HEADER ISOMERASE 18-AUG-08 3E7D TITLE CRYSTAL STRUCTURE OF PRECORRIN-8X METHYL MUTASE CBIC/COBH FROM TITLE 2 BRUCELLA MELITENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBH, PRECORRIN-8X METHYLMUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS; SOURCE 3 ORGANISM_TAXID: 235; SOURCE 4 STRAIN: BRUCELLA MELITENSIS BIOVAR ABOTRUS 2308; SOURCE 5 GENE: COBH, BRUAB1_1288; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SSGCID, DECODE, BRABA00006A, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 30-AUG-23 3E7D 1 REMARK REVDAT 4 25-OCT-17 3E7D 1 REMARK REVDAT 3 13-JUL-11 3E7D 1 VERSN REVDAT 2 24-FEB-09 3E7D 1 VERSN REVDAT 1 26-AUG-08 3E7D 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF PRECORRIN-8X METHYL MUTASE CBIC/COBH JRNL TITL 2 FROM BRUCELLA MELITENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 67763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3309 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4053 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5909 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 648 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6007 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4039 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8165 ; 1.318 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9812 ; 1.405 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 809 ; 6.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;29.830 ;22.335 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 929 ;17.223 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;17.963 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 960 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6845 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1217 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4033 ; 0.473 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1650 ; 0.187 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6383 ; 0.836 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 1.468 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1782 ; 2.494 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 202 4 REMARK 3 1 B 4 B 202 4 REMARK 3 1 C 4 C 202 4 REMARK 3 1 D 4 D 202 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2369 ; 0.340 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 2369 ; 0.440 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 2369 ; 0.490 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 2369 ; 0.400 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2369 ; 0.730 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 2369 ; 0.830 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 2369 ; 0.520 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 2369 ; 1.240 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1561 -1.0851 11.6801 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3693 -11.0265 7.9483 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 205 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6932 -30.6293 28.8229 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 207 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4530 -19.2916 50.6551 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1F2V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ CONDITION A2, 20% PEG3000, 0.1 M REMARK 280 NA CITRATE PH 5.5, 0.4/0.4 UL DROPS, CRYSTAL ID 10993A2, 20 MG/ REMARK 280 ML PROTEIN IN 20 MM HEPES PH 7.0, 0.3 M NACL, 5% GLYCEROL, 2 MM REMARK 280 DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.46350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 206 REMARK 465 ARG A 207 REMARK 465 GLU A 208 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 208 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 ARG C 207 REMARK 465 GLU C 208 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASP D 3 REMARK 465 GLU D 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 27 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 HIS B 27 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 LYS C 60 CG CD CE NZ REMARK 470 ARG C 77 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 5 CG1 CG2 CD1 REMARK 470 LYS D 60 CG CD CE NZ REMARK 470 ARG D 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 85 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 91 CG OD1 OD2 REMARK 470 GLU D 105 CG CD OE1 OE2 REMARK 470 LYS D 108 CG CD CE NZ REMARK 470 GLU D 206 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 447 O HOH C 448 1.93 REMARK 500 O HOH C 381 O HOH C 496 1.99 REMARK 500 O HOH C 394 O HOH C 452 2.02 REMARK 500 O HOH C 448 O HOH C 449 2.03 REMARK 500 O HOH C 427 O HOH C 482 2.04 REMARK 500 O HOH D 275 O HOH D 295 2.09 REMARK 500 OE2 GLU C 56 O HOH C 390 2.13 REMARK 500 O HOH C 365 O HOH C 480 2.15 REMARK 500 O HOH D 211 O HOH D 321 2.18 REMARK 500 OD1 ASP C 100 OG SER C 102 2.19 REMARK 500 OD1 ASN D 50 O HOH D 276 2.19 REMARK 500 O HOH B 272 O HOH B 282 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 207 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 90 44.45 -146.98 REMARK 500 ASN A 112 -169.09 -128.70 REMARK 500 ASN A 135 -59.42 -127.32 REMARK 500 ALA B 90 35.41 -150.08 REMARK 500 ALA C 90 40.38 -144.91 REMARK 500 ASN C 135 -51.34 -139.54 REMARK 500 ALA D 90 44.28 -164.52 REMARK 500 ASP D 91 26.75 48.08 REMARK 500 LYS D 109 -71.64 -50.26 REMARK 500 ASN D 135 -54.68 -128.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BRAB.A.00006.A RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE TARGET ID DOES NOT EXIST IN TARGETDB AT THE TIME OF PROCESSING. DBREF 3E7D A 1 208 UNP Q57CK9 Q57CK9_BRUAB 1 208 DBREF 3E7D B 1 208 UNP Q57CK9 Q57CK9_BRUAB 1 208 DBREF 3E7D C 1 208 UNP Q57CK9 Q57CK9_BRUAB 1 208 DBREF 3E7D D 1 208 UNP Q57CK9 Q57CK9_BRUAB 1 208 SEQADV 3E7D GLY A -3 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D PRO A -2 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D GLY A -1 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D SER A 0 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D GLY B -3 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D PRO B -2 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D GLY B -1 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D SER B 0 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D GLY C -3 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D PRO C -2 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D GLY C -1 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D SER C 0 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D GLY D -3 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D PRO D -2 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D GLY D -1 UNP Q57CK9 EXPRESSION TAG SEQADV 3E7D SER D 0 UNP Q57CK9 EXPRESSION TAG SEQRES 1 A 212 GLY PRO GLY SER MET THR ASP TYR ILE ARG ASP GLY GLN SEQRES 2 A 212 ALA ILE TYR ASP ARG SER PHE ALA ILE ILE ARG ALA GLU SEQRES 3 A 212 ALA ASP LEU ARG HIS ILE PRO ALA ASP LEU GLU LYS LEU SEQRES 4 A 212 ALA VAL ARG VAL ILE HIS ALA CYS GLY MET VAL ASP VAL SEQRES 5 A 212 ALA ASN ASP LEU ALA PHE SER GLU GLY ALA GLY LYS ALA SEQRES 6 A 212 GLY ARG ASN ALA LEU LEU ALA GLY ALA PRO ILE LEU CYS SEQRES 7 A 212 ASP ALA ARG MET VAL ALA GLU GLY ILE THR ARG SER ARG SEQRES 8 A 212 LEU PRO ALA ASP ASN ARG VAL ILE TYR THR LEU SER ASP SEQRES 9 A 212 PRO SER VAL PRO GLU LEU ALA LYS LYS ILE GLY ASN THR SEQRES 10 A 212 ARG SER ALA ALA ALA LEU ASP LEU TRP LEU PRO HIS ILE SEQRES 11 A 212 GLU GLY SER ILE VAL ALA ILE GLY ASN ALA PRO THR ALA SEQRES 12 A 212 LEU PHE ARG LEU PHE GLU LEU LEU ASP ALA GLY ALA PRO SEQRES 13 A 212 LYS PRO ALA LEU ILE ILE GLY MET PRO VAL GLY PHE VAL SEQRES 14 A 212 GLY ALA ALA GLU SER LYS ASP GLU LEU ALA ALA ASN SER SEQRES 15 A 212 ARG GLY VAL PRO TYR VAL ILE VAL ARG GLY ARG ARG GLY SEQRES 16 A 212 GLY SER ALA MET THR ALA ALA ALA VAL ASN ALA LEU ALA SEQRES 17 A 212 SER GLU ARG GLU SEQRES 1 B 212 GLY PRO GLY SER MET THR ASP TYR ILE ARG ASP GLY GLN SEQRES 2 B 212 ALA ILE TYR ASP ARG SER PHE ALA ILE ILE ARG ALA GLU SEQRES 3 B 212 ALA ASP LEU ARG HIS ILE PRO ALA ASP LEU GLU LYS LEU SEQRES 4 B 212 ALA VAL ARG VAL ILE HIS ALA CYS GLY MET VAL ASP VAL SEQRES 5 B 212 ALA ASN ASP LEU ALA PHE SER GLU GLY ALA GLY LYS ALA SEQRES 6 B 212 GLY ARG ASN ALA LEU LEU ALA GLY ALA PRO ILE LEU CYS SEQRES 7 B 212 ASP ALA ARG MET VAL ALA GLU GLY ILE THR ARG SER ARG SEQRES 8 B 212 LEU PRO ALA ASP ASN ARG VAL ILE TYR THR LEU SER ASP SEQRES 9 B 212 PRO SER VAL PRO GLU LEU ALA LYS LYS ILE GLY ASN THR SEQRES 10 B 212 ARG SER ALA ALA ALA LEU ASP LEU TRP LEU PRO HIS ILE SEQRES 11 B 212 GLU GLY SER ILE VAL ALA ILE GLY ASN ALA PRO THR ALA SEQRES 12 B 212 LEU PHE ARG LEU PHE GLU LEU LEU ASP ALA GLY ALA PRO SEQRES 13 B 212 LYS PRO ALA LEU ILE ILE GLY MET PRO VAL GLY PHE VAL SEQRES 14 B 212 GLY ALA ALA GLU SER LYS ASP GLU LEU ALA ALA ASN SER SEQRES 15 B 212 ARG GLY VAL PRO TYR VAL ILE VAL ARG GLY ARG ARG GLY SEQRES 16 B 212 GLY SER ALA MET THR ALA ALA ALA VAL ASN ALA LEU ALA SEQRES 17 B 212 SER GLU ARG GLU SEQRES 1 C 212 GLY PRO GLY SER MET THR ASP TYR ILE ARG ASP GLY GLN SEQRES 2 C 212 ALA ILE TYR ASP ARG SER PHE ALA ILE ILE ARG ALA GLU SEQRES 3 C 212 ALA ASP LEU ARG HIS ILE PRO ALA ASP LEU GLU LYS LEU SEQRES 4 C 212 ALA VAL ARG VAL ILE HIS ALA CYS GLY MET VAL ASP VAL SEQRES 5 C 212 ALA ASN ASP LEU ALA PHE SER GLU GLY ALA GLY LYS ALA SEQRES 6 C 212 GLY ARG ASN ALA LEU LEU ALA GLY ALA PRO ILE LEU CYS SEQRES 7 C 212 ASP ALA ARG MET VAL ALA GLU GLY ILE THR ARG SER ARG SEQRES 8 C 212 LEU PRO ALA ASP ASN ARG VAL ILE TYR THR LEU SER ASP SEQRES 9 C 212 PRO SER VAL PRO GLU LEU ALA LYS LYS ILE GLY ASN THR SEQRES 10 C 212 ARG SER ALA ALA ALA LEU ASP LEU TRP LEU PRO HIS ILE SEQRES 11 C 212 GLU GLY SER ILE VAL ALA ILE GLY ASN ALA PRO THR ALA SEQRES 12 C 212 LEU PHE ARG LEU PHE GLU LEU LEU ASP ALA GLY ALA PRO SEQRES 13 C 212 LYS PRO ALA LEU ILE ILE GLY MET PRO VAL GLY PHE VAL SEQRES 14 C 212 GLY ALA ALA GLU SER LYS ASP GLU LEU ALA ALA ASN SER SEQRES 15 C 212 ARG GLY VAL PRO TYR VAL ILE VAL ARG GLY ARG ARG GLY SEQRES 16 C 212 GLY SER ALA MET THR ALA ALA ALA VAL ASN ALA LEU ALA SEQRES 17 C 212 SER GLU ARG GLU SEQRES 1 D 212 GLY PRO GLY SER MET THR ASP TYR ILE ARG ASP GLY GLN SEQRES 2 D 212 ALA ILE TYR ASP ARG SER PHE ALA ILE ILE ARG ALA GLU SEQRES 3 D 212 ALA ASP LEU ARG HIS ILE PRO ALA ASP LEU GLU LYS LEU SEQRES 4 D 212 ALA VAL ARG VAL ILE HIS ALA CYS GLY MET VAL ASP VAL SEQRES 5 D 212 ALA ASN ASP LEU ALA PHE SER GLU GLY ALA GLY LYS ALA SEQRES 6 D 212 GLY ARG ASN ALA LEU LEU ALA GLY ALA PRO ILE LEU CYS SEQRES 7 D 212 ASP ALA ARG MET VAL ALA GLU GLY ILE THR ARG SER ARG SEQRES 8 D 212 LEU PRO ALA ASP ASN ARG VAL ILE TYR THR LEU SER ASP SEQRES 9 D 212 PRO SER VAL PRO GLU LEU ALA LYS LYS ILE GLY ASN THR SEQRES 10 D 212 ARG SER ALA ALA ALA LEU ASP LEU TRP LEU PRO HIS ILE SEQRES 11 D 212 GLU GLY SER ILE VAL ALA ILE GLY ASN ALA PRO THR ALA SEQRES 12 D 212 LEU PHE ARG LEU PHE GLU LEU LEU ASP ALA GLY ALA PRO SEQRES 13 D 212 LYS PRO ALA LEU ILE ILE GLY MET PRO VAL GLY PHE VAL SEQRES 14 D 212 GLY ALA ALA GLU SER LYS ASP GLU LEU ALA ALA ASN SER SEQRES 15 D 212 ARG GLY VAL PRO TYR VAL ILE VAL ARG GLY ARG ARG GLY SEQRES 16 D 212 GLY SER ALA MET THR ALA ALA ALA VAL ASN ALA LEU ALA SEQRES 17 D 212 SER GLU ARG GLU FORMUL 5 HOH *648(H2 O) HELIX 1 1 ASP A 7 ALA A 23 1 17 HELIX 2 2 PRO A 29 ASP A 31 5 3 HELIX 3 3 LEU A 32 GLY A 44 1 13 HELIX 4 4 MET A 45 ASN A 50 5 6 HELIX 5 5 GLY A 57 ALA A 68 1 12 HELIX 6 6 ALA A 76 ILE A 83 1 8 HELIX 7 7 THR A 84 LEU A 88 5 5 HELIX 8 8 SER A 102 GLY A 111 1 10 HELIX 9 9 THR A 113 ALA A 118 1 6 HELIX 10 10 LEU A 119 ILE A 126 5 8 HELIX 11 11 ALA A 136 ALA A 149 1 14 HELIX 12 12 GLY A 166 ASN A 177 1 12 HELIX 13 13 GLY A 192 SER A 205 1 14 HELIX 14 14 ASP B 7 ALA B 23 1 17 HELIX 15 15 PRO B 29 ASP B 31 5 3 HELIX 16 16 LEU B 32 GLY B 44 1 13 HELIX 17 17 MET B 45 ASN B 50 5 6 HELIX 18 18 GLY B 57 ALA B 68 1 12 HELIX 19 19 ALA B 76 ILE B 83 1 8 HELIX 20 20 THR B 84 LEU B 88 5 5 HELIX 21 21 SER B 102 GLY B 111 1 10 HELIX 22 22 THR B 113 ALA B 118 1 6 HELIX 23 23 LEU B 119 LEU B 123 5 5 HELIX 24 24 ALA B 136 ALA B 149 1 14 HELIX 25 25 GLY B 166 ASN B 177 1 12 HELIX 26 26 GLY B 192 SER B 205 1 14 HELIX 27 27 ASP C 7 ALA C 23 1 17 HELIX 28 28 PRO C 29 GLY C 44 1 16 HELIX 29 29 MET C 45 ASN C 50 5 6 HELIX 30 30 GLY C 57 ALA C 68 1 12 HELIX 31 31 ALA C 76 ILE C 83 1 8 HELIX 32 32 THR C 84 LEU C 88 5 5 HELIX 33 33 SER C 102 GLY C 111 1 10 HELIX 34 34 THR C 113 ALA C 118 1 6 HELIX 35 35 LEU C 119 ILE C 126 5 8 HELIX 36 36 ALA C 136 ALA C 149 1 14 HELIX 37 37 GLY C 166 ASN C 177 1 12 HELIX 38 38 GLY C 192 SER C 205 1 14 HELIX 39 39 ASP D 7 ALA D 23 1 17 HELIX 40 40 PRO D 29 ASP D 31 5 3 HELIX 41 41 LEU D 32 GLY D 44 1 13 HELIX 42 42 ASP D 47 ASP D 51 1 5 HELIX 43 43 GLY D 57 ALA D 68 1 12 HELIX 44 44 ALA D 76 ILE D 83 1 8 HELIX 45 45 THR D 84 LEU D 88 5 5 HELIX 46 46 SER D 102 GLY D 111 1 10 HELIX 47 47 THR D 113 ALA D 118 1 6 HELIX 48 48 LEU D 119 ILE D 126 5 8 HELIX 49 49 ALA D 136 ALA D 149 1 14 HELIX 50 50 GLY D 166 ASN D 177 1 12 HELIX 51 51 GLY D 192 SER D 205 1 14 SHEET 1 A 6 LEU A 52 PHE A 54 0 SHEET 2 A 6 TYR A 183 VAL A 186 -1 O ILE A 185 N ALA A 53 SHEET 3 A 6 LEU A 156 GLY A 159 1 N GLY A 159 O VAL A 184 SHEET 4 A 6 ILE A 130 ILE A 133 1 N VAL A 131 O ILE A 158 SHEET 5 A 6 ILE A 72 CYS A 74 1 N LEU A 73 O ALA A 132 SHEET 6 A 6 VAL A 94 ILE A 95 1 O ILE A 95 N CYS A 74 SHEET 1 B 6 LEU B 52 PHE B 54 0 SHEET 2 B 6 TYR B 183 VAL B 186 -1 O ILE B 185 N ALA B 53 SHEET 3 B 6 LEU B 156 GLY B 159 1 N GLY B 159 O VAL B 184 SHEET 4 B 6 ILE B 130 ILE B 133 1 N VAL B 131 O ILE B 158 SHEET 5 B 6 ILE B 72 CYS B 74 1 N LEU B 73 O ALA B 132 SHEET 6 B 6 VAL B 94 ILE B 95 1 O ILE B 95 N ILE B 72 SHEET 1 C 6 LEU C 52 PHE C 54 0 SHEET 2 C 6 TYR C 183 VAL C 186 -1 O ILE C 185 N ALA C 53 SHEET 3 C 6 LEU C 156 GLY C 159 1 N GLY C 159 O VAL C 184 SHEET 4 C 6 ILE C 130 ILE C 133 1 N VAL C 131 O ILE C 158 SHEET 5 C 6 ILE C 72 CYS C 74 1 N LEU C 73 O ALA C 132 SHEET 6 C 6 VAL C 94 ILE C 95 1 O ILE C 95 N ILE C 72 SHEET 1 D 6 LEU D 52 PHE D 54 0 SHEET 2 D 6 TYR D 183 VAL D 186 -1 O ILE D 185 N ALA D 53 SHEET 3 D 6 LEU D 156 GLY D 159 1 N GLY D 159 O VAL D 184 SHEET 4 D 6 ILE D 130 ILE D 133 1 N VAL D 131 O ILE D 158 SHEET 5 D 6 ILE D 72 CYS D 74 1 N LEU D 73 O ILE D 130 SHEET 6 D 6 VAL D 94 ILE D 95 1 O ILE D 95 N ILE D 72 CRYST1 57.724 68.927 103.196 90.00 95.88 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017324 0.000000 0.001785 0.00000 SCALE2 0.000000 0.014508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009742 0.00000