HEADER TRANSFERASE 28-AUG-08 3EBU TITLE REPLACEMENT OF VAL3 IN HUMAN THYMIDYLATE SYNTHASE AFFECTS ITS KINETIC TITLE 2 PROPERTIES AND INTRACELLULAR STABILITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TSASE, TS; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OK/SW-CL.29, TS, TYMS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TX61-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASIMD; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTSO80 KEYWDS TRANSFERASE, METHYLTRANSFERASE, NUCLEOTIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR X.HUANG,L.M.GIBSON,B.J.BELL,L.L.LOVELACE,M.M.PENA,F.G.BERGER, AUTHOR 2 S.H.BERGER REVDAT 6 09-OCT-24 3EBU 1 REMARK REVDAT 5 30-AUG-23 3EBU 1 REMARK REVDAT 4 20-OCT-21 3EBU 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3EBU 1 REMARK REVDAT 2 31-MAR-10 3EBU 1 JRNL REVDAT 1 02-MAR-10 3EBU 0 JRNL AUTH X.HUANG,L.M.GIBSON,B.J.BELL,L.L.LOVELACE,M.M.PENA, JRNL AUTH 2 F.G.BERGER,S.H.BERGER,L.LEBIODA JRNL TITL REPLACEMENT OF VAL3 IN HUMAN THYMIDYLATE SYNTHASE AFFECTS JRNL TITL 2 ITS KINETIC PROPERTIES AND INTRACELLULAR STABILITY . JRNL REF BIOCHEMISTRY V. 49 2475 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20151707 JRNL DOI 10.1021/BI901457E REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 25503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2524 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.93800 REMARK 3 B22 (A**2) : -13.93800 REMARK 3 B33 (A**2) : 27.87500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.886 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.806 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.082 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.278 ; 3.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 76.01 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAMHICUP REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOPHICUP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1HW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 35-40%AMMONIUM REMARK 280 SULFATE, 20MM BME, PH 8.5 , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.20533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.41067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.41067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.20533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.41067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 GLU A 19 REMARK 465 ARG A 20 REMARK 465 ASP A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 25 REMARK 465 SER A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 LYS A 107 REMARK 465 ILE A 108 REMARK 465 TRP A 109 REMARK 465 ASP A 110 REMARK 465 ALA A 111 REMARK 465 ASN A 112 REMARK 465 GLY A 113 REMARK 465 SER A 114 REMARK 465 ARG A 115 REMARK 465 ASP A 116 REMARK 465 PHE A 117 REMARK 465 LEU A 118 REMARK 465 ASP A 119 REMARK 465 SER A 120 REMARK 465 LEU A 121 REMARK 465 GLY A 122 REMARK 465 PHE A 123 REMARK 465 SER A 124 REMARK 465 THR A 125 REMARK 465 ARG A 126 REMARK 465 GLU A 127 REMARK 465 GLU A 128 REMARK 465 MET A 311 REMARK 465 ALA A 312 REMARK 465 VAL A 313 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 310 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 328 O HOH A 488 2.02 REMARK 500 O HOH A 403 O HOH A 493 2.10 REMARK 500 O MET A 309 O HOH A 478 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CME A 180 OH CME A 195 5555 2.11 REMARK 500 O HOH A 397 O HOH A 397 5555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 199 CB CYS A 199 SG -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 61 CG - SD - CE ANGL. DEV. = -11.3 DEGREES REMARK 500 LEU A 252 CB - CG - CD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 133 131.76 -30.23 REMARK 500 ARG A 147 -87.60 -87.54 REMARK 500 SER A 154 129.17 -39.66 REMARK 500 ASN A 171 82.70 -150.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HW3 RELATED DB: PDB REMARK 900 RELATED ID: 1YPV RELATED DB: PDB REMARK 900 RELATED ID: 3EAW RELATED DB: PDB REMARK 900 RELATED ID: 3ED7 RELATED DB: PDB REMARK 900 RELATED ID: 3EDW RELATED DB: PDB REMARK 900 RELATED ID: 3EF9 RELATED DB: PDB REMARK 900 RELATED ID: 3EJL RELATED DB: PDB REMARK 900 RELATED ID: 3GG5 RELATED DB: PDB REMARK 900 RELATED ID: 3GH0 RELATED DB: PDB REMARK 900 RELATED ID: 3GH2 RELATED DB: PDB DBREF 3EBU A 1 313 UNP P04818 TYSY_HUMAN 1 313 SEQADV 3EBU THR A 3 UNP P04818 VAL 3 ENGINEERED MUTATION SEQRES 1 A 313 MET PRO THR ALA GLY SER GLU LEU PRO ARG ARG PRO LEU SEQRES 2 A 313 PRO PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO SEQRES 3 A 313 PRO HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS SEQRES 4 A 313 ILE LEU ARG CME GLY VAL ARG LYS ASP ASP ARG THR GLY SEQRES 5 A 313 THR GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SEQRES 6 A 313 SER LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG SEQRES 7 A 313 VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE SEQRES 8 A 313 ILE LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS SEQRES 9 A 313 GLY VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE SEQRES 10 A 313 LEU ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP SEQRES 11 A 313 LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY SEQRES 12 A 313 ALA GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN SEQRES 13 A 313 GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS SEQRES 14 A 313 THR ASN PRO ASP ASP ARG ARG ILE ILE MET CME ALA TRP SEQRES 15 A 313 ASN PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO CME SEQRES 16 A 313 HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SEQRES 17 A 313 SER CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU SEQRES 18 A 313 GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR SEQRES 19 A 313 TYR MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP SEQRES 20 A 313 PHE ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN SEQRES 21 A 313 HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO SEQRES 22 A 313 ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU SEQRES 23 A 313 LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU SEQRES 24 A 313 GLY TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA SEQRES 25 A 313 VAL MODRES 3EBU CME A 43 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3EBU CME A 180 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3EBU CME A 195 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 43 10 HET CME A 180 10 HET CME A 195 10 HET SO4 A 315 5 HET SO4 A 316 5 HET SO4 A 317 5 HET EDO A 314 4 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CME 3(C5 H11 N O3 S2) FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *180(H2 O) HELIX 1 1 GLY A 29 GLY A 44 1 16 HELIX 2 2 PHE A 80 LYS A 93 1 14 HELIX 3 3 ASN A 97 LEU A 101 5 5 HELIX 4 4 GLY A 136 HIS A 141 1 6 HELIX 5 5 ASP A 159 ASN A 171 1 13 HELIX 6 6 ASN A 183 LEU A 187 5 5 HELIX 7 7 LEU A 221 THR A 241 1 21 HELIX 8 8 HIS A 261 LEU A 269 1 9 HELIX 9 9 LYS A 287 PHE A 291 5 5 HELIX 10 10 LYS A 292 GLU A 294 5 3 SHEET 1 A 6 VAL A 45 ASP A 48 0 SHEET 2 A 6 GLY A 54 SER A 66 -1 O SER A 57 N VAL A 45 SHEET 3 A 6 LYS A 244 TYR A 258 -1 O PHE A 248 N TYR A 65 SHEET 4 A 6 GLU A 207 ASP A 218 1 N GLY A 217 O ASP A 254 SHEET 5 A 6 ALA A 197 VAL A 204 -1 N LEU A 198 O TYR A 213 SHEET 6 A 6 ILE A 178 ALA A 181 -1 N MET A 179 O CYS A 199 SHEET 1 B 2 LYS A 278 ILE A 281 0 SHEET 2 B 2 PHE A 296 GLU A 299 -1 O GLU A 299 N LYS A 278 LINK C ARG A 42 N CME A 43 1555 1555 1.34 LINK C CME A 43 N GLY A 44 1555 1555 1.33 LINK C MET A 179 N CME A 180 1555 1555 1.34 LINK C CME A 180 N ALA A 181 1555 1555 1.35 LINK C PRO A 194 N CME A 195 1555 1555 1.34 LINK C CME A 195 N HIS A 196 1555 1555 1.33 SITE 1 AC1 5 GLU A 272 ARG A 274 HIS A 304 HOH A 435 SITE 2 AC1 5 HOH A 436 SITE 1 AC2 7 ARG A 50 ARG A 78 ARG A 176 ARG A 185 SITE 2 AC2 7 LEU A 189 PRO A 305 THR A 306 SITE 1 AC3 5 ARG A 175 ASN A 183 HIS A 196 ARG A 215 SITE 2 AC3 5 SER A 216 SITE 1 AC4 7 GLN A 36 GLN A 62 ALA A 63 VAL A 223 SITE 2 AC4 7 HIS A 250 LEU A 252 HOH A 346 CRYST1 95.616 95.616 81.616 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010459 0.006038 0.000000 0.00000 SCALE2 0.000000 0.012076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012252 0.00000