REMARK 500 ARG A 448 21.52 -140.45 REMARK 500 CYS A 451 102.56 -166.99 REMARK 500 PRO A 460 150.19 -47.80 REMARK 500 TYR B 78 144.70 178.62 REMARK 500 LEU B 110 44.47 -89.53 REMARK 500 ASN B 115 67.69 -114.58 REMARK 500 GLU B 150 77.75 65.76 REMARK 500 LYS B 152 71.02 -108.12 REMARK 500 THR B 172 -167.74 163.44 REMARK 500 SER B 212 -8.12 -156.48 REMARK 500 SER B 245 -68.29 -109.03 REMARK 500 ASP B 268 24.35 -74.55 REMARK 500 TYR B 293 56.59 38.72 REMARK 500 ASP B 306 -90.80 60.83 REMARK 500 CYS B 361 67.70 -158.17 REMARK 500 ARG B 382 -135.28 -126.25 REMARK 500 ASN B 384 53.22 30.02 REMARK 500 CYS B 451 105.75 -164.34 REMARK 500 LEU B 479 -163.57 -104.99 REMARK 500 TRP B 490 1.19 -66.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 194 SG REMARK 620 2 HEM B1901 NA 108.5 REMARK 620 3 HEM B1901 NB 98.8 88.0 REMARK 620 4 HEM B1901 NC 94.5 157.0 88.5 REMARK 620 5 HEM B1901 ND 99.3 89.7 161.5 86.4 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E65 RELATED DB: PDB REMARK 900 RELATED ID: 3E67 RELATED DB: PDB DBREF 3E68 A 66 498 UNP P29477 NOS2_MOUSE 66 498 DBREF 3E68 B 66 498 UNP P29477 NOS2_MOUSE 66 498 SEQRES 1 A 433 LEU ASP LYS LEU HIS VAL THR SER THR ARG PRO GLN TYR SEQRES 2 A 433 VAL ARG ILE LYS ASN TRP GLY SER GLY GLU ILE LEU HIS SEQRES 3 A 433 ASP THR LEU HIS HIS LYS ALA THR SER ASP PHE THR CYS SEQRES 4 A 433 LYS SER LYS SER CYS LEU GLY SER ILE MET ASN PRO LYS SEQRES 5 A 433 SER LEU THR ARG GLY PRO ARG ASP LYS PRO THR PRO LEU SEQRES 6 A 433 GLU GLU LEU LEU PRO HIS ALA ILE GLU PHE ILE ASN GLN SEQRES 7 A 433 TYR TYR GLY SER PHE LYS GLU ALA LYS ILE GLU GLU HIS SEQRES 8 A 433 LEU ALA ARG LEU GLU ALA VAL THR LYS GLU ILE GLU THR SEQRES 9 A 433 THR GLY THR TYR GLN LEU THR LEU ASP GLU LEU ILE PHE SEQRES 10 A 433 ALA THR LYS MET ALA TRP ARG ASN ALA PRO ARG CYS ILE SEQRES 11 A 433 GLY ARG ILE GLN TRP SER ASN LEU GLN VAL PHE ASP ALA SEQRES 12 A 433 ARG ASN CYS SER THR ALA GLN GLU MET PHE GLN HIS ILE SEQRES 13 A 433 CYS ARG HIS ILE LEU TYR ALA THR ASN ASN GLY ASN ILE SEQRES 14 A 433 ARG SER ALA ILE THR VAL PHE PRO GLN ARG SER ASP GLY SEQRES 15 A 433 LYS HIS ASP PHE ARG LEU TRP ASN SER GLN LEU ILE ARG SEQRES 16 A 433 TYR ALA GLY TYR GLN MET PRO ASP GLY THR ILE ARG GLY SEQRES 17 A 433 ASP ALA ALA THR LEU GLU PHE THR GLN LEU CYS ILE ASP SEQRES 18 A 433 LEU GLY TRP LYS PRO ARG TYR GLY ARG PHE ASP VAL LEU SEQRES 19 A 433 PRO LEU VAL LEU GLN ALA ASP GLY GLN ASP PRO GLU VAL SEQRES 20 A 433 PHE GLU ILE PRO PRO ASP LEU VAL LEU GLU VAL THR MET SEQRES 21 A 433 GLU HIS PRO LYS TYR GLU TRP PHE GLN GLU LEU GLY LEU SEQRES 22 A 433 LYS TRP TYR ALA LEU PRO ALA VAL ALA ASN MET LEU LEU SEQRES 23 A 433 GLU VAL GLY GLY LEU GLU PHE PRO ALA CYS PRO PHE ASN SEQRES 24 A 433 GLY TRP TYR MET GLY THR GLU ILE GLY VAL ARG ASP PHE SEQRES 25 A 433 CYS ASP THR GLN ARG TYR ASN ILE LEU GLU GLU VAL GLY SEQRES 26 A 433 ARG ARG MET GLY LEU GLU THR HIS THR LEU ALA SER LEU SEQRES 27 A 433 TRP LYS ASP ARG ALA VAL THR GLU ILE ASN VAL ALA VAL SEQRES 28 A 433 LEU HIS SER PHE GLN LYS GLN ASN VAL THR ILE MET ASP SEQRES 29 A 433 HIS HIS THR ALA SER GLU SER PHE MET LYS HIS MET GLN SEQRES 30 A 433 ASN GLU TYR ARG ALA ARG GLY GLY CYS PRO ALA ASP TRP SEQRES 31 A 433 ILE TRP LEU VAL PRO PRO VAL SER GLY SER ILE THR PRO SEQRES 32 A 433 VAL PHE HIS GLN GLU MET LEU ASN TYR VAL LEU SER PRO SEQRES 33 A 433 PHE TYR TYR TYR GLN ILE GLU PRO TRP LYS THR HIS ILE SEQRES 34 A 433 TRP GLN ASN GLU SEQRES 1 B 433 LEU ASP LYS LEU HIS VAL THR SER THR ARG PRO GLN TYR SEQRES 2 B 433 VAL ARG ILE LYS ASN TRP GLY SER GLY GLU ILE LEU HIS SEQRES 3 B 433 ASP THR LEU HIS HIS LYS ALA THR SER ASP PHE THR CYS SEQRES 4 B 433 LYS SER LYS SER CYS LEU GLY SER ILE MET ASN PRO LYS SEQRES 5 B 433 SER LEU THR ARG GLY PRO ARG ASP LYS PRO THR PRO LEU SEQRES 6 B 433 GLU GLU LEU LEU PRO HIS ALA ILE GLU PHE ILE ASN GLN SEQRES 7 B 433 TYR TYR GLY SER PHE LYS GLU ALA LYS ILE GLU GLU HIS SEQRES 8 B 433 LEU ALA ARG LEU GLU ALA VAL THR LYS GLU ILE GLU THR SEQRES 9 B 433 THR GLY THR TYR GLN LEU THR LEU ASP GLU LEU ILE PHE SEQRES 10 B 433 ALA THR LYS MET ALA TRP ARG ASN ALA PRO ARG CYS ILE SEQRES 11 B 433 GLY ARG ILE GLN TRP SER ASN LEU GLN VAL PHE ASP ALA SEQRES 12 B 433 ARG ASN CYS SER THR ALA GLN GLU MET PHE GLN HIS ILE SEQRES 13 B 433 CYS ARG HIS ILE LEU TYR ALA THR ASN ASN GLY ASN ILE SEQRES 14 B 433 ARG SER ALA ILE THR VAL PHE PRO GLN ARG SER ASP GLY SEQRES 15 B 433 LYS HIS ASP PHE ARG LEU TRP ASN SER GLN LEU ILE ARG SEQRES 16 B 433 TYR ALA GLY TYR GLN MET PRO ASP GLY THR ILE ARG GLY SEQRES 17 B 433 ASP ALA ALA THR LEU GLU PHE THR GLN LEU CYS ILE ASP SEQRES 18 B 433 LEU GLY TRP LYS PRO ARG TYR GLY ARG PHE ASP VAL LEU SEQRES 19 B 433 PRO LEU VAL LEU GLN ALA ASP GLY GLN ASP PRO GLU VAL SEQRES 20 B 433 PHE GLU ILE PRO PRO ASP LEU VAL LEU GLU VAL THR MET SEQRES 21 B 433 GLU HIS PRO LYS TYR GLU TRP PHE GLN GLU LEU GLY LEU SEQRES 22 B 433 LYS TRP TYR ALA LEU PRO ALA VAL ALA ASN MET LEU LEU SEQRES 23 B 433 GLU VAL GLY GLY LEU GLU PHE PRO ALA CYS PRO PHE ASN SEQRES 24 B 433 GLY TRP TYR MET GLY THR GLU ILE GLY VAL ARG ASP PHE SEQRES 25 B 433 CYS ASP THR GLN ARG TYR ASN ILE LEU GLU GLU VAL GLY SEQRES 26 B 433 ARG ARG MET GLY LEU GLU THR HIS THR LEU ALA SER LEU SEQRES 27 B 433 TRP LYS ASP ARG ALA VAL THR GLU ILE ASN VAL ALA VAL SEQRES 28 B 433 LEU HIS SER PHE GLN LYS GLN ASN VAL THR ILE MET ASP SEQRES 29 B 433 HIS HIS THR ALA SER GLU SER PHE MET LYS HIS MET GLN SEQRES 30 B 433 ASN GLU TYR ARG ALA ARG GLY GLY CYS PRO ALA ASP TRP SEQRES 31 B 433 ILE TRP LEU VAL PRO PRO VAL SER GLY SER ILE THR PRO SEQRES 32 B 433 VAL PHE HIS GLN GLU MET LEU ASN TYR VAL LEU SER PRO SEQRES 33 B 433 PHE TYR TYR TYR GLN ILE GLU PRO TRP LYS THR HIS ILE SEQRES 34 B 433 TRP GLN ASN GLU HET BOG A3100 20 HET SO4 A3003 5 HET SO4 A3004 5 HET SO4 A3005 5 HET AT6 A 905 21 HET HEM A 901 43 HET H4B A 902 17 HET EDO A3104 4 HET EDO A3101 4 HET EDO A3102 4 HET BOG B4100 20 HET SO4 B4003 5 HET SO4 B4004 5 HET AT6 B1905 21 HET HEM B1901 43 HET H4B B1902 17 HET EDO B4101 4 HET EDO B4102 4 HET EDO B4104 4 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM SO4 SULFATE ION HETNAM AT6 N-[2-(6-AMINO-4-METHYLPYRIDIN-2-YL)ETHYL]-4- HETNAM 2 AT6 CYANOBENZAMIDE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM H4B 5,6,7,8-TETRAHYDROBIOPTERIN HETNAM EDO 1,2-ETHANEDIOL HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BOG 2(C14 H28 O6) FORMUL 4 SO4 5(O4 S 2-) FORMUL 7 AT6 2(C16 H16 N4 O) FORMUL 8 HEM 2(C34 H32 FE N4 O4) FORMUL 9 H4B 2(C9 H15 N5 O3) FORMUL 10 EDO 6(C2 H6 O2) FORMUL 22 HOH *570(H2 O) HELIX 1 1 THR A 93 ALA A 98 5 6 HELIX 2 2 PRO A 116 THR A 120 5 5 HELIX 3 3 PRO A 129 SER A 147 1 19 HELIX 4 4 LYS A 152 GLY A 171 1 20 HELIX 5 5 THR A 176 ASN A 190 1 15 HELIX 6 6 GLY A 196 TRP A 200 5 5 HELIX 7 7 THR A 213 ASN A 230 1 18 HELIX 8 8 ASN A 231 ASN A 233 5 3 HELIX 9 9 THR A 277 LEU A 287 1 11 HELIX 10 10 PRO A 316 VAL A 320 5 5 HELIX 11 11 TYR A 330 GLY A 337 5 8 HELIX 12 12 GLY A 369 VAL A 374 1 6 HELIX 13 13 VAL A 374 ASP A 379 1 6 HELIX 14 14 ILE A 385 MET A 393 1 9 HELIX 15 15 THR A 399 SER A 402 5 4 HELIX 16 16 LEU A 403 GLN A 423 1 21 HELIX 17 17 ASP A 429 GLY A 449 1 21 HELIX 18 18 ASP A 454 VAL A 459 1 6 HELIX 19 19 SER A 463 GLN A 472 5 10 HELIX 20 20 GLU A 488 HIS A 493 1 6 HELIX 21 21 THR B 93 ALA B 98 5 6 HELIX 22 22 PRO B 116 THR B 120 5 5 HELIX 23 23 PRO B 129 GLY B 146 1 18 HELIX 24 24 LYS B 152 GLY B 171 1 20 HELIX 25 25 THR B 176 ASN B 190 1 15 HELIX 26 26 GLY B 196 TRP B 200 5 5 HELIX 27 27 THR B 213 ASN B 230 1 18 HELIX 28 28 ASN B 231 ASN B 233 5 3 HELIX 29 29 THR B 277 LEU B 287 1 11 HELIX 30 30 PRO B 316 VAL B 320 5 5 HELIX 31 31 TYR B 330 GLY B 337 5 8 HELIX 32 32 GLY B 369 VAL B 374 1 6 HELIX 33 33 VAL B 374 ASP B 379 1 6 HELIX 34 34 ILE B 385 MET B 393 1 9 HELIX 35 35 THR B 399 SER B 402 5 4 HELIX 36 36 LEU B 403 GLN B 423 1 21 HELIX 37 37 ASP B 429 GLY B 449 1 21 HELIX 38 38 ASP B 454 VAL B 459 1 6 HELIX 39 39 SER B 463 GLN B 472 5 10 HELIX 40 40 GLU B 488 THR B 492 5 5 SHEET 1 A 2 VAL A 79 LYS A 82 0 SHEET 2 A 2 ILE A 89 ASP A 92 -1 O ASP A 92 N VAL A 79 SHEET 1 B 4 GLN A 204 ASP A 207 0 SHEET 2 B 4 ALA A 237 VAL A 240 1 O ILE A 238 N PHE A 206 SHEET 3 B 4 PHE A 363 ASN A 364 -1 O ASN A 364 N ALA A 237 SHEET 4 B 4 ALA A 345 VAL A 346 -1 N VAL A 346 O PHE A 363 SHEET 1 C 3 ARG A 252 LEU A 253 0 SHEET 2 C 3 LEU A 301 GLN A 304 -1 O GLN A 304 N ARG A 252 SHEET 3 C 3 PRO A 310 PHE A 313 -1 O GLU A 311 N LEU A 303 SHEET 1 D 2 GLY A 263 GLN A 265 0 SHEET 2 D 2 ILE A 271 GLY A 273 -1 O ARG A 272 N TYR A 264 SHEET 1 E 2 GLU A 322 THR A 324 0 SHEET 2 E 2 LYS A 339 TYR A 341 -1 O TRP A 340 N VAL A 323 SHEET 1 F 3 LEU A 356 PHE A 358 0 SHEET 2 F 3 LEU A 350 VAL A 353 -1 N VAL A 353 O LEU A 356 SHEET 3 F 3 PHE A 482 TYR A 484 -1 O PHE A 482 N GLU A 352 SHEET 1 G 2 TYR A 367 MET A 368 0 SHEET 2 G 2 ILE A 427 MET A 428 1 O MET A 428 N TYR A 367 SHEET 1 H 2 VAL B 79 LYS B 82 0 SHEET 2 H 2 ILE B 89 ASP B 92 -1 O ASP B 92 N VAL B 79 SHEET 1 I 4 GLN B 204 ASP B 207 0 SHEET 2 I 4 ALA B 237 VAL B 240 1 O ILE B 238 N PHE B 206 SHEET 3 I 4 PHE B 363 ASN B 364 -1 O ASN B 364 N ALA B 237 SHEET 4 I 4 ALA B 345 VAL B 346 -1 N VAL B 346 O PHE B 363 SHEET 1 J 3 ARG B 252 LEU B 253 0 SHEET 2 J 3 LEU B 301 GLN B 304 -1 O GLN B 304 N ARG B 252 SHEET 3 J 3 GLU B 311 PHE B 313 -1 O PHE B 313 N LEU B 301 SHEET 1 K 2 GLY B 263 GLN B 265 0 SHEET 2 K 2 ILE B 271 GLY B 273 -1 O ARG B 272 N TYR B 264 SHEET 1 L 2 GLU B 322 THR B 324 0 SHEET 2 L 2 LYS B 339 TYR B 341 -1 O TRP B 340 N VAL B 323 SHEET 1 M 3 LEU B 356 PHE B 358 0 SHEET 2 M 3 LEU B 350 VAL B 353 -1 N VAL B 353 O LEU B 356 SHEET 3 M 3 PHE B 482 TYR B 484 -1 O PHE B 482 N GLU B 352 SHEET 1 N 2 TYR B 367 MET B 368 0 SHEET 2 N 2 ILE B 427 MET B 428 1 O MET B 428 N TYR B 367 LINK SG CYS B 194 FE HEM B1901 1555 1555 2.53 CISPEP 1 SER A 480 PRO A 481 0 0.07 CISPEP 2 SER B 480 PRO B 481 0 -0.08 CRYST1 213.779 213.779 115.750 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004678 0.002701 0.000000 0.00000 SCALE2 0.000000 0.005401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008639 0.00000