HEADER TRANSFERASE 28-AUG-08 3EC4 TITLE CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE FROM THE GNAT FAMILY TITLE 2 (YP_497011.1) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 AT 1.80 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACETYLTRANSFERASE FROM THE GNAT FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 GENE: YP_497011.1, SARO_1737; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_497011.1, PUTATIVE ACETYLTRANSFERASE FROM THE GNAT FAMILY, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE, ACETYLTRANSFERASE KEYWDS 4 (GNAT) FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3EC4 1 REMARK SEQADV REVDAT 5 24-JUL-19 3EC4 1 REMARK LINK REVDAT 4 25-OCT-17 3EC4 1 REMARK REVDAT 3 13-JUL-11 3EC4 1 VERSN REVDAT 2 24-FEB-09 3EC4 1 VERSN REVDAT 1 09-SEP-08 3EC4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE FROM THE JRNL TITL 2 GNAT FAMILY (YP_497011.1) FROM NOVOSPHINGOBIUM JRNL TITL 3 AROMATICIVORANS DSM 12444 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 493 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -1.22000 REMARK 3 B33 (A**2) : 1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3466 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2376 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4743 ; 1.563 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5754 ; 1.004 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 5.845 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;26.661 ;21.791 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;12.072 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;14.231 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3963 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 712 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 632 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2635 ; 0.222 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1645 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1833 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 345 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.109 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2351 ; 1.868 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 904 ; 0.712 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3614 ; 2.613 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1320 ; 3.988 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1124 ; 5.116 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 227 4 REMARK 3 1 B 4 B 227 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2784 ; 0.340 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2784 ; 1.130 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4190 20.3500 13.9900 REMARK 3 T TENSOR REMARK 3 T11: -0.1852 T22: -0.1342 REMARK 3 T33: -0.2006 T12: -0.0071 REMARK 3 T13: -0.0010 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.5939 L22: 0.2641 REMARK 3 L33: 0.8247 L12: -0.0180 REMARK 3 L13: -0.0656 L23: -0.0990 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.0647 S13: 0.0274 REMARK 3 S21: 0.0244 S22: -0.0139 S23: -0.0186 REMARK 3 S31: -0.0388 S32: 0.0783 S33: 0.0076 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 227 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8980 44.1500 21.1980 REMARK 3 T TENSOR REMARK 3 T11: -0.1556 T22: -0.1251 REMARK 3 T33: -0.1940 T12: -0.0107 REMARK 3 T13: 0.0142 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.4067 L22: 0.7513 REMARK 3 L33: 0.9256 L12: 0.0453 REMARK 3 L13: -0.0812 L23: -0.1108 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0060 S13: 0.0096 REMARK 3 S21: -0.0492 S22: 0.0052 S23: -0.0687 REMARK 3 S31: -0.1189 S32: 0.0311 S33: -0.0178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ACETATE FROM THE CRYSTALLIZATION BUFFER REMARK 3 IS MODELED INTO THE STRUCTURE. 4. ELECTRON DENSITY CORRESPONDING REMARK 3 TO GLY 121 ON THE B-SUBUNIT IS DISORDERED; THEREFORE, THIS RESIDUE REMARK 3 WAS NOT MODELED. 5. ELECTRON DENSITIES FOR GLY 0 MSE 1, SER 2, REMARK 3 AND GLU 3 AT REMARK 3 THE N-TERMINUS OF BOTH SUBUNITS IN THE ASYMMETRIC UNIT ARE REMARK 3 DISORDERED; REMARK 3 THERFORE THESE RESIDUES WERE NOT MODELED. 6.ATOM RECORD CONTAINS REMARK 3 RESIDUAL REMARK 3 B FACTORS ONLY. REMARK 4 REMARK 4 3EC4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.43 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38799 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 5.6280 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : 0.50500 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33.8% POLYETHYLENE GLYCOL 4000, 0.2M REMARK 280 SODIUM ACETATE, 0.1M TRIS PH 8.43, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.26150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.57450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.99200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.57450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.26150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.99200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLY B 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 LYS A 225 CE NZ REMARK 470 ASP B 4 CG OD1 OD2 REMARK 470 GLU B 21 CD OE1 OE2 REMARK 470 GLN B 55 CG CD OE1 NE2 REMARK 470 ARG B 129 CZ NH1 NH2 REMARK 470 THR B 227 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 215 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 215 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 55 -60.89 -91.19 REMARK 500 ALA A 88 79.55 -112.90 REMARK 500 THR A 118 -159.12 -121.91 REMARK 500 ARG A 149 -111.24 -134.08 REMARK 500 ALA B 25 -166.53 -103.11 REMARK 500 ALA B 88 76.54 -109.47 REMARK 500 THR B 118 -155.22 -118.71 REMARK 500 ARG B 149 -110.15 -136.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 230 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379619 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EC4 A 1 227 UNP Q2G7J6 Q2G7J6_NOVAD 1 227 DBREF 3EC4 B 1 227 UNP Q2G7J6 Q2G7J6_NOVAD 1 227 SEQADV 3EC4 GLY A 0 UNP Q2G7J6 EXPRESSION TAG SEQADV 3EC4 GLY B 0 UNP Q2G7J6 EXPRESSION TAG SEQRES 1 A 228 GLY MSE SER GLU ASP HIS PRO LEU ASP ARG PRO VAL TRP SEQRES 2 A 228 ASN SER LEU GLY GLY PRO GLN SER GLU LEU ASP VAL ALA SEQRES 3 A 228 SER GLY ASN LEU ARG ARG LEU ASP PRO ALA TYR GLY PRO SEQRES 4 A 228 PHE ALA ALA ALA ALA PRO GLY ALA GLU ALA GLY LEU ALA SEQRES 5 A 228 SER LEU LEU GLN GLY ASP ALA ASP GLU ILE TRP LEU VAL SEQRES 6 A 228 GLU PRO GLU PRO VAL ALA PRO PRO PRO GLY THR ARG VAL SEQRES 7 A 228 ILE ARG VAL ALA PRO LEU LEU GLN MSE ILE ALA ASP GLY SEQRES 8 A 228 PRO VAL PRO SER PHE ASP ASP PRO GLY ILE VAL ALA LEU SEQRES 9 A 228 GLY GLU THR ASP VAL PRO GLU MSE THR ALA LEU ALA LEU SEQRES 10 A 228 ALA THR GLU PRO GLY PRO TRP ALA SER GLY THR TRP ARG SEQRES 11 A 228 TYR GLY GLN PHE TYR GLY VAL ARG ILE ASP GLY ARG LEU SEQRES 12 A 228 ALA ALA MSE ALA GLY GLU ARG MSE ARG PRO ALA PRO ASN SEQRES 13 A 228 LEU ALA GLU VAL SER GLY VAL CYS THR TRP PRO GLU TYR SEQRES 14 A 228 ARG GLY ARG GLY LEU ALA ALA ARG LEU ILE ARG LYS VAL SEQRES 15 A 228 ILE ALA GLY MSE ALA ALA ARG GLY GLU VAL PRO TYR LEU SEQRES 16 A 228 HIS SER TYR ALA SER ASN ALA SER ALA ILE ARG LEU TYR SEQRES 17 A 228 GLU SER LEU GLY PHE ARG ALA ARG ARG ALA MSE THR ALA SEQRES 18 A 228 THR LEU LEU GLY LYS SER THR SEQRES 1 B 228 GLY MSE SER GLU ASP HIS PRO LEU ASP ARG PRO VAL TRP SEQRES 2 B 228 ASN SER LEU GLY GLY PRO GLN SER GLU LEU ASP VAL ALA SEQRES 3 B 228 SER GLY ASN LEU ARG ARG LEU ASP PRO ALA TYR GLY PRO SEQRES 4 B 228 PHE ALA ALA ALA ALA PRO GLY ALA GLU ALA GLY LEU ALA SEQRES 5 B 228 SER LEU LEU GLN GLY ASP ALA ASP GLU ILE TRP LEU VAL SEQRES 6 B 228 GLU PRO GLU PRO VAL ALA PRO PRO PRO GLY THR ARG VAL SEQRES 7 B 228 ILE ARG VAL ALA PRO LEU LEU GLN MSE ILE ALA ASP GLY SEQRES 8 B 228 PRO VAL PRO SER PHE ASP ASP PRO GLY ILE VAL ALA LEU SEQRES 9 B 228 GLY GLU THR ASP VAL PRO GLU MSE THR ALA LEU ALA LEU SEQRES 10 B 228 ALA THR GLU PRO GLY PRO TRP ALA SER GLY THR TRP ARG SEQRES 11 B 228 TYR GLY GLN PHE TYR GLY VAL ARG ILE ASP GLY ARG LEU SEQRES 12 B 228 ALA ALA MSE ALA GLY GLU ARG MSE ARG PRO ALA PRO ASN SEQRES 13 B 228 LEU ALA GLU VAL SER GLY VAL CYS THR TRP PRO GLU TYR SEQRES 14 B 228 ARG GLY ARG GLY LEU ALA ALA ARG LEU ILE ARG LYS VAL SEQRES 15 B 228 ILE ALA GLY MSE ALA ALA ARG GLY GLU VAL PRO TYR LEU SEQRES 16 B 228 HIS SER TYR ALA SER ASN ALA SER ALA ILE ARG LEU TYR SEQRES 17 B 228 GLU SER LEU GLY PHE ARG ALA ARG ARG ALA MSE THR ALA SEQRES 18 B 228 THR LEU LEU GLY LYS SER THR MODRES 3EC4 MSE A 86 MET SELENOMETHIONINE MODRES 3EC4 MSE A 111 MET SELENOMETHIONINE MODRES 3EC4 MSE A 145 MET SELENOMETHIONINE MODRES 3EC4 MSE A 150 MET SELENOMETHIONINE MODRES 3EC4 MSE A 185 MET SELENOMETHIONINE MODRES 3EC4 MSE A 218 MET SELENOMETHIONINE MODRES 3EC4 MSE B 86 MET SELENOMETHIONINE MODRES 3EC4 MSE B 111 MET SELENOMETHIONINE MODRES 3EC4 MSE B 145 MET SELENOMETHIONINE MODRES 3EC4 MSE B 150 MET SELENOMETHIONINE MODRES 3EC4 MSE B 185 MET SELENOMETHIONINE MODRES 3EC4 MSE B 218 MET SELENOMETHIONINE HET MSE A 86 8 HET MSE A 111 8 HET MSE A 145 8 HET MSE A 150 8 HET MSE A 185 8 HET MSE A 218 8 HET MSE B 86 8 HET MSE B 111 8 HET MSE B 145 8 HET MSE B 150 8 HET MSE B 185 8 HET MSE B 218 8 HET ACT A 228 4 HET ACT A 229 4 HET ACT B 228 4 HET ACT B 229 4 HET ACT B 230 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 ACT 5(C2 H3 O2 1-) FORMUL 8 HOH *493(H2 O) HELIX 1 1 HIS A 5 ASP A 8 5 4 HELIX 2 2 ARG A 9 GLY A 17 1 9 HELIX 3 3 GLN A 19 ASP A 23 5 5 HELIX 4 4 ALA A 46 LEU A 54 5 9 HELIX 5 5 GLY A 104 THR A 106 5 3 HELIX 6 6 ASP A 107 THR A 118 1 12 HELIX 7 7 GLY A 126 TYR A 130 5 5 HELIX 8 8 PRO A 166 ARG A 169 5 4 HELIX 9 9 GLY A 172 ARG A 188 1 17 HELIX 10 10 ASN A 200 LEU A 210 1 11 HELIX 11 11 HIS B 5 ASP B 8 5 4 HELIX 12 12 ARG B 9 GLY B 17 1 9 HELIX 13 13 GLN B 19 ASP B 23 5 5 HELIX 14 14 ALA B 46 LEU B 54 5 9 HELIX 15 15 GLY B 104 THR B 106 5 3 HELIX 16 16 ASP B 107 THR B 118 1 12 HELIX 17 17 GLY B 126 GLY B 131 5 6 HELIX 18 18 PRO B 166 ARG B 169 5 4 HELIX 19 19 GLY B 172 ARG B 188 1 17 HELIX 20 20 ASN B 200 LEU B 210 1 11 SHEET 1 A 2 LEU A 29 ARG A 31 0 SHEET 2 A 2 ALA A 40 ALA A 42 -1 O ALA A 41 N ARG A 30 SHEET 1 B 8 GLU A 60 GLU A 65 0 SHEET 2 B 8 ARG A 213 LYS A 225 -1 O THR A 219 N GLU A 65 SHEET 3 B 8 THR A 75 ILE A 87 -1 N ILE A 78 O LEU A 222 SHEET 4 B 8 VAL A 191 TYR A 197 -1 O LEU A 194 N MSE A 86 SHEET 5 B 8 LEU A 156 THR A 164 1 N VAL A 159 O TYR A 193 SHEET 6 B 8 ARG A 141 GLU A 148 -1 N GLY A 147 O SER A 160 SHEET 7 B 8 PHE A 133 ILE A 138 -1 N TYR A 134 O ALA A 146 SHEET 8 B 8 VAL A 101 ALA A 102 -1 N VAL A 101 O GLY A 135 SHEET 1 C 2 LEU B 29 ARG B 31 0 SHEET 2 C 2 ALA B 40 ALA B 42 -1 O ALA B 41 N ARG B 30 SHEET 1 D 8 GLU B 60 GLU B 65 0 SHEET 2 D 8 ARG B 213 LYS B 225 -1 O THR B 219 N GLU B 65 SHEET 3 D 8 THR B 75 ILE B 87 -1 N GLN B 85 O ARG B 216 SHEET 4 D 8 VAL B 191 TYR B 197 -1 O SER B 196 N LEU B 84 SHEET 5 D 8 LEU B 156 THR B 164 1 N VAL B 159 O TYR B 193 SHEET 6 D 8 ARG B 141 GLU B 148 -1 N GLY B 147 O SER B 160 SHEET 7 D 8 PHE B 133 ILE B 138 -1 N TYR B 134 O ALA B 146 SHEET 8 D 8 ILE B 100 ALA B 102 -1 N VAL B 101 O GLY B 135 LINK C GLN A 85 N MSE A 86 1555 1555 1.34 LINK C MSE A 86 N ILE A 87 1555 1555 1.33 LINK C GLU A 110 N MSE A 111 1555 1555 1.34 LINK C MSE A 111 N THR A 112 1555 1555 1.32 LINK C ALA A 144 N MSE A 145 1555 1555 1.32 LINK C MSE A 145 N ALA A 146 1555 1555 1.33 LINK C ARG A 149 N MSE A 150 1555 1555 1.34 LINK C MSE A 150 N ARG A 151 1555 1555 1.32 LINK C GLY A 184 N MSE A 185 1555 1555 1.34 LINK C MSE A 185 N ALA A 186 1555 1555 1.32 LINK C ALA A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N THR A 219 1555 1555 1.33 LINK C GLN B 85 N MSE B 86 1555 1555 1.34 LINK C MSE B 86 N ILE B 87 1555 1555 1.33 LINK C GLU B 110 N MSE B 111 1555 1555 1.34 LINK C MSE B 111 N THR B 112 1555 1555 1.33 LINK C ALA B 144 N MSE B 145 1555 1555 1.35 LINK C MSE B 145 N ALA B 146 1555 1555 1.33 LINK C ARG B 149 N MSE B 150 1555 1555 1.33 LINK C MSE B 150 N ARG B 151 1555 1555 1.33 LINK C GLY B 184 N MSE B 185 1555 1555 1.32 LINK C MSE B 185 N ALA B 186 1555 1555 1.33 LINK C ALA B 217 N MSE B 218 1555 1555 1.32 LINK C MSE B 218 N THR B 219 1555 1555 1.32 SITE 1 AC1 4 ARG A 76 ILE A 78 HOH A 403 GLU B 110 SITE 1 AC2 6 PRO B 34 ALA B 35 ALA B 124 SER B 125 SITE 2 AC2 6 HOH B 442 HOH B 443 SITE 1 AC3 2 TYR A 134 LYS A 180 SITE 1 AC4 5 PRO A 34 HOH A 287 ALA B 175 SER B 209 SITE 2 AC4 5 LEU B 210 SITE 1 AC5 3 ARG B 76 ILE B 78 HOH B 305 CRYST1 44.523 63.984 143.149 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006986 0.00000