HEADER HYDROLASE 21-AUG-08 3E9D TITLE STRUCTURE OF FULL-LENGTH TIGAR FROM DANIO RERIO COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZGC:56074; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: ZGC:56074; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS HISTIDINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,G.JOGL REVDAT 3 25-OCT-17 3E9D 1 REMARK REVDAT 2 13-JUL-11 3E9D 1 VERSN REVDAT 1 16-DEC-08 3E9D 0 JRNL AUTH H.LI,G.JOGL JRNL TITL TIGAR (TP53 INDUCED GLYCOLYSIS AND APOPTOSIS REGULATOR) IS A JRNL TITL 2 FRUCTOSE-2,6- AND FRUCTOSE-1,6-BISPHOSPHATASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 56186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 698 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.363 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3915 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5287 ; 1.140 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 5.526 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;36.786 ;23.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 678 ;12.796 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;14.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2968 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2430 ; 0.736 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3905 ; 1.406 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1485 ; 2.163 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1382 ; 3.613 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7608 -17.8219 14.2836 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0125 REMARK 3 T33: 0.0046 T12: -0.0020 REMARK 3 T13: -0.0086 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.7514 L22: 0.5751 REMARK 3 L33: 0.4831 L12: -0.2627 REMARK 3 L13: -0.1395 L23: 0.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.0184 S13: 0.0387 REMARK 3 S21: -0.0253 S22: 0.0376 S23: -0.0221 REMARK 3 S31: 0.0107 S32: -0.0001 S33: -0.0208 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 148 REMARK 3 RESIDUE RANGE : B 160 B 250 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8139 18.4954 12.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.0226 T22: 0.0054 REMARK 3 T33: 0.0121 T12: -0.0050 REMARK 3 T13: 0.0101 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.5607 L22: 0.8353 REMARK 3 L33: 0.8954 L12: 0.3001 REMARK 3 L13: 0.1896 L23: 0.0990 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: 0.0175 S13: 0.0082 REMARK 3 S21: 0.0775 S22: 0.0291 S23: 0.0538 REMARK 3 S31: 0.0328 S32: 0.0094 S33: -0.0626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M SODIUM PHOSPHATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.83050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.77050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.83050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.77050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 251 REMARK 465 GLU A 252 REMARK 465 VAL A 253 REMARK 465 LYS A 254 REMARK 465 ASN A 255 REMARK 465 SER A 256 REMARK 465 ASP A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 SER B 149 REMARK 465 ALA B 150 REMARK 465 LEU B 151 REMARK 465 SER B 152 REMARK 465 SER B 153 REMARK 465 VAL B 154 REMARK 465 PRO B 155 REMARK 465 SER B 156 REMARK 465 GLU B 157 REMARK 465 ALA B 158 REMARK 465 ASP B 159 REMARK 465 GLU B 252 REMARK 465 VAL B 253 REMARK 465 LYS B 254 REMARK 465 ASN B 255 REMARK 465 SER B 256 REMARK 465 ASP B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 143 O HOH A 611 1.89 REMARK 500 OE1 GLN A 23 OG1 THR A 29 1.92 REMARK 500 OG1 THR A 7 NH1 ARG A 222 2.02 REMARK 500 O HOH A 356 O HOH A 620 2.03 REMARK 500 O HOH B 327 O HOH B 579 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 57.72 -97.56 REMARK 500 SER A 182 -147.82 -150.19 REMARK 500 LYS A 247 34.06 -141.29 REMARK 500 SER B 182 -145.88 -145.20 REMARK 500 GLU B 231 81.69 -161.22 REMARK 500 SER B 232 19.96 57.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 268 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 195 O REMARK 620 2 LEU A 198 O 82.4 REMARK 620 3 PRO B 203 O 164.7 91.3 REMARK 620 4 HOH B 292 O 86.3 159.3 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 268 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 202 O REMARK 620 2 PRO A 203 O 69.3 REMARK 620 3 VAL B 195 O 120.3 168.3 REMARK 620 4 LEU B 198 O 83.6 90.2 84.6 REMARK 620 5 HOH A 305 O 112.8 94.0 88.2 163.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 268 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DCY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE A TP53-INDUCED GLYCOLYSIS AND APOPTOSIS REGULATOR REMARK 900 PROTEIN FROM HOMO SAPIENS. REMARK 900 RELATED ID: 3E9C RELATED DB: PDB REMARK 900 STRUCTURE OF A TRYPTIC CORE FRAGMENT OF TIGAR FROM DANIO RERIO REMARK 900 RELATED ID: 3E9E RELATED DB: PDB DBREF 3E9D A 1 257 UNP Q7ZVE3 Q7ZVE3_DANRE 1 257 DBREF 3E9D B 1 257 UNP Q7ZVE3 Q7ZVE3_DANRE 1 257 SEQADV 3E9D LEU A 258 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D GLU A 259 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS A 260 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS A 261 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS A 262 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS A 263 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS A 264 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS A 265 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D LEU B 258 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D GLU B 259 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS B 260 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS B 261 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS B 262 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS B 263 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS B 264 UNP Q7ZVE3 EXPRESSION TAG SEQADV 3E9D HIS B 265 UNP Q7ZVE3 EXPRESSION TAG SEQRES 1 A 265 MET LEU THR PHE ALA LEU THR ILE VAL ARG HIS GLY GLU SEQRES 2 A 265 THR GLN TYR ASN ARG ASP LYS LEU LEU GLN GLY GLN GLY SEQRES 3 A 265 ILE ASP THR PRO LEU SER ASP THR GLY HIS GLN GLN ALA SEQRES 4 A 265 ALA ALA ALA GLY ARG TYR LEU LYS ASP LEU HIS PHE THR SEQRES 5 A 265 ASN VAL PHE VAL SER ASN LEU GLN ARG ALA ILE GLN THR SEQRES 6 A 265 ALA GLU ILE ILE LEU GLY ASN ASN LEU HIS SER SER ALA SEQRES 7 A 265 THR GLU MET ILE LEU ASP PRO LEU LEU ARG GLU ARG GLY SEQRES 8 A 265 PHE GLY VAL ALA GLU GLY ARG PRO LYS GLU HIS LEU LYS SEQRES 9 A 265 ASN MET ALA ASN ALA ALA GLY GLN SER CYS ARG ASP TYR SEQRES 10 A 265 THR PRO PRO GLY GLY GLU THR LEU GLU GLN VAL LYS THR SEQRES 11 A 265 ARG PHE LYS MET PHE LEU LYS SER LEU PHE GLN ARG MET SEQRES 12 A 265 PHE GLU GLU HIS GLY SER ALA LEU SER SER VAL PRO SER SEQRES 13 A 265 GLU ALA ASP GLN PRO VAL ILE ALA GLY LEU ALA ASP ASP SEQRES 14 A 265 GLY ALA GLN ASN VAL PRO VAL HIS ALA LEU MET VAL SER SEQRES 15 A 265 HIS GLY ALA PHE ILE ARG ILE SER VAL ARG HIS LEU VAL SEQRES 16 A 265 GLU ASP LEU GLN CYS CYS LEU PRO ALA GLY LEU LYS MET SEQRES 17 A 265 ASN GLN VAL PHE SER PRO CYS PRO ASN THR GLY ILE SER SEQRES 18 A 265 ARG PHE ILE PHE THR ILE HIS ARG GLU GLU SER VAL LEU SEQRES 19 A 265 ARG ALA THR ARG ILE GLN GLY VAL PHE ILE ASN ARG LYS SEQRES 20 A 265 ASP HIS LEU GLU GLU VAL LYS ASN SER ASP LEU GLU HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MET LEU THR PHE ALA LEU THR ILE VAL ARG HIS GLY GLU SEQRES 2 B 265 THR GLN TYR ASN ARG ASP LYS LEU LEU GLN GLY GLN GLY SEQRES 3 B 265 ILE ASP THR PRO LEU SER ASP THR GLY HIS GLN GLN ALA SEQRES 4 B 265 ALA ALA ALA GLY ARG TYR LEU LYS ASP LEU HIS PHE THR SEQRES 5 B 265 ASN VAL PHE VAL SER ASN LEU GLN ARG ALA ILE GLN THR SEQRES 6 B 265 ALA GLU ILE ILE LEU GLY ASN ASN LEU HIS SER SER ALA SEQRES 7 B 265 THR GLU MET ILE LEU ASP PRO LEU LEU ARG GLU ARG GLY SEQRES 8 B 265 PHE GLY VAL ALA GLU GLY ARG PRO LYS GLU HIS LEU LYS SEQRES 9 B 265 ASN MET ALA ASN ALA ALA GLY GLN SER CYS ARG ASP TYR SEQRES 10 B 265 THR PRO PRO GLY GLY GLU THR LEU GLU GLN VAL LYS THR SEQRES 11 B 265 ARG PHE LYS MET PHE LEU LYS SER LEU PHE GLN ARG MET SEQRES 12 B 265 PHE GLU GLU HIS GLY SER ALA LEU SER SER VAL PRO SER SEQRES 13 B 265 GLU ALA ASP GLN PRO VAL ILE ALA GLY LEU ALA ASP ASP SEQRES 14 B 265 GLY ALA GLN ASN VAL PRO VAL HIS ALA LEU MET VAL SER SEQRES 15 B 265 HIS GLY ALA PHE ILE ARG ILE SER VAL ARG HIS LEU VAL SEQRES 16 B 265 GLU ASP LEU GLN CYS CYS LEU PRO ALA GLY LEU LYS MET SEQRES 17 B 265 ASN GLN VAL PHE SER PRO CYS PRO ASN THR GLY ILE SER SEQRES 18 B 265 ARG PHE ILE PHE THR ILE HIS ARG GLU GLU SER VAL LEU SEQRES 19 B 265 ARG ALA THR ARG ILE GLN GLY VAL PHE ILE ASN ARG LYS SEQRES 20 B 265 ASP HIS LEU GLU GLU VAL LYS ASN SER ASP LEU GLU HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS HET PO4 A 266 5 HET PO4 A 267 5 HET K A 268 1 HET PO4 B 266 5 HET PO4 B 267 5 HET K B 268 1 HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 K 2(K 1+) FORMUL 9 HOH *698(H2 O) HELIX 1 1 THR A 14 ASP A 19 1 6 HELIX 2 2 SER A 32 LEU A 46 1 15 HELIX 3 3 LEU A 59 ASN A 72 1 14 HELIX 4 4 PRO A 85 ARG A 88 5 4 HELIX 5 5 PHE A 92 GLU A 96 5 5 HELIX 6 6 PRO A 99 GLY A 111 1 13 HELIX 7 7 THR A 124 HIS A 147 1 24 HELIX 8 8 GLY A 148 LEU A 151 5 4 HELIX 9 9 HIS A 183 ASP A 197 1 15 HELIX 10 10 LYS A 207 PHE A 212 1 6 HELIX 11 11 THR B 14 ASP B 19 1 6 HELIX 12 12 SER B 32 LEU B 46 1 15 HELIX 13 13 LEU B 59 ASN B 72 1 14 HELIX 14 14 PRO B 85 ARG B 88 5 4 HELIX 15 15 PHE B 92 GLU B 96 5 5 HELIX 16 16 PRO B 99 ALA B 110 1 12 HELIX 17 17 THR B 124 GLY B 148 1 25 HELIX 18 18 HIS B 183 GLU B 196 1 14 HELIX 19 19 LYS B 207 PHE B 212 1 6 HELIX 20 20 LYS B 247 GLU B 251 5 5 SHEET 1 A 6 MET A 81 LEU A 83 0 SHEET 2 A 6 ASN A 53 VAL A 56 1 N VAL A 54 O ILE A 82 SHEET 3 A 6 HIS A 177 SER A 182 1 O LEU A 179 N PHE A 55 SHEET 4 A 6 LEU A 2 ARG A 10 1 N ALA A 5 O ALA A 178 SHEET 5 A 6 ILE A 220 GLU A 230 -1 O PHE A 223 N LEU A 6 SHEET 6 A 6 VAL A 233 ARG A 246 -1 O ARG A 235 N HIS A 228 SHEET 1 B 2 CYS A 200 LEU A 202 0 SHEET 2 B 2 CYS B 200 LEU B 202 -1 O LEU B 202 N CYS A 200 SHEET 1 C 6 MET B 81 LEU B 83 0 SHEET 2 C 6 ASN B 53 VAL B 56 1 N VAL B 54 O ILE B 82 SHEET 3 C 6 HIS B 177 SER B 182 1 O LEU B 179 N PHE B 55 SHEET 4 C 6 LEU B 2 ARG B 10 1 N ALA B 5 O ALA B 178 SHEET 5 C 6 ILE B 220 ARG B 229 -1 O ILE B 227 N LEU B 2 SHEET 6 C 6 LEU B 234 ARG B 246 -1 O ARG B 235 N HIS B 228 SSBOND 1 CYS A 201 CYS B 201 1555 1555 2.11 LINK O VAL A 195 K K A 268 1555 1555 2.68 LINK O LEU A 198 K K A 268 1555 1555 2.66 LINK O LEU A 202 K K B 268 1555 1555 2.97 LINK O PRO A 203 K K B 268 1555 1555 2.82 LINK O VAL B 195 K K B 268 1555 1555 2.64 LINK O LEU B 198 K K B 268 1555 1555 2.67 LINK O PRO B 203 K K A 268 1555 1555 2.74 LINK K K A 268 O HOH B 292 1555 1555 2.79 LINK K K B 268 O HOH A 305 1555 1555 2.63 SITE 1 AC1 9 ARG A 10 HIS A 11 ASN A 17 GLN A 23 SITE 2 AC1 9 ARG A 61 GLU A 89 HIS A 183 GLY A 184 SITE 3 AC1 9 HOH A 432 SITE 1 AC2 10 ARG A 10 ASN A 17 ASN A 217 HOH A 309 SITE 2 AC2 10 HOH A 425 HOH A 445 HOH A 496 HOH A 535 SITE 3 AC2 10 HOH A 550 HOH A 552 SITE 1 AC3 6 VAL A 195 GLU A 196 LEU A 198 LEU B 202 SITE 2 AC3 6 PRO B 203 HOH B 292 SITE 1 AC4 9 ARG B 10 HIS B 11 ASN B 17 GLN B 23 SITE 2 AC4 9 ARG B 61 GLU B 89 HIS B 183 GLY B 184 SITE 3 AC4 9 HOH B 409 SITE 1 AC5 10 ARG B 10 ASN B 17 ASN B 217 HOH B 348 SITE 2 AC5 10 HOH B 377 HOH B 389 HOH B 442 HOH B 496 SITE 3 AC5 10 HOH B 510 HOH B 542 SITE 1 AC6 6 LEU A 202 PRO A 203 HOH A 305 VAL B 195 SITE 2 AC6 6 GLU B 196 LEU B 198 CRYST1 127.661 115.541 61.311 90.00 104.66 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007833 0.000000 0.002049 0.00000 SCALE2 0.000000 0.008655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016859 0.00000