HEADER TRANSFERASE 19-AUG-08 3E7V TITLE CRYSTAL STRUCTURE OF HUMAN HASPIN WITH A PYRAZOLO-PYRIMIDINE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE HASPIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 471-798; COMPND 5 SYNONYM: HAPLOID GERM CELL-SPECIFIC NUCLEAR PROTEIN KINASE, H-HASPIN, COMPND 6 GERM CELL-SPECIFIC GENE 2 PROTEIN; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS HASPIN, GERM CELL ASSOCIATED 2 (HASPIN), HAPLOID GERM CELL SPECIFIC KEYWDS 2 NUCLEAR PROTEIN KINASE, SGC, STRUCTURAL GENOMICS CONSORTIUM, ATP- KEYWDS 3 BINDING, CELL CYCLE, CHROMATIN REGULATOR, KINASE, MAGNESIUM, KEYWDS 4 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, SERINE/THREONINE- KEYWDS 5 PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,J.ESWARAN,T.KEATES,N.BURGESS-BROWN,O.FEDOROV, AUTHOR 2 A.C.W.PIKE,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,M.WICKSTROEM, AUTHOR 3 C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 30-AUG-23 3E7V 1 REMARK SEQADV LINK REVDAT 5 31-JAN-18 3E7V 1 AUTHOR JRNL REVDAT 4 13-JUL-11 3E7V 1 VERSN REVDAT 3 24-FEB-09 3E7V 1 VERSN REVDAT 2 28-OCT-08 3E7V 1 TITLE REVDAT 1 14-OCT-08 3E7V 0 JRNL AUTH P.FILIPPAKOPOULOS,J.ESWARAN,T.KEATES,N.BURGESS-BROWN, JRNL AUTH 2 O.FEDOROV,A.C.W.PIKE,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 3 M.WICKSTROEM,C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF HUMAN HASPIN WITH A PYRAZOLO-PYRIMIDINE JRNL TITL 2 LIGAND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : 1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2734 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1870 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3684 ; 1.453 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4555 ; 1.632 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.910 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;35.023 ;24.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 484 ;12.540 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2980 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 540 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1634 ; 3.317 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 663 ; 1.120 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2652 ; 4.441 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 6.984 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1032 ; 9.286 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 471 A 609 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3630 -18.6850 -3.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: -0.0077 REMARK 3 T33: 0.0562 T12: -0.0112 REMARK 3 T13: -0.0038 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.0677 L22: 0.1676 REMARK 3 L33: 0.4447 L12: -0.2951 REMARK 3 L13: 0.3711 L23: -0.0964 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: -0.0393 S13: -0.0136 REMARK 3 S21: 0.0089 S22: 0.0315 S23: -0.0142 REMARK 3 S31: -0.0168 S32: -0.0044 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 610 A 798 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8910 -0.6040 -13.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.0082 T22: -0.0159 REMARK 3 T33: 0.0631 T12: -0.0037 REMARK 3 T13: 0.0032 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.6960 L22: 0.8443 REMARK 3 L33: 0.7225 L12: 0.0927 REMARK 3 L13: -0.3735 L23: -0.2300 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: 0.0008 S13: 0.1469 REMARK 3 S21: -0.0265 S22: -0.0372 S23: -0.0614 REMARK 3 S31: -0.0621 S32: 0.0004 S33: -0.0204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : 0.50300 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VUW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PCB, 30% PEG 1K , PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.24850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.47600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.24850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.47600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 SER A 449 REMARK 465 SER A 450 REMARK 465 GLY A 451 REMARK 465 VAL A 452 REMARK 465 ASP A 453 REMARK 465 LEU A 454 REMARK 465 GLY A 455 REMARK 465 THR A 456 REMARK 465 GLU A 457 REMARK 465 ASN A 458 REMARK 465 LEU A 459 REMARK 465 TYR A 460 REMARK 465 PHE A 461 REMARK 465 GLN A 462 REMARK 465 SER A 463 REMARK 465 MET A 464 REMARK 465 GLY A 465 REMARK 465 GLU A 466 REMARK 465 CYS A 467 REMARK 465 SER A 468 REMARK 465 GLN A 469 REMARK 465 LYS A 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 LYS A 584 CD CE NZ REMARK 470 LYS A 659 CE NZ REMARK 470 LYS A 672 CE NZ REMARK 470 GLU A 708 CG CD OE1 OE2 REMARK 470 LYS A 727 CE NZ REMARK 470 LYS A 759 CD CE NZ REMARK 470 LYS A 768 CD CE NZ REMARK 470 LYS A 773 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1034 O HOH A 1074 2.12 REMARK 500 O HOH A 1079 O HOH A 1080 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 478 CB CYS A 478 SG -0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 692 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 692 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 516 -2.54 77.45 REMARK 500 VAL A 549 -56.41 -122.89 REMARK 500 PHE A 556 -136.70 -104.72 REMARK 500 ARG A 648 -0.57 71.09 REMARK 500 ASP A 649 40.84 -155.02 REMARK 500 ASP A 687 84.89 72.60 REMARK 500 ASN A 763 22.20 -151.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 799 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 477 NE2 REMARK 620 2 HIS A 563 NE2 104.3 REMARK 620 3 HOH A 831 O 92.2 111.1 REMARK 620 4 HOH A 968 O 92.1 82.6 164.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DZO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 799 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 DBREF 3E7V A 471 798 UNP Q8TF76 HASP_HUMAN 471 798 SEQADV 3E7V MET A 442 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V HIS A 443 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V HIS A 444 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V HIS A 445 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V HIS A 446 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V HIS A 447 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V HIS A 448 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V SER A 449 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V SER A 450 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V GLY A 451 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V VAL A 452 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V ASP A 453 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V LEU A 454 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V GLY A 455 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V THR A 456 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V GLU A 457 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V ASN A 458 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V LEU A 459 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V TYR A 460 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V PHE A 461 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V GLN A 462 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V SER A 463 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V MET A 464 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V GLY A 465 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V GLU A 466 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V CYS A 467 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V SER A 468 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V GLN A 469 UNP Q8TF76 EXPRESSION TAG SEQADV 3E7V LYS A 470 UNP Q8TF76 EXPRESSION TAG SEQRES 1 A 357 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 357 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY GLU CYS SEQRES 3 A 357 SER GLN LYS GLY PRO VAL PRO PHE SER HIS CYS LEU PRO SEQRES 4 A 357 THR GLU LYS LEU GLN ARG CYS GLU LYS ILE GLY GLU GLY SEQRES 5 A 357 VAL PHE GLY GLU VAL PHE GLN THR ILE ALA ASP HIS THR SEQRES 6 A 357 PRO VAL ALA ILE LYS ILE ILE ALA ILE GLU GLY PRO ASP SEQRES 7 A 357 LEU VAL ASN GLY SER HIS GLN LYS THR PHE GLU GLU ILE SEQRES 8 A 357 LEU PRO GLU ILE ILE ILE SER LYS GLU LEU SER LEU LEU SEQRES 9 A 357 SER GLY GLU VAL CYS ASN ARG THR GLU GLY PHE ILE GLY SEQRES 10 A 357 LEU ASN SER VAL HIS CYS VAL GLN GLY SER TYR PRO PRO SEQRES 11 A 357 LEU LEU LEU LYS ALA TRP ASP HIS TYR ASN SER THR LYS SEQRES 12 A 357 GLY SER ALA ASN ASP ARG PRO ASP PHE PHE LYS ASP ASP SEQRES 13 A 357 GLN LEU PHE ILE VAL LEU GLU PHE GLU PHE GLY GLY ILE SEQRES 14 A 357 ASP LEU GLU GLN MET ARG THR LYS LEU SER SER LEU ALA SEQRES 15 A 357 THR ALA LYS SER ILE LEU HIS GLN LEU THR ALA SER LEU SEQRES 16 A 357 ALA VAL ALA GLU ALA SER LEU ARG PHE GLU HIS ARG ASP SEQRES 17 A 357 LEU HIS TRP GLY ASN VAL LEU LEU LYS LYS THR SER LEU SEQRES 18 A 357 LYS LYS LEU HIS TYR THR LEU ASN GLY LYS SER SER THR SEQRES 19 A 357 ILE PRO SER CYS GLY LEU GLN VAL SER ILE ILE ASP TYR SEQRES 20 A 357 THR LEU SER ARG LEU GLU ARG ASP GLY ILE VAL VAL PHE SEQRES 21 A 357 CYS ASP VAL SER MET ASP GLU ASP LEU PHE THR GLY ASP SEQRES 22 A 357 GLY ASP TYR GLN PHE ASP ILE TYR ARG LEU MET LYS LYS SEQRES 23 A 357 GLU ASN ASN ASN ARG TRP GLY GLU TYR HIS PRO TYR SER SEQRES 24 A 357 ASN VAL LEU TRP LEU HIS TYR LEU THR ASP LYS MET LEU SEQRES 25 A 357 LYS GLN MET THR PHE LYS THR LYS CYS ASN THR PRO ALA SEQRES 26 A 357 MET LYS GLN ILE LYS ARG LYS ILE GLN GLU PHE HIS ARG SEQRES 27 A 357 THR MET LEU ASN PHE SER SER ALA THR ASP LEU LEU CYS SEQRES 28 A 357 GLN HIS SER LEU PHE LYS HET DZO A 1 24 HET NI A 799 1 HET EDO A 800 4 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HETNAM DZO 3-(3-AMINOPHENYL)-N-(3-CHLOROPHENYL)PYRAZOLO[1,5- HETNAM 2 DZO A]PYRIMIDIN-5-AMINE HETNAM NI NICKEL (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 DZO C18 H14 CL N5 FORMUL 3 NI NI 2+ FORMUL 4 EDO 7(C2 H6 O2) FORMUL 11 HOH *301(H2 O) HELIX 1 1 PHE A 475 LEU A 479 1 5 HELIX 2 2 PRO A 480 ARG A 486 1 7 HELIX 3 3 THR A 528 LEU A 544 1 17 HELIX 4 4 LEU A 545 GLU A 548 5 4 HELIX 5 5 PRO A 570 LYS A 584 1 15 HELIX 6 6 SER A 621 ARG A 644 1 24 HELIX 7 7 GLU A 708 THR A 712 5 5 HELIX 8 8 ASP A 716 ASN A 730 1 15 HELIX 9 9 PRO A 738 GLN A 755 1 18 HELIX 10 10 THR A 764 MET A 781 1 18 HELIX 11 11 LEU A 782 PHE A 784 5 3 HELIX 12 12 SER A 786 HIS A 794 1 9 HELIX 13 13 SER A 795 LYS A 798 5 4 SHEET 1 A 6 VAL A 473 PRO A 474 0 SHEET 2 A 6 LEU A 559 GLN A 566 1 O CYS A 564 N VAL A 473 SHEET 3 A 6 LEU A 599 GLU A 606 -1 O GLU A 604 N ASN A 560 SHEET 4 A 6 THR A 506 ILE A 515 -1 N ALA A 509 O PHE A 605 SHEET 5 A 6 GLY A 496 ALA A 503 -1 N PHE A 499 O ILE A 510 SHEET 6 A 6 GLU A 488 GLY A 493 -1 N GLU A 488 O GLN A 500 SHEET 1 B 3 ILE A 610 ASP A 611 0 SHEET 2 B 3 VAL A 655 LYS A 659 -1 O LEU A 657 N ILE A 610 SHEET 3 B 3 LEU A 681 ILE A 685 -1 O GLN A 682 N LYS A 658 SHEET 1 C 2 LYS A 664 LEU A 669 0 SHEET 2 C 2 LYS A 672 PRO A 677 -1 O ILE A 676 N LEU A 665 SHEET 1 D 2 ARG A 692 ARG A 695 0 SHEET 2 D 2 ILE A 698 PHE A 701 -1 O VAL A 700 N LEU A 693 LINK NE2 HIS A 477 NI NI A 799 1555 1555 2.31 LINK NE2 HIS A 563 NI NI A 799 1555 1555 2.41 LINK NI NI A 799 O HOH A 831 1555 1555 2.44 LINK NI NI A 799 O HOH A 968 1555 1555 2.25 SITE 1 AC1 13 ILE A 490 GLY A 491 PHE A 495 ALA A 509 SITE 2 AC1 13 PHE A 605 GLU A 606 GLY A 608 GLY A 609 SITE 3 AC1 13 ASP A 611 LEU A 656 ILE A 686 ASP A 687 SITE 4 AC1 13 HOH A1070 SITE 1 AC2 4 HIS A 477 HIS A 563 HOH A 831 HOH A 968 SITE 1 AC3 5 EDO A 7 GLU A 554 PHE A 556 GLU A 606 SITE 2 AC3 5 HOH A 808 SITE 1 AC4 6 THR A 553 GLY A 555 GLN A 631 SER A 635 SITE 2 AC4 6 GLN A 682 HOH A 814 SITE 1 AC5 6 SER A 568 TYR A 569 LEU A 574 ARG A 695 SITE 2 AC5 6 HOH A 805 HOH A 899 SITE 1 AC6 8 VAL A 508 ASN A 560 GLU A 604 GLU A 776 SITE 2 AC6 8 ARG A 779 THR A 780 HOH A 989 HOH A1007 SITE 1 AC7 5 LEU A 657 LYS A 658 LYS A 659 HOH A1020 SITE 2 AC7 5 HOH A1053 SITE 1 AC8 3 LYS A 771 GLN A 775 HIS A 778 SITE 1 AC9 10 GLU A 554 GLU A 606 LYS A 658 GLN A 682 SITE 2 AC9 10 SER A 684 EDO A 800 HOH A 808 HOH A 861 SITE 3 AC9 10 HOH A 930 HOH A1008 CRYST1 78.497 86.952 68.460 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014607 0.00000