HEADER OXIDOREDUCTASE 15-AUG-08 3E6L TITLE STRUCTURE OF MURINE INOS OXYGENASE DOMAIN WITH INHIBITOR AR-C132283 CAVEAT 3E6L H4B A 902 HAS WRONG CHIRALITY AT ATOM C6 H4B B 1902 HAS CAVEAT 2 3E6L WRONG CHIRALITY AT ATOM C6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE, INDUCIBLE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 66-498; COMPND 5 SYNONYM: INDUCIBLE NO SYNTHASE, INDUCIBLE NOS, INOS, NOS TYPE II, COMPND 6 MACROPHAGE NOS, MAC-NOS; COMPND 7 EC: 1.14.13.39; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS NITRIC OXIDE, NOS, HEME, TETRAHYDROBIOPTERIN, OXIDOREDUCTASE, KEYWDS 2 CALMODULIN-BINDING, FAD, FMN, IRON, METAL-BINDING, NADP, KEYWDS 3 POLYMORPHISM, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR E.D.GARCIN,A.S.ARVAI,R.J.ROSENFELD,M.D.KROEGER,B.R.CRANE,G.ANDERSSON, AUTHOR 2 G.ANDREWS,P.J.HAMLEY,P.R.MALLINDER,D.J.NICHOLLS,S.A.ST-GALLAY, AUTHOR 3 A.C.TINKER,N.P.GENSMANTEL,A.METE,D.R.CHESHIRE,S.CONNOLLY,D.J.STUEH, AUTHOR 4 A.ABERG,A.V.WALLACE,J.A.TAINER,E.D.GETZOFF REVDAT 4 21-FEB-24 3E6L 1 HETSYN REVDAT 3 29-JUL-20 3E6L 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 SITE REVDAT 2 20-JAN-09 3E6L 1 JRNL VERSN REVDAT 1 07-OCT-08 3E6L 0 JRNL AUTH E.D.GARCIN,A.S.ARVAI,R.J.ROSENFELD,M.D.KROEGER,B.R.CRANE, JRNL AUTH 2 G.ANDERSSON,G.ANDREWS,P.J.HAMLEY,P.R.MALLINDER,D.J.NICHOLLS, JRNL AUTH 3 S.A.ST-GALLAY,A.C.TINKER,N.P.GENSMANTEL,A.METE,D.R.CHESHIRE, JRNL AUTH 4 S.CONNOLLY,D.J.STUEHR,A.ABERG,A.V.WALLACE,J.A.TAINER, JRNL AUTH 5 E.D.GETZOFF JRNL TITL ANCHORED PLASTICITY OPENS DOORS FOR SELECTIVE INHIBITOR JRNL TITL 2 DESIGN IN NITRIC OXIDE SYNTHASE. JRNL REF NAT.CHEM.BIOL. V. 4 700 2008 JRNL REFN ISSN 1552-4450 JRNL PMID 18849972 JRNL DOI 10.1038/NCHEMBIO.115 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1186086.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 64308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3270 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9161 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 519 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6724 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 243 REMARK 3 SOLVENT ATOMS : 545 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.77000 REMARK 3 B22 (A**2) : -11.77000 REMARK 3 B33 (A**2) : 23.55000 REMARK 3 B12 (A**2) : -4.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.160 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.770 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.850 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 54.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.TOP REMARK 3 PARAMETER FILE 2 : WATER.TOP REMARK 3 PARAMETER FILE 3 : ION.TOP REMARK 3 PARAMETER FILE 4 : LIGAND.TOP REMARK 3 PARAMETER FILE 5 : BOG.TOP REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.PARAM REMARK 3 TOPOLOGY FILE 2 : WATER.PARAM REMARK 3 TOPOLOGY FILE 3 : ION.PARAM REMARK 3 TOPOLOGY FILE 4 : LIGAND.PAR REMARK 3 TOPOLOGY FILE 5 : BOG.PAR REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68068 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, HEPES, BOG, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.71600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.43200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.07400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.79000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.35800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.71600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 77.43200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.79000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.07400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.35800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 213.89800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.07400 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 320.84700 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 185.24110 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 193.58000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2084 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2090 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2489 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2499 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2509 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2518 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2241 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2310 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2458 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2475 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2491 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2493 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 66 REMARK 465 ASP A 67 REMARK 465 LYS A 68 REMARK 465 LEU A 69 REMARK 465 HIS A 70 REMARK 465 VAL A 71 REMARK 465 THR A 72 REMARK 465 SER A 73 REMARK 465 THR A 74 REMARK 465 ARG A 75 REMARK 465 PRO A 76 REMARK 465 ASP A 101 REMARK 465 PHE A 102 REMARK 465 THR A 103 REMARK 465 CYS A 104 REMARK 465 LYS A 105 REMARK 465 SER A 106 REMARK 465 LYS A 107 REMARK 465 ASN A 497 REMARK 465 GLU A 498 REMARK 465 LEU B 66 REMARK 465 ASP B 67 REMARK 465 LYS B 68 REMARK 465 LEU B 69 REMARK 465 HIS B 70 REMARK 465 VAL B 71 REMARK 465 THR B 72 REMARK 465 SER B 73 REMARK 465 THR B 74 REMARK 465 ARG B 75 REMARK 465 PRO B 76 REMARK 465 ASP B 101 REMARK 465 PHE B 102 REMARK 465 THR B 103 REMARK 465 CYS B 104 REMARK 465 LYS B 105 REMARK 465 SER B 106 REMARK 465 LYS B 107 REMARK 465 ASN B 497 REMARK 465 GLU B 498 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 GLN B 77 CG CD OE1 NE2 REMARK 470 GLN B 496 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2313 O HOH B 2362 1.86 REMARK 500 O HOH B 2220 O HOH B 2285 1.95 REMARK 500 O HOH A 2048 O HOH A 2097 1.96 REMARK 500 O HOH B 2208 O HOH B 2210 2.02 REMARK 500 O HOH A 2157 O HOH A 2158 2.02 REMARK 500 O HOH B 2289 O HOH B 2498 2.03 REMARK 500 O HOH B 2302 O HOH B 2338 2.04 REMARK 500 O HOH B 2233 O HOH B 2378 2.06 REMARK 500 O HOH A 2067 O HOH A 2112 2.07 REMARK 500 O HOH A 2096 O HOH A 2352 2.07 REMARK 500 O HOH A 2120 O HOH A 2134 2.07 REMARK 500 O HOH B 2319 O HOH B 2320 2.08 REMARK 500 O HOH B 2215 O HOH B 2229 2.08 REMARK 500 O HOH B 2236 O HOH B 2246 2.12 REMARK 500 O HOH A 2075 O HOH A 2414 2.13 REMARK 500 O HOH A 2104 O HOH A 2337 2.15 REMARK 500 O HOH B 2302 O HOH B 2394 2.15 REMARK 500 O HOH A 2146 O HOH A 2494 2.16 REMARK 500 O HOH B 2463 O HOH B 2490 2.17 REMARK 500 O HOH B 2280 O HOH B 2317 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2227 O HOH B 2259 9766 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 84 4.05 -67.00 REMARK 500 THR A 99 -115.25 -96.52 REMARK 500 SER A 112 42.51 -83.90 REMARK 500 ALA A 151 152.07 -44.90 REMARK 500 THR A 172 -167.05 171.81 REMARK 500 ARG A 197 -2.20 -57.48 REMARK 500 SER A 212 -27.11 -145.39 REMARK 500 SER A 245 -76.27 -100.45 REMARK 500 ASP A 268 4.49 -65.96 REMARK 500 CYS A 361 72.59 -154.80 REMARK 500 ARG A 382 -135.93 -130.15 REMARK 500 ASN A 384 62.52 34.67 REMARK 500 THR A 397 -2.35 -59.05 REMARK 500 CYS A 451 101.65 -169.26 REMARK 500 LEU A 479 -157.64 -95.33 REMARK 500 THR B 99 123.08 120.29 REMARK 500 LEU B 110 62.48 -63.01 REMARK 500 SER B 112 55.51 -103.48 REMARK 500 LYS B 152 65.59 -116.04 REMARK 500 SER B 212 -9.23 -143.89 REMARK 500 SER B 245 -83.15 -107.15 REMARK 500 ASP B 268 8.06 -69.80 REMARK 500 TYR B 293 50.32 38.75 REMARK 500 LYS B 329 -46.70 -133.37 REMARK 500 CYS B 361 70.47 -158.92 REMARK 500 ARG B 382 -130.74 -125.01 REMARK 500 ASN B 384 60.28 24.52 REMARK 500 ALA B 401 -9.09 -56.69 REMARK 500 ARG B 448 23.58 -140.15 REMARK 500 CYS B 451 106.50 -163.91 REMARK 500 TRP B 490 7.75 -69.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 194 SG REMARK 620 2 HEM B1901 NA 107.3 REMARK 620 3 HEM B1901 NB 93.4 89.4 REMARK 620 4 HEM B1901 NC 95.1 157.6 89.2 REMARK 620 5 HEM B1901 ND 99.4 89.6 166.9 86.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E65 RELATED DB: PDB REMARK 900 RELATED ID: 3E67 RELATED DB: PDB REMARK 900 RELATED ID: 3E68 RELATED DB: PDB REMARK 900 RELATED ID: 3E6N RELATED DB: PDB REMARK 900 RELATED ID: 3E6O RELATED DB: PDB REMARK 900 RELATED ID: 3E6T RELATED DB: PDB REMARK 900 RELATED ID: 3E7G RELATED DB: PDB REMARK 900 RELATED ID: 3E7O RELATED DB: PDB REMARK 900 RELATED ID: 3E8I RELATED DB: PDB DBREF 3E6L A 66 498 UNP P29477 NOS2_MOUSE 66 498 DBREF 3E6L B 66 498 UNP P29477 NOS2_MOUSE 66 498 SEQRES 1 A 433 LEU ASP LYS LEU HIS VAL THR SER THR ARG PRO GLN TYR SEQRES 2 A 433 VAL ARG ILE LYS ASN TRP GLY SER GLY GLU ILE LEU HIS SEQRES 3 A 433 ASP THR LEU HIS HIS LYS ALA THR SER ASP PHE THR CYS SEQRES 4 A 433 LYS SER LYS SER CYS LEU GLY SER ILE MET ASN PRO LYS SEQRES 5 A 433 SER LEU THR ARG GLY PRO ARG ASP LYS PRO THR PRO LEU SEQRES 6 A 433 GLU GLU LEU LEU PRO HIS ALA ILE GLU PHE ILE ASN GLN SEQRES 7 A 433 TYR TYR GLY SER PHE LYS GLU ALA LYS ILE GLU GLU HIS SEQRES 8 A 433 LEU ALA ARG LEU GLU ALA VAL THR LYS GLU ILE GLU THR SEQRES 9 A 433 THR GLY THR TYR GLN LEU THR LEU ASP GLU LEU ILE PHE SEQRES 10 A 433 ALA THR LYS MET ALA TRP ARG ASN ALA PRO ARG CYS ILE SEQRES 11 A 433 GLY ARG ILE GLN TRP SER ASN LEU GLN VAL PHE ASP ALA SEQRES 12 A 433 ARG ASN CYS SER THR ALA GLN GLU MET PHE GLN HIS ILE SEQRES 13 A 433 CYS ARG HIS ILE LEU TYR ALA THR ASN ASN GLY ASN ILE SEQRES 14 A 433 ARG SER ALA ILE THR VAL PHE PRO GLN ARG SER ASP GLY SEQRES 15 A 433 LYS HIS ASP PHE ARG LEU TRP ASN SER GLN LEU ILE ARG SEQRES 16 A 433 TYR ALA GLY TYR GLN MET PRO ASP GLY THR ILE ARG GLY SEQRES 17 A 433 ASP ALA ALA THR LEU GLU PHE THR GLN LEU CYS ILE ASP SEQRES 18 A 433 LEU GLY TRP LYS PRO ARG TYR GLY ARG PHE ASP VAL LEU SEQRES 19 A 433 PRO LEU VAL LEU GLN ALA ASP GLY GLN ASP PRO GLU VAL SEQRES 20 A 433 PHE GLU ILE PRO PRO ASP LEU VAL LEU GLU VAL THR MET SEQRES 21 A 433 GLU HIS PRO LYS TYR GLU TRP PHE GLN GLU LEU GLY LEU SEQRES 22 A 433 LYS TRP TYR ALA LEU PRO ALA VAL ALA ASN MET LEU LEU SEQRES 23 A 433 GLU VAL GLY GLY LEU GLU PHE PRO ALA CYS PRO PHE ASN SEQRES 24 A 433 GLY TRP TYR MET GLY THR GLU ILE GLY VAL ARG ASP PHE SEQRES 25 A 433 CYS ASP THR GLN ARG TYR ASN ILE LEU GLU GLU VAL GLY SEQRES 26 A 433 ARG ARG MET GLY LEU GLU THR HIS THR LEU ALA SER LEU SEQRES 27 A 433 TRP LYS ASP ARG ALA VAL THR GLU ILE ASN VAL ALA VAL SEQRES 28 A 433 LEU HIS SER PHE GLN LYS GLN ASN VAL THR ILE MET ASP SEQRES 29 A 433 HIS HIS THR ALA SER GLU SER PHE MET LYS HIS MET GLN SEQRES 30 A 433 ASN GLU TYR ARG ALA ARG GLY GLY CYS PRO ALA ASP TRP SEQRES 31 A 433 ILE TRP LEU VAL PRO PRO VAL SER GLY SER ILE THR PRO SEQRES 32 A 433 VAL PHE HIS GLN GLU MET LEU ASN TYR VAL LEU SER PRO SEQRES 33 A 433 PHE TYR TYR TYR GLN ILE GLU PRO TRP LYS THR HIS ILE SEQRES 34 A 433 TRP GLN ASN GLU SEQRES 1 B 433 LEU ASP LYS LEU HIS VAL THR SER THR ARG PRO GLN TYR SEQRES 2 B 433 VAL ARG ILE LYS ASN TRP GLY SER GLY GLU ILE LEU HIS SEQRES 3 B 433 ASP THR LEU HIS HIS LYS ALA THR SER ASP PHE THR CYS SEQRES 4 B 433 LYS SER LYS SER CYS LEU GLY SER ILE MET ASN PRO LYS SEQRES 5 B 433 SER LEU THR ARG GLY PRO ARG ASP LYS PRO THR PRO LEU SEQRES 6 B 433 GLU GLU LEU LEU PRO HIS ALA ILE GLU PHE ILE ASN GLN SEQRES 7 B 433 TYR TYR GLY SER PHE LYS GLU ALA LYS ILE GLU GLU HIS SEQRES 8 B 433 LEU ALA ARG LEU GLU ALA VAL THR LYS GLU ILE GLU THR SEQRES 9 B 433 THR GLY THR TYR GLN LEU THR LEU ASP GLU LEU ILE PHE SEQRES 10 B 433 ALA THR LYS MET ALA TRP ARG ASN ALA PRO ARG CYS ILE SEQRES 11 B 433 GLY ARG ILE GLN TRP SER ASN LEU GLN VAL PHE ASP ALA SEQRES 12 B 433 ARG ASN CYS SER THR ALA GLN GLU MET PHE GLN HIS ILE SEQRES 13 B 433 CYS ARG HIS ILE LEU TYR ALA THR ASN ASN GLY ASN ILE SEQRES 14 B 433 ARG SER ALA ILE THR VAL PHE PRO GLN ARG SER ASP GLY SEQRES 15 B 433 LYS HIS ASP PHE ARG LEU TRP ASN SER GLN LEU ILE ARG SEQRES 16 B 433 TYR ALA GLY TYR GLN MET PRO ASP GLY THR ILE ARG GLY SEQRES 17 B 433 ASP ALA ALA THR LEU GLU PHE THR GLN LEU CYS ILE ASP SEQRES 18 B 433 LEU GLY TRP LYS PRO ARG TYR GLY ARG PHE ASP VAL LEU SEQRES 19 B 433 PRO LEU VAL LEU GLN ALA ASP GLY GLN ASP PRO GLU VAL SEQRES 20 B 433 PHE GLU ILE PRO PRO ASP LEU VAL LEU GLU VAL THR MET SEQRES 21 B 433 GLU HIS PRO LYS TYR GLU TRP PHE GLN GLU LEU GLY LEU SEQRES 22 B 433 LYS TRP TYR ALA LEU PRO ALA VAL ALA ASN MET LEU LEU SEQRES 23 B 433 GLU VAL GLY GLY LEU GLU PHE PRO ALA CYS PRO PHE ASN SEQRES 24 B 433 GLY TRP TYR MET GLY THR GLU ILE GLY VAL ARG ASP PHE SEQRES 25 B 433 CYS ASP THR GLN ARG TYR ASN ILE LEU GLU GLU VAL GLY SEQRES 26 B 433 ARG ARG MET GLY LEU GLU THR HIS THR LEU ALA SER LEU SEQRES 27 B 433 TRP LYS ASP ARG ALA VAL THR GLU ILE ASN VAL ALA VAL SEQRES 28 B 433 LEU HIS SER PHE GLN LYS GLN ASN VAL THR ILE MET ASP SEQRES 29 B 433 HIS HIS THR ALA SER GLU SER PHE MET LYS HIS MET GLN SEQRES 30 B 433 ASN GLU TYR ARG ALA ARG GLY GLY CYS PRO ALA ASP TRP SEQRES 31 B 433 ILE TRP LEU VAL PRO PRO VAL SER GLY SER ILE THR PRO SEQRES 32 B 433 VAL PHE HIS GLN GLU MET LEU ASN TYR VAL LEU SER PRO SEQRES 33 B 433 PHE TYR TYR TYR GLN ILE GLU PRO TRP LYS THR HIS ILE SEQRES 34 B 433 TRP GLN ASN GLU HET BOG A4001 20 HET SO4 A3001 5 HET SO4 A3002 5 HET SO4 A3003 5 HET SO4 A3006 5 HET SO4 A3007 5 HET SO4 A3008 5 HET HEM A 901 43 HET H4B A 902 17 HET A11 A 906 19 HET BOG B4002 20 HET SO4 B3004 5 HET SO4 B3005 5 HET SO4 B3009 5 HET HEM B1901 43 HET H4B B1902 17 HET A11 B1906 19 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM SO4 SULFATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM H4B 5,6,7,8-TETRAHYDROBIOPTERIN HETNAM A11 ETHYL 4-[(4-CHLOROPYRIDIN-2-YL)AMINO]PIPERIDINE-1- HETNAM 2 A11 CARBOXYLATE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN HEM HEME FORMUL 3 BOG 2(C14 H28 O6) FORMUL 4 SO4 9(O4 S 2-) FORMUL 10 HEM 2(C34 H32 FE N4 O4) FORMUL 11 H4B 2(C9 H15 N5 O3) FORMUL 12 A11 2(C13 H18 CL N3 O2) FORMUL 20 HOH *545(H2 O) HELIX 1 1 THR A 93 ALA A 98 5 6 HELIX 2 2 PRO A 116 THR A 120 5 5 HELIX 3 3 PRO A 129 SER A 147 1 19 HELIX 4 4 LYS A 152 GLY A 171 1 20 HELIX 5 5 THR A 176 ASN A 190 1 15 HELIX 6 6 GLY A 196 TRP A 200 5 5 HELIX 7 7 THR A 213 ASN A 230 1 18 HELIX 8 8 ASN A 231 ASN A 233 5 3 HELIX 9 9 THR A 277 LEU A 287 1 11 HELIX 10 10 PRO A 316 VAL A 320 5 5 HELIX 11 11 TYR A 330 GLY A 337 5 8 HELIX 12 12 GLY A 369 VAL A 374 1 6 HELIX 13 13 VAL A 374 ASP A 379 1 6 HELIX 14 14 ILE A 385 MET A 393 1 9 HELIX 15 15 THR A 399 SER A 402 5 4 HELIX 16 16 LEU A 403 GLN A 423 1 21 HELIX 17 17 ASP A 429 GLY A 449 1 21 HELIX 18 18 ASP A 454 VAL A 459 1 6 HELIX 19 19 SER A 463 GLN A 472 5 10 HELIX 20 20 GLU A 488 THR A 492 5 5 HELIX 21 21 THR B 93 ALA B 98 5 6 HELIX 22 22 PRO B 116 THR B 120 5 5 HELIX 23 23 PRO B 129 GLY B 146 1 18 HELIX 24 24 LYS B 152 GLY B 171 1 20 HELIX 25 25 THR B 176 ASN B 190 1 15 HELIX 26 26 GLY B 196 TRP B 200 5 5 HELIX 27 27 THR B 213 ASN B 230 1 18 HELIX 28 28 ASN B 231 ASN B 233 5 3 HELIX 29 29 THR B 277 LEU B 287 1 11 HELIX 30 30 PRO B 316 VAL B 320 5 5 HELIX 31 31 TYR B 330 GLY B 337 5 8 HELIX 32 32 GLY B 369 VAL B 374 1 6 HELIX 33 33 VAL B 374 ASP B 379 1 6 HELIX 34 34 ILE B 385 MET B 393 1 9 HELIX 35 35 THR B 399 SER B 402 5 4 HELIX 36 36 LEU B 403 GLN B 423 1 21 HELIX 37 37 ASP B 429 GLY B 449 1 21 HELIX 38 38 ASP B 454 VAL B 459 1 6 HELIX 39 39 SER B 463 GLN B 472 5 10 HELIX 40 40 GLU B 488 HIS B 493 1 6 SHEET 1 A 2 VAL A 79 LYS A 82 0 SHEET 2 A 2 ILE A 89 ASP A 92 -1 O ASP A 92 N VAL A 79 SHEET 1 B 4 GLN A 204 ASP A 207 0 SHEET 2 B 4 ALA A 237 VAL A 240 1 O ILE A 238 N PHE A 206 SHEET 3 B 4 PHE A 363 ASN A 364 -1 O ASN A 364 N ALA A 237 SHEET 4 B 4 ALA A 345 VAL A 346 -1 N VAL A 346 O PHE A 363 SHEET 1 C 3 ARG A 252 LEU A 253 0 SHEET 2 C 3 LEU A 301 GLN A 304 -1 O GLN A 304 N ARG A 252 SHEET 3 C 3 GLU A 311 PHE A 313 -1 O GLU A 311 N LEU A 303 SHEET 1 D 2 GLY A 263 GLN A 265 0 SHEET 2 D 2 ILE A 271 GLY A 273 -1 O ARG A 272 N TYR A 264 SHEET 1 E 2 GLU A 322 THR A 324 0 SHEET 2 E 2 LYS A 339 TYR A 341 -1 O TRP A 340 N VAL A 323 SHEET 1 F 3 LEU A 356 PHE A 358 0 SHEET 2 F 3 LEU A 350 VAL A 353 -1 N VAL A 353 O LEU A 356 SHEET 3 F 3 PHE A 482 TYR A 484 -1 O PHE A 482 N GLU A 352 SHEET 1 G 2 TYR A 367 MET A 368 0 SHEET 2 G 2 ILE A 427 MET A 428 1 O MET A 428 N TYR A 367 SHEET 1 H 2 VAL B 79 LYS B 82 0 SHEET 2 H 2 ILE B 89 ASP B 92 -1 O ASP B 92 N VAL B 79 SHEET 1 I 4 GLN B 204 ASP B 207 0 SHEET 2 I 4 ALA B 237 VAL B 240 1 O ILE B 238 N PHE B 206 SHEET 3 I 4 PHE B 363 ASN B 364 -1 O ASN B 364 N ALA B 237 SHEET 4 I 4 ALA B 345 VAL B 346 -1 N VAL B 346 O PHE B 363 SHEET 1 J 3 ARG B 252 LEU B 253 0 SHEET 2 J 3 LEU B 301 GLN B 304 -1 O GLN B 304 N ARG B 252 SHEET 3 J 3 GLU B 311 PHE B 313 -1 O PHE B 313 N LEU B 301 SHEET 1 K 2 GLY B 263 GLN B 265 0 SHEET 2 K 2 ILE B 271 GLY B 273 -1 O ARG B 272 N TYR B 264 SHEET 1 L 2 GLU B 322 THR B 324 0 SHEET 2 L 2 LYS B 339 TYR B 341 -1 O TRP B 340 N VAL B 323 SHEET 1 M 3 LEU B 356 PHE B 358 0 SHEET 2 M 3 LEU B 350 VAL B 353 -1 N LEU B 351 O PHE B 358 SHEET 3 M 3 PHE B 482 TYR B 484 -1 O TYR B 484 N LEU B 350 SHEET 1 N 2 TYR B 367 MET B 368 0 SHEET 2 N 2 ILE B 427 MET B 428 1 O MET B 428 N TYR B 367 LINK SG CYS B 194 FE HEM B1901 1555 1555 2.55 CISPEP 1 SER A 480 PRO A 481 0 0.22 CISPEP 2 SER B 480 PRO B 481 0 -0.12 CRYST1 213.898 213.898 116.148 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004675 0.002699 0.000000 0.00000 SCALE2 0.000000 0.005398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008610 0.00000