HEADER TRANSCRIPTION REGULATOR 21-AUG-08 3E97 TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR OF CRP/FNR FAMILY TITLE 2 (YP_604437.1) FROM DEINOCOCCUS GEOTHERMALIS DSM 11300 AT 1.86 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS GEOTHERMALIS DSM 11300; SOURCE 3 ORGANISM_TAXID: 319795; SOURCE 4 GENE: YP_604437.1, DGEO_0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_604437.1, TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, DNA-BINDING, TRANSCRIPTION, KEYWDS 4 TRANSCRIPTION REGULATION, CYCLIC NUCLEOTIDE-BINDING DOMAIN, KEYWDS 5 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3E97 1 REMARK SEQADV REVDAT 4 24-JUL-19 3E97 1 REMARK LINK REVDAT 3 25-OCT-17 3E97 1 REMARK REVDAT 2 24-FEB-09 3E97 1 VERSN REVDAT 1 02-SEP-08 3E97 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR OF CRP/FNR JRNL TITL 2 FAMILY (YP_604437.1) FROM DEINOCOCCUS GEOTHERMALIS DSM 11300 JRNL TITL 3 AT 1.86 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : 1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.037 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1803 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1218 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2465 ; 1.458 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2978 ; 0.953 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 3.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;31.754 ;23.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;10.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;11.770 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2011 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 356 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 378 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1295 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 854 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 979 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.292 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1239 ; 2.034 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 454 ; 0.458 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1856 ; 2.960 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 687 ; 4.467 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 598 ; 6.283 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. 1,2-ETHANEDIOL FROM THE CRYOPROTECANT HAS BEEN MODELED. REMARK 4 REMARK 4 3E97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97929 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22704 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 29.399 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.45 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M KACETATE, 20.0000% PEG-3350, REMARK 280 NO BUFFER PH 7.8, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.72500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.86250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.58750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.86250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.58750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.72500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS REMARK 300 A DIMER AS THE OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 65 REMARK 465 GLY A 66 REMARK 465 PHE A 224 REMARK 465 GLU A 225 REMARK 465 GLY A 226 REMARK 465 ALA A 227 REMARK 465 GLU A 228 REMARK 465 THR A 229 REMARK 465 ASP A 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CD CE NZ REMARK 470 ARG A 9 NE CZ NH1 NH2 REMARK 470 LYS A 26 CD CE NZ REMARK 470 ARG A 67 CZ NH1 NH2 REMARK 470 HIS A 88 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 92 CB OG REMARK 470 ARG A 108 NE CZ NH1 NH2 REMARK 470 ARG A 120 NE CZ NH1 NH2 REMARK 470 GLU A 189 CD OE1 OE2 REMARK 470 ARG A 209 CD NE CZ NH1 NH2 REMARK 470 SER A 223 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 181 SE MSE A 181 CE -0.403 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 36 -2.30 79.09 REMARK 500 ALA A 44 43.46 -141.42 REMARK 500 SER A 92 77.84 -67.45 REMARK 500 GLN A 145 -75.49 -77.54 REMARK 500 GLN A 169 60.75 38.73 REMARK 500 GLN A 169 59.84 39.64 REMARK 500 LEU A 222 78.12 -62.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 232 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390750 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3E97 A 21 230 UNP Q1IZR6 Q1IZR6_DEIGD 1 210 SEQADV 3E97 GLY A 0 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 VAL A 1 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 GLY A 2 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 ARG A 3 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 LEU A 4 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 ASP A 5 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 ASP A 6 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 LEU A 7 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 LYS A 8 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 ARG A 9 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 SER A 10 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 PRO A 11 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 LEU A 12 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 PHE A 13 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 GLN A 14 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 ASN A 15 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 VAL A 16 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 PRO A 17 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 GLU A 18 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 ASP A 19 UNP Q1IZR6 EXPRESSION TAG SEQADV 3E97 ALA A 20 UNP Q1IZR6 EXPRESSION TAG SEQRES 1 A 231 GLY VAL GLY ARG LEU ASP ASP LEU LYS ARG SER PRO LEU SEQRES 2 A 231 PHE GLN ASN VAL PRO GLU ASP ALA MSE ARG GLU ALA LEU SEQRES 3 A 231 LYS VAL VAL THR GLU ARG ASN PHE GLN PRO ASP GLU LEU SEQRES 4 A 231 VAL VAL GLU GLN ASP ALA GLU GLY GLU ALA LEU HIS LEU SEQRES 5 A 231 VAL THR THR GLY VAL VAL ARG VAL SER ARG VAL SER LEU SEQRES 6 A 231 GLY GLY ARG GLU ARG VAL LEU GLY ASP ILE TYR ALA PRO SEQRES 7 A 231 GLY VAL VAL GLY GLU THR ALA VAL LEU ALA HIS GLN GLU SEQRES 8 A 231 ARG SER ALA SER VAL ARG ALA LEU THR PRO VAL ARG THR SEQRES 9 A 231 LEU MSE LEU HIS ARG GLU HIS PHE GLU LEU ILE LEU ARG SEQRES 10 A 231 ARG HIS PRO ARG VAL LEU TRP ASN LEU ALA GLU MSE LEU SEQRES 11 A 231 ALA ARG ARG VAL THR PHE LEU ASN ASP GLU LEU ILE ALA SEQRES 12 A 231 PHE GLY GLN ASN THR GLU ALA ALA LEU THR HIS VAL PHE SEQRES 13 A 231 ALA ASN LEU TYR ARG GLN ARG LEU ALA ALA GLY VAL PRO SEQRES 14 A 231 GLN PRO GLU VAL LEU PRO LEU GLY THR GLN ASP ILE MSE SEQRES 15 A 231 ALA ARG THR SER SER SER ARG GLU THR VAL SER ARG VAL SEQRES 16 A 231 LEU LYS ARG LEU GLU ALA HIS ASN ILE LEU GLU VAL SER SEQRES 17 A 231 PRO ARG SER VAL THR LEU LEU ASP LEU ALA ALA LEU GLU SEQRES 18 A 231 ALA LEU SER PHE GLU GLY ALA GLU THR ASP MODRES 3E97 MSE A 21 MET SELENOMETHIONINE MODRES 3E97 MSE A 105 MET SELENOMETHIONINE MODRES 3E97 MSE A 128 MET SELENOMETHIONINE MODRES 3E97 MSE A 181 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 105 13 HET MSE A 128 8 HET MSE A 181 8 HET EDO A 231 4 HET EDO A 232 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *188(H2 O) HELIX 1 1 ARG A 3 ARG A 9 1 7 HELIX 2 2 SER A 10 GLN A 14 5 5 HELIX 3 3 PRO A 17 VAL A 27 1 11 HELIX 4 4 HIS A 107 HIS A 118 1 12 HELIX 5 5 HIS A 118 ASN A 146 1 29 HELIX 6 6 ASN A 146 GLY A 166 1 21 HELIX 7 7 GLY A 176 SER A 185 1 10 HELIX 8 8 SER A 187 HIS A 201 1 15 HELIX 9 9 ASP A 215 LEU A 222 1 8 SHEET 1 A 4 THR A 29 PHE A 33 0 SHEET 2 A 4 VAL A 101 LEU A 106 -1 O THR A 103 N ARG A 31 SHEET 3 A 4 LEU A 49 VAL A 52 -1 N LEU A 49 O LEU A 106 SHEET 4 A 4 GLY A 78 VAL A 80 -1 O VAL A 80 N HIS A 50 SHEET 1 B 3 GLU A 68 TYR A 75 0 SHEET 2 B 3 VAL A 56 VAL A 62 -1 N VAL A 59 O GLY A 72 SHEET 3 B 3 ALA A 93 ALA A 97 -1 O SER A 94 N SER A 60 SHEET 1 C 3 VAL A 172 LEU A 173 0 SHEET 2 C 3 VAL A 211 LEU A 213 -1 O VAL A 211 N LEU A 173 SHEET 3 C 3 LEU A 204 VAL A 206 -1 N GLU A 205 O THR A 212 LINK C ALA A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N ARG A 22 1555 1555 1.34 LINK C LEU A 104 N MSE A 105 1555 1555 1.32 LINK C MSE A 105 N LEU A 106 1555 1555 1.33 LINK C GLU A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N LEU A 129 1555 1555 1.33 LINK C ILE A 180 N MSE A 181 1555 1555 1.33 LINK C MSE A 181 N ALA A 182 1555 1555 1.33 CISPEP 1 ALA A 76 PRO A 77 0 -3.50 SITE 1 AC1 6 TYR A 159 LEU A 213 LEU A 214 ASP A 215 SITE 2 AC1 6 LEU A 216 HOH A 406 SITE 1 AC2 4 HIS A 201 ASP A 215 HOH A 331 HOH A 416 CRYST1 68.000 68.000 111.450 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008973 0.00000