HEADER VIRAL PROTEIN 04-SEP-08 3EE7 TITLE CRYSTAL STRUCTURE OF SARS-COV NSP9 G104E COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PP1A, ORF1A POLYPROTEIN, NON-STRUCTURAL PROTEIN 1, NSP1, COMPND 5 LEADER PROTEIN, NON-STRUCTURAL PROTEIN 2, NSP2, P65 HOMOLOG, NON- COMPND 6 STRUCTURAL PROTEIN 3, NSP3, PAPAIN-LIKE PROTEINASE, PL-PRO, PL2-PRO, COMPND 7 NON-STRUCTURAL PROTEIN 4, NSP4, 3C-LIKE PROTEINASE, 3CL-PRO, 3CLP, COMPND 8 NSP5, NON-STRUCTURAL PROTEIN 6, NSP6, NON-STRUCTURAL PROTEIN 7, NSP7, COMPND 9 NON-STRUCTURAL PROTEIN 8, NSP8, NON-STRUCTURAL PROTEIN 9, NSP9, NON- COMPND 10 STRUCTURAL PROTEIN 10, NSP10, GROWTH FACTOR-LIKE PEPTIDE, GFL, NON- COMPND 11 STRUCTURAL PROTEIN 11, NSP11; COMPND 12 EC: 3.4.22.-; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS; SOURCE 3 ORGANISM_COMMON: SARS-COV; SOURCE 4 ORGANISM_TAXID: 227859; SOURCE 5 STRAIN: URBANI; SOURCE 6 GENE: 1A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET23D KEYWDS GXXXG, DIMERIZATION, SARS-COV, HELIX-HELIX, HYDROLASE, MEMBRANE, KEYWDS 2 METAL-BINDING, PROTEASE, RNA-BINDING, THIOL PROTEASE, TRANSMEMBRANE, KEYWDS 3 ZINC-FINGER, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.J.MIKNIS,E.F.DONALDSON,T.C.UMLAND,R.RIMMER,R.S.BARIC,L.W.SCHULTZ REVDAT 5 30-AUG-23 3EE7 1 REMARK REVDAT 4 20-OCT-21 3EE7 1 REMARK SEQADV REVDAT 3 25-OCT-17 3EE7 1 REMARK REVDAT 2 13-JUL-11 3EE7 1 VERSN REVDAT 1 24-MAR-09 3EE7 0 JRNL AUTH Z.J.MIKNIS,E.F.DONALDSON,T.C.UMLAND,R.A.RIMMER,R.S.BARIC, JRNL AUTH 2 L.W.SCHULTZ JRNL TITL SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS NSP9 JRNL TITL 2 DIMERIZATION IS ESSENTIAL FOR EFFICIENT VIRAL GROWTH JRNL REF J.VIROL. V. 83 3007 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19153232 JRNL DOI 10.1128/JVI.01505-08 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1773985.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2390 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2541 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 275 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 64.24 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GOL_XPLOR.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : GOL_XPLOR.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3EE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CASPR REMARK 200 STARTING MODEL: PDB ENTRY 1QZ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M AMMONIUM SULFATE, 0.1 M CITRATE REMARK 280 -PHOSPHATE BUFFER PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.07233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.14467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 36 REMARK 465 GLY A 37 REMARK 465 ASP A 60 REMARK 465 GLY A 61 REMARK 465 LEU A 114 REMARK 465 GLU A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 ASN B 1 REMARK 465 ASN B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 ASN C 1 REMARK 465 ASN C 2 REMARK 465 GLU C 3 REMARK 465 LEU C 4 REMARK 465 GLY C 37 REMARK 465 GLY C 38 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 HIS C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 ASN D 1 REMARK 465 ASN D 2 REMARK 465 GLU D 3 REMARK 465 GLY D 37 REMARK 465 HIS D 117 REMARK 465 HIS D 118 REMARK 465 HIS D 119 REMARK 465 HIS D 120 REMARK 465 HIS D 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 7 141.89 -172.82 REMARK 500 THR A 24 -59.26 -135.27 REMARK 500 ASN A 27 22.25 -144.47 REMARK 500 PRO A 57 101.95 -57.12 REMARK 500 LYS A 58 156.75 -35.04 REMARK 500 PRO B 6 65.94 -57.24 REMARK 500 VAL B 7 31.40 -97.57 REMARK 500 ASP B 25 -146.89 173.74 REMARK 500 ASP B 26 86.45 -54.00 REMARK 500 ASN B 34 78.20 -115.72 REMARK 500 LYS B 36 -70.58 76.77 REMARK 500 SER B 59 -70.20 -57.13 REMARK 500 ASP B 60 -4.29 -56.08 REMARK 500 THR B 62 68.58 -111.27 REMARK 500 HIS B 116 99.03 -54.09 REMARK 500 HIS B 117 143.99 -176.44 REMARK 500 HIS B 118 105.10 -31.53 REMARK 500 PRO C 6 41.34 -83.12 REMARK 500 MET C 12 147.88 -173.85 REMARK 500 THR C 24 -13.35 -145.70 REMARK 500 ASP C 25 -158.99 -146.14 REMARK 500 ALA C 108 119.72 -162.22 REMARK 500 CYS D 23 95.39 -58.24 REMARK 500 THR D 24 -83.10 -102.56 REMARK 500 ASN D 27 25.79 -145.71 REMARK 500 VAL D 110 -8.28 -51.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZ8 RELATED DB: PDB REMARK 900 WILD-TYPE NSP9 REMARK 900 RELATED ID: 1UW7 RELATED DB: PDB REMARK 900 WILD-TYPE NSP9 REMARK 900 RELATED ID: 2J97 RELATED DB: PDB REMARK 900 WILD-TYPE HCOV-229E NSP9 REMARK 900 RELATED ID: 2J98 RELATED DB: PDB REMARK 900 HCOV-229E NSP9 C69A MUTANT DBREF 3EE7 A 1 113 UNP P0C6U8 R1A_CVHSA 4118 4230 DBREF 3EE7 B 1 113 UNP P0C6U8 R1A_CVHSA 4118 4230 DBREF 3EE7 C 1 113 UNP P0C6U8 R1A_CVHSA 4118 4230 DBREF 3EE7 D 1 113 UNP P0C6U8 R1A_CVHSA 4118 4230 SEQADV 3EE7 GLU A 104 UNP P0C6U8 GLY 4221 ENGINEERED MUTATION SEQADV 3EE7 LEU A 114 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 GLU A 115 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS A 116 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS A 117 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS A 118 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS A 119 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS A 120 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS A 121 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 GLU B 104 UNP P0C6U8 GLY 4221 ENGINEERED MUTATION SEQADV 3EE7 LEU B 114 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 GLU B 115 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS B 116 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS B 117 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS B 118 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS B 119 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS B 120 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS B 121 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 GLU C 104 UNP P0C6U8 GLY 4221 ENGINEERED MUTATION SEQADV 3EE7 LEU C 114 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 GLU C 115 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS C 116 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS C 117 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS C 118 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS C 119 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS C 120 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS C 121 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 GLU D 104 UNP P0C6U8 GLY 4221 ENGINEERED MUTATION SEQADV 3EE7 LEU D 114 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 GLU D 115 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS D 116 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS D 117 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS D 118 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS D 119 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS D 120 UNP P0C6U8 EXPRESSION TAG SEQADV 3EE7 HIS D 121 UNP P0C6U8 EXPRESSION TAG SEQRES 1 A 121 ASN ASN GLU LEU SER PRO VAL ALA LEU ARG GLN MET SER SEQRES 2 A 121 CYS ALA ALA GLY THR THR GLN THR ALA CYS THR ASP ASP SEQRES 3 A 121 ASN ALA LEU ALA TYR TYR ASN ASN SER LYS GLY GLY ARG SEQRES 4 A 121 PHE VAL LEU ALA LEU LEU SER ASP HIS GLN ASP LEU LYS SEQRES 5 A 121 TRP ALA ARG PHE PRO LYS SER ASP GLY THR GLY THR ILE SEQRES 6 A 121 TYR THR GLU LEU GLU PRO PRO CYS ARG PHE VAL THR ASP SEQRES 7 A 121 THR PRO LYS GLY PRO LYS VAL LYS TYR LEU TYR PHE ILE SEQRES 8 A 121 LYS GLY LEU ASN ASN LEU ASN ARG GLY MET VAL LEU GLU SEQRES 9 A 121 SER LEU ALA ALA THR VAL ARG LEU GLN LEU GLU HIS HIS SEQRES 10 A 121 HIS HIS HIS HIS SEQRES 1 B 121 ASN ASN GLU LEU SER PRO VAL ALA LEU ARG GLN MET SER SEQRES 2 B 121 CYS ALA ALA GLY THR THR GLN THR ALA CYS THR ASP ASP SEQRES 3 B 121 ASN ALA LEU ALA TYR TYR ASN ASN SER LYS GLY GLY ARG SEQRES 4 B 121 PHE VAL LEU ALA LEU LEU SER ASP HIS GLN ASP LEU LYS SEQRES 5 B 121 TRP ALA ARG PHE PRO LYS SER ASP GLY THR GLY THR ILE SEQRES 6 B 121 TYR THR GLU LEU GLU PRO PRO CYS ARG PHE VAL THR ASP SEQRES 7 B 121 THR PRO LYS GLY PRO LYS VAL LYS TYR LEU TYR PHE ILE SEQRES 8 B 121 LYS GLY LEU ASN ASN LEU ASN ARG GLY MET VAL LEU GLU SEQRES 9 B 121 SER LEU ALA ALA THR VAL ARG LEU GLN LEU GLU HIS HIS SEQRES 10 B 121 HIS HIS HIS HIS SEQRES 1 C 121 ASN ASN GLU LEU SER PRO VAL ALA LEU ARG GLN MET SER SEQRES 2 C 121 CYS ALA ALA GLY THR THR GLN THR ALA CYS THR ASP ASP SEQRES 3 C 121 ASN ALA LEU ALA TYR TYR ASN ASN SER LYS GLY GLY ARG SEQRES 4 C 121 PHE VAL LEU ALA LEU LEU SER ASP HIS GLN ASP LEU LYS SEQRES 5 C 121 TRP ALA ARG PHE PRO LYS SER ASP GLY THR GLY THR ILE SEQRES 6 C 121 TYR THR GLU LEU GLU PRO PRO CYS ARG PHE VAL THR ASP SEQRES 7 C 121 THR PRO LYS GLY PRO LYS VAL LYS TYR LEU TYR PHE ILE SEQRES 8 C 121 LYS GLY LEU ASN ASN LEU ASN ARG GLY MET VAL LEU GLU SEQRES 9 C 121 SER LEU ALA ALA THR VAL ARG LEU GLN LEU GLU HIS HIS SEQRES 10 C 121 HIS HIS HIS HIS SEQRES 1 D 121 ASN ASN GLU LEU SER PRO VAL ALA LEU ARG GLN MET SER SEQRES 2 D 121 CYS ALA ALA GLY THR THR GLN THR ALA CYS THR ASP ASP SEQRES 3 D 121 ASN ALA LEU ALA TYR TYR ASN ASN SER LYS GLY GLY ARG SEQRES 4 D 121 PHE VAL LEU ALA LEU LEU SER ASP HIS GLN ASP LEU LYS SEQRES 5 D 121 TRP ALA ARG PHE PRO LYS SER ASP GLY THR GLY THR ILE SEQRES 6 D 121 TYR THR GLU LEU GLU PRO PRO CYS ARG PHE VAL THR ASP SEQRES 7 D 121 THR PRO LYS GLY PRO LYS VAL LYS TYR LEU TYR PHE ILE SEQRES 8 D 121 LYS GLY LEU ASN ASN LEU ASN ARG GLY MET VAL LEU GLU SEQRES 9 D 121 SER LEU ALA ALA THR VAL ARG LEU GLN LEU GLU HIS HIS SEQRES 10 D 121 HIS HIS HIS HIS HET PO4 A 122 5 HET PO4 A 123 5 HET PO4 A 124 5 HET GOL A 125 6 HET GOL A 126 6 HET GOL A 127 6 HET GOL A 128 6 HET GOL A 129 6 HET PO4 B 122 5 HET GOL B 123 6 HET GOL B 124 6 HET PO4 C 122 5 HET GOL C 123 6 HET GOL C 124 6 HET GOL C 125 6 HET GOL C 126 6 HET PO4 D 122 5 HET PO4 D 123 5 HET PO4 D 124 5 HET GOL D 125 6 HET GOL D 126 6 HET GOL D 127 6 HET GOL D 128 6 HET GOL D 129 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 PO4 8(O4 P 3-) FORMUL 8 GOL 16(C3 H8 O3) FORMUL 29 HOH *116(H2 O) HELIX 1 1 ASN A 95 ALA A 108 1 14 HELIX 2 2 ASN B 95 ALA B 108 1 14 HELIX 3 3 ASN C 95 ALA C 108 1 14 HELIX 4 4 ASN D 95 ALA D 108 1 14 SHEET 1 A14 CYS A 73 THR A 77 0 SHEET 2 A14 LYS A 84 PHE A 90 -1 O LYS A 84 N THR A 77 SHEET 3 A14 PHE A 40 SER A 46 -1 N LEU A 44 O TYR A 89 SHEET 4 A14 ASP A 26 ASN A 33 -1 N ASN A 33 O PHE A 40 SHEET 5 A14 ARG A 10 GLY A 17 -1 N ARG A 10 O TYR A 32 SHEET 6 A14 TRP A 53 PHE A 56 -1 O ARG A 55 N ALA A 15 SHEET 7 A14 GLY A 63 GLU A 68 -1 O ILE A 65 N PHE A 56 SHEET 8 A14 GLY C 63 GLU C 68 -1 O THR C 64 N TYR A 66 SHEET 9 A14 TRP C 53 PRO C 57 -1 N PHE C 56 O ILE C 65 SHEET 10 A14 ARG C 10 GLY C 17 -1 N ALA C 15 O ARG C 55 SHEET 11 A14 ALA C 28 ASN C 33 -1 O ALA C 30 N MET C 12 SHEET 12 A14 PHE C 40 SER C 46 -1 O LEU C 42 N TYR C 31 SHEET 13 A14 LYS C 84 PHE C 90 -1 O TYR C 89 N LEU C 44 SHEET 14 A14 CYS C 73 THR C 77 -1 N PHE C 75 O LYS C 86 SHEET 1 B 7 THR B 64 GLU B 68 0 SHEET 2 B 7 TRP B 53 PRO B 57 -1 N PHE B 56 O ILE B 65 SHEET 3 B 7 ARG B 10 GLY B 17 -1 N ALA B 15 O ARG B 55 SHEET 4 B 7 ASP B 26 ASN B 33 -1 O TYR B 32 N ARG B 10 SHEET 5 B 7 PHE B 40 SER B 46 -1 O LEU B 42 N TYR B 31 SHEET 6 B 7 LYS B 84 PHE B 90 -1 O TYR B 89 N LEU B 44 SHEET 7 B 7 CYS B 73 THR B 77 -1 N PHE B 75 O LYS B 86 SHEET 1 C 7 THR D 64 GLU D 68 0 SHEET 2 C 7 TRP D 53 PRO D 57 -1 N PHE D 56 O ILE D 65 SHEET 3 C 7 ARG D 10 GLY D 17 -1 N ALA D 15 O ARG D 55 SHEET 4 C 7 ALA D 28 ASN D 33 -1 O TYR D 32 N ARG D 10 SHEET 5 C 7 PHE D 40 SER D 46 -1 O LEU D 42 N TYR D 31 SHEET 6 C 7 LYS D 84 PHE D 90 -1 O TYR D 89 N LEU D 44 SHEET 7 C 7 CYS D 73 THR D 77 -1 N PHE D 75 O LYS D 86 SITE 1 AC1 4 ARG A 10 TYR A 32 ASN A 34 ARG A 39 SITE 1 AC2 6 ASN A 96 GOL A 128 GOL A 129 ASN B 95 SITE 2 AC2 6 ASN B 96 LEU B 97 SITE 1 AC3 1 ARG A 39 SITE 1 AC4 3 ASN A 95 GLN A 113 GLU B 115 SITE 1 AC5 4 ASP A 47 HIS A 48 GLN A 49 ASP A 50 SITE 1 AC6 3 ARG A 39 VAL A 41 THR A 67 SITE 1 AC7 5 ASN A 95 ASN A 96 PO4 A 123 HOH A 156 SITE 2 AC7 5 ASN B 96 SITE 1 AC8 2 PO4 A 123 ASN B 95 SITE 1 AC9 5 ARG A 10 HIS B 48 GLN B 49 ASP B 50 SITE 2 AC9 5 HOH B 139 SITE 1 BC1 3 ASP B 47 LYS B 84 LYS B 86 SITE 1 BC2 2 THR B 19 GLN B 20 SITE 1 BC3 3 PRO C 6 ASN C 34 ARG D 111 SITE 1 BC4 4 ASN C 27 SER C 46 ASP C 47 LYS C 86 SITE 1 BC5 4 ASP C 50 LYS C 52 ALA C 108 THR C 109 SITE 1 BC6 4 ARG C 10 ARG C 111 LEU C 112 HOH C 160 SITE 1 BC7 3 ARG C 55 PRO C 57 HOH C 156 SITE 1 BC8 7 HIS C 48 GLN C 49 ASP C 50 ARG D 10 SITE 2 BC8 7 LYS D 81 HOH D 154 HOH D 171 SITE 1 BC9 6 ARG D 10 TYR D 32 ASN D 34 ARG D 39 SITE 2 BC9 6 HOH D 158 HOH D 160 SITE 1 CC1 5 ASN C 95 ASN C 96 LEU C 97 ASN D 96 SITE 2 CC1 5 GOL D 128 SITE 1 CC2 5 ARG D 39 LYS D 58 SER D 59 HOH D 161 SITE 2 CC2 5 HOH D 172 SITE 1 CC3 3 MET D 12 SER D 13 ARG D 39 SITE 1 CC4 4 HIS D 48 GLN D 49 ASP D 50 HOH D 163 SITE 1 CC5 5 ASN C 96 GLU C 115 ASN D 95 ASN D 96 SITE 2 CC5 5 PO4 D 124 SITE 1 CC6 2 PHE D 90 ARG D 99 CRYST1 91.836 91.836 84.217 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010889 0.006287 0.000000 0.00000 SCALE2 0.000000 0.012574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011874 0.00000