HEADER HYDROLASE 21-AUG-08 3E9C TITLE STRUCTURE OF A TRYPTIC CORE FRAGMENT OF TIGAR FROM DANIO RERIO COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZGC:56074; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRYPTIC CORE FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: ZGC:56074; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS HISTIDINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,G.JOGL REVDAT 3 25-OCT-17 3E9C 1 REMARK REVDAT 2 13-JUL-11 3E9C 1 VERSN REVDAT 1 16-DEC-08 3E9C 0 JRNL AUTH H.LI,G.JOGL JRNL TITL TIGAR (TP53 INDUCED GLYCOLYSIS AND APOPTOSIS REGULATOR) IS A JRNL TITL 2 FRUCTOSE-2,6- AND FRUCTOSE-1,6-BISPHOSPHATASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 483 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.183 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3219 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4340 ; 1.162 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 5.714 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;36.754 ;23.203 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;13.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.680 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2414 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1998 ; 0.726 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3216 ; 1.384 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1221 ; 2.117 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1124 ; 3.509 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 14 REMARK 3 RESIDUE RANGE : A 29 A 92 REMARK 3 RESIDUE RANGE : A 122 A 153 REMARK 3 RESIDUE RANGE : A 158 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5318 61.8781 0.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.0178 T22: 0.0423 REMARK 3 T33: 0.0046 T12: -0.0118 REMARK 3 T13: -0.0007 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8895 L22: 0.4833 REMARK 3 L33: 0.6760 L12: 0.1462 REMARK 3 L13: -0.3184 L23: -0.0196 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: -0.0166 S13: 0.0368 REMARK 3 S21: -0.0334 S22: -0.0005 S23: 0.0154 REMARK 3 S31: 0.0524 S32: 0.0466 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 14 REMARK 3 RESIDUE RANGE : B 29 B 92 REMARK 3 RESIDUE RANGE : B 119 B 148 REMARK 3 RESIDUE RANGE : B 160 B 250 REMARK 3 ORIGIN FOR THE GROUP (A): -67.1601 60.5815 11.6442 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: 0.0088 REMARK 3 T33: 0.0228 T12: -0.0002 REMARK 3 T13: 0.0068 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.2579 L22: 0.6571 REMARK 3 L33: 0.7303 L12: -0.0804 REMARK 3 L13: -0.2884 L23: -0.1209 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.0370 S13: 0.0437 REMARK 3 S21: 0.0188 S22: 0.0225 S23: 0.0477 REMARK 3 S31: -0.0191 S32: 0.0026 S33: -0.0160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47347 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.13, RESOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M POTASSIUM SODIUM TARTRATE, 100 MM REMARK 280 MES, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.50200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.25100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.37650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.12550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.62750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 15 REMARK 465 TYR A 16 REMARK 465 ASN A 17 REMARK 465 ARG A 18 REMARK 465 ASP A 19 REMARK 465 LYS A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 GLN A 23 REMARK 465 GLY A 24 REMARK 465 GLN A 25 REMARK 465 GLY A 26 REMARK 465 ILE A 27 REMARK 465 GLY A 93 REMARK 465 VAL A 94 REMARK 465 ALA A 95 REMARK 465 GLU A 96 REMARK 465 GLY A 97 REMARK 465 ARG A 98 REMARK 465 PRO A 99 REMARK 465 LYS A 100 REMARK 465 GLU A 101 REMARK 465 HIS A 102 REMARK 465 LEU A 103 REMARK 465 LYS A 104 REMARK 465 ASN A 105 REMARK 465 MET A 106 REMARK 465 ALA A 107 REMARK 465 ASN A 108 REMARK 465 ALA A 109 REMARK 465 ALA A 110 REMARK 465 GLY A 111 REMARK 465 GLN A 112 REMARK 465 SER A 113 REMARK 465 CYS A 114 REMARK 465 ARG A 115 REMARK 465 ASP A 116 REMARK 465 TYR A 117 REMARK 465 THR A 118 REMARK 465 PRO A 119 REMARK 465 PRO A 120 REMARK 465 GLY A 121 REMARK 465 VAL A 154 REMARK 465 PRO A 155 REMARK 465 SER A 156 REMARK 465 GLU A 157 REMARK 465 GLU A 251 REMARK 465 GLU A 252 REMARK 465 VAL A 253 REMARK 465 LYS A 254 REMARK 465 ASN A 255 REMARK 465 SER A 256 REMARK 465 ASP A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 MET B 1 REMARK 465 GLN B 15 REMARK 465 TYR B 16 REMARK 465 ASN B 17 REMARK 465 ARG B 18 REMARK 465 ASP B 19 REMARK 465 LYS B 20 REMARK 465 LEU B 21 REMARK 465 LEU B 22 REMARK 465 GLN B 23 REMARK 465 GLY B 24 REMARK 465 GLN B 25 REMARK 465 GLY B 26 REMARK 465 ILE B 27 REMARK 465 GLY B 93 REMARK 465 VAL B 94 REMARK 465 ALA B 95 REMARK 465 GLU B 96 REMARK 465 GLY B 97 REMARK 465 ARG B 98 REMARK 465 PRO B 99 REMARK 465 LYS B 100 REMARK 465 GLU B 101 REMARK 465 HIS B 102 REMARK 465 LEU B 103 REMARK 465 LYS B 104 REMARK 465 ASN B 105 REMARK 465 MET B 106 REMARK 465 ALA B 107 REMARK 465 ASN B 108 REMARK 465 ALA B 109 REMARK 465 ALA B 110 REMARK 465 GLY B 111 REMARK 465 GLN B 112 REMARK 465 SER B 113 REMARK 465 CYS B 114 REMARK 465 ARG B 115 REMARK 465 ASP B 116 REMARK 465 TYR B 117 REMARK 465 THR B 118 REMARK 465 SER B 149 REMARK 465 ALA B 150 REMARK 465 LEU B 151 REMARK 465 SER B 152 REMARK 465 SER B 153 REMARK 465 VAL B 154 REMARK 465 PRO B 155 REMARK 465 SER B 156 REMARK 465 GLU B 157 REMARK 465 ALA B 158 REMARK 465 ASP B 159 REMARK 465 GLU B 251 REMARK 465 GLU B 252 REMARK 465 VAL B 253 REMARK 465 LYS B 254 REMARK 465 ASN B 255 REMARK 465 SER B 256 REMARK 465 ASP B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 278 O HOH A 478 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 192 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 182 -153.87 -147.31 REMARK 500 THR A 218 17.96 58.79 REMARK 500 SER A 232 -14.13 72.42 REMARK 500 VAL A 242 -63.16 -109.14 REMARK 500 SER B 182 -154.84 -148.42 REMARK 500 LYS B 247 36.81 -141.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 267 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 195 O REMARK 620 2 LEU A 198 O 84.8 REMARK 620 3 PRO B 203 O 168.2 88.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 266 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 202 O REMARK 620 2 PRO A 203 O 69.3 REMARK 620 3 VAL B 195 O 118.4 171.0 REMARK 620 4 GLU B 196 O 152.5 87.7 83.6 REMARK 620 5 LEU B 198 O 78.9 88.0 89.0 85.7 REMARK 620 6 HOH A 282 O 116.4 93.0 87.5 78.3 163.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 267 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DCY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE A TP53-INDUCED GLYCOLYSIS AND APOPTOSIS REGULATOR REMARK 900 PROTEIN FROM HOMO SAPIENS. REMARK 900 RELATED ID: 3E9D RELATED DB: PDB REMARK 900 RELATED ID: 3E9E RELATED DB: PDB DBREF 3E9C A 1 257 UNP Q7ZVE3 Q7ZVE3_DANRE 1 257 DBREF 3E9C B 1 257 UNP Q7ZVE3 Q7ZVE3_DANRE 1 257 SEQADV 3E9C LEU A 258 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C GLU A 259 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS A 260 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS A 261 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS A 262 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS A 263 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS A 264 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS A 265 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C LEU B 258 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C GLU B 259 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS B 260 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS B 261 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS B 262 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS B 263 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS B 264 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9C HIS B 265 UNP Q7ZVE3 EXPRESSION TAG SEQRES 1 A 265 MET LEU THR PHE ALA LEU THR ILE VAL ARG HIS GLY GLU SEQRES 2 A 265 THR GLN TYR ASN ARG ASP LYS LEU LEU GLN GLY GLN GLY SEQRES 3 A 265 ILE ASP THR PRO LEU SER ASP THR GLY HIS GLN GLN ALA SEQRES 4 A 265 ALA ALA ALA GLY ARG TYR LEU LYS ASP LEU HIS PHE THR SEQRES 5 A 265 ASN VAL PHE VAL SER ASN LEU GLN ARG ALA ILE GLN THR SEQRES 6 A 265 ALA GLU ILE ILE LEU GLY ASN ASN LEU HIS SER SER ALA SEQRES 7 A 265 THR GLU MET ILE LEU ASP PRO LEU LEU ARG GLU ARG GLY SEQRES 8 A 265 PHE GLY VAL ALA GLU GLY ARG PRO LYS GLU HIS LEU LYS SEQRES 9 A 265 ASN MET ALA ASN ALA ALA GLY GLN SER CYS ARG ASP TYR SEQRES 10 A 265 THR PRO PRO GLY GLY GLU THR LEU GLU GLN VAL LYS THR SEQRES 11 A 265 ARG PHE LYS MET PHE LEU LYS SER LEU PHE GLN ARG MET SEQRES 12 A 265 PHE GLU GLU HIS GLY SER ALA LEU SER SER VAL PRO SER SEQRES 13 A 265 GLU ALA ASP GLN PRO VAL ILE ALA GLY LEU ALA ASP ASP SEQRES 14 A 265 GLY ALA GLN ASN VAL PRO VAL HIS ALA LEU MET VAL SER SEQRES 15 A 265 HIS GLY ALA PHE ILE ARG ILE SER VAL ARG HIS LEU VAL SEQRES 16 A 265 GLU ASP LEU GLN CYS CYS LEU PRO ALA GLY LEU LYS MET SEQRES 17 A 265 ASN GLN VAL PHE SER PRO CYS PRO ASN THR GLY ILE SER SEQRES 18 A 265 ARG PHE ILE PHE THR ILE HIS ARG GLU GLU SER VAL LEU SEQRES 19 A 265 ARG ALA THR ARG ILE GLN GLY VAL PHE ILE ASN ARG LYS SEQRES 20 A 265 ASP HIS LEU GLU GLU VAL LYS ASN SER ASP LEU GLU HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MET LEU THR PHE ALA LEU THR ILE VAL ARG HIS GLY GLU SEQRES 2 B 265 THR GLN TYR ASN ARG ASP LYS LEU LEU GLN GLY GLN GLY SEQRES 3 B 265 ILE ASP THR PRO LEU SER ASP THR GLY HIS GLN GLN ALA SEQRES 4 B 265 ALA ALA ALA GLY ARG TYR LEU LYS ASP LEU HIS PHE THR SEQRES 5 B 265 ASN VAL PHE VAL SER ASN LEU GLN ARG ALA ILE GLN THR SEQRES 6 B 265 ALA GLU ILE ILE LEU GLY ASN ASN LEU HIS SER SER ALA SEQRES 7 B 265 THR GLU MET ILE LEU ASP PRO LEU LEU ARG GLU ARG GLY SEQRES 8 B 265 PHE GLY VAL ALA GLU GLY ARG PRO LYS GLU HIS LEU LYS SEQRES 9 B 265 ASN MET ALA ASN ALA ALA GLY GLN SER CYS ARG ASP TYR SEQRES 10 B 265 THR PRO PRO GLY GLY GLU THR LEU GLU GLN VAL LYS THR SEQRES 11 B 265 ARG PHE LYS MET PHE LEU LYS SER LEU PHE GLN ARG MET SEQRES 12 B 265 PHE GLU GLU HIS GLY SER ALA LEU SER SER VAL PRO SER SEQRES 13 B 265 GLU ALA ASP GLN PRO VAL ILE ALA GLY LEU ALA ASP ASP SEQRES 14 B 265 GLY ALA GLN ASN VAL PRO VAL HIS ALA LEU MET VAL SER SEQRES 15 B 265 HIS GLY ALA PHE ILE ARG ILE SER VAL ARG HIS LEU VAL SEQRES 16 B 265 GLU ASP LEU GLN CYS CYS LEU PRO ALA GLY LEU LYS MET SEQRES 17 B 265 ASN GLN VAL PHE SER PRO CYS PRO ASN THR GLY ILE SER SEQRES 18 B 265 ARG PHE ILE PHE THR ILE HIS ARG GLU GLU SER VAL LEU SEQRES 19 B 265 ARG ALA THR ARG ILE GLN GLY VAL PHE ILE ASN ARG LYS SEQRES 20 B 265 ASP HIS LEU GLU GLU VAL LYS ASN SER ASP LEU GLU HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS HET K A 266 1 HET K A 267 1 HETNAM K POTASSIUM ION FORMUL 3 K 2(K 1+) FORMUL 5 HOH *483(H2 O) HELIX 1 1 SER A 32 LEU A 46 1 15 HELIX 2 2 LEU A 59 ASN A 72 1 14 HELIX 3 3 PRO A 85 ARG A 88 5 4 HELIX 4 4 THR A 124 GLY A 148 1 25 HELIX 5 5 HIS A 183 ASP A 197 1 15 HELIX 6 6 LYS A 207 PHE A 212 1 6 HELIX 7 7 SER B 32 LEU B 46 1 15 HELIX 8 8 LEU B 59 ASN B 72 1 14 HELIX 9 9 PRO B 85 ARG B 88 5 4 HELIX 10 10 THR B 124 GLY B 148 1 25 HELIX 11 11 HIS B 183 ASP B 197 1 15 HELIX 12 12 LYS B 207 PHE B 212 1 6 SHEET 1 A 6 MET A 81 LEU A 83 0 SHEET 2 A 6 ASN A 53 VAL A 56 1 N VAL A 54 O ILE A 82 SHEET 3 A 6 HIS A 177 SER A 182 1 O LEU A 179 N PHE A 55 SHEET 4 A 6 LEU A 2 ARG A 10 1 N THR A 7 O ALA A 178 SHEET 5 A 6 ILE A 220 GLU A 230 -1 O ILE A 227 N LEU A 2 SHEET 6 A 6 VAL A 233 ARG A 246 -1 O VAL A 233 N GLU A 230 SHEET 1 B 2 CYS A 200 LEU A 202 0 SHEET 2 B 2 CYS B 200 LEU B 202 -1 O LEU B 202 N CYS A 200 SHEET 1 C 6 MET B 81 LEU B 83 0 SHEET 2 C 6 ASN B 53 VAL B 56 1 N VAL B 54 O ILE B 82 SHEET 3 C 6 HIS B 177 SER B 182 1 O LEU B 179 N PHE B 55 SHEET 4 C 6 THR B 3 ARG B 10 1 N ALA B 5 O ALA B 178 SHEET 5 C 6 ILE B 220 GLU B 230 -1 O SER B 221 N ILE B 8 SHEET 6 C 6 VAL B 233 ARG B 246 -1 O VAL B 233 N GLU B 230 SSBOND 1 CYS A 201 CYS B 201 1555 1555 2.12 LINK O VAL A 195 K K A 267 1555 1555 2.65 LINK O LEU A 198 K K A 267 1555 1555 2.69 LINK O LEU A 202 K K A 266 1555 1555 2.89 LINK O PRO A 203 K K A 266 1555 1555 2.78 LINK O VAL B 195 K K A 266 1555 1555 2.73 LINK O GLU B 196 K K A 266 1555 1555 2.93 LINK O LEU B 198 K K A 266 1555 1555 2.59 LINK O PRO B 203 K K A 267 1555 1555 2.78 LINK K K A 266 O HOH A 282 1555 1555 2.72 CISPEP 1 PRO B 120 GLY B 121 0 -24.70 SITE 1 AC1 6 LEU A 202 PRO A 203 HOH A 282 VAL B 195 SITE 2 AC1 6 GLU B 196 LEU B 198 SITE 1 AC2 5 VAL A 195 GLU A 196 LEU A 198 LEU B 202 SITE 2 AC2 5 PRO B 203 CRYST1 136.672 136.672 66.753 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007317 0.004224 0.000000 0.00000 SCALE2 0.000000 0.008449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014981 0.00000