HEADER HYDROLASE 04-SEP-08 3EEF TITLE CRYSTAL STRUCTURE OF N-CARBAMOYLSARCOSINE AMIDASE FROM THERMOPLASMA TITLE 2 ACIDOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-CARBAMOYLSARCOSINE AMIDASE RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.1.59; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: TA0454; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS N-CARBAMOYLSARCOSINE AMIDASE, PROTEIN, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-B.LUO,H.ZHENG,M.CHRUSZCZ,M.D.ZIMMERMAN,T.SKARINA,O.EGOROVA, AUTHOR 2 A.SAVCHENKO,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (MCSG) REVDAT 6 13-NOV-24 3EEF 1 REMARK REVDAT 5 13-APR-22 3EEF 1 AUTHOR JRNL REMARK LINK REVDAT 4 13-JUL-11 3EEF 1 VERSN REVDAT 3 16-MAR-10 3EEF 1 JRNL REVDAT 2 24-FEB-09 3EEF 1 VERSN REVDAT 1 16-SEP-08 3EEF 0 JRNL AUTH H.B.LUO,H.ZHENG,M.D.ZIMMERMAN,M.CHRUSZCZ,T.SKARINA, JRNL AUTH 2 O.EGOROVA,A.SAVCHENKO,A.M.EDWARDS,W.MINOR JRNL TITL CRYSTAL STRUCTURE AND MOLECULAR MODELING STUDY OF JRNL TITL 2 N-CARBAMOYLSARCOSINE AMIDASE TA0454 FROM THERMOPLASMA JRNL TITL 3 ACIDOPHILUM. JRNL REF J.STRUCT.BIOL. V. 169 304 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 19932181 JRNL DOI 10.1016/J.JSB.2009.11.008 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0017 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 16369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 829 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1135 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 59.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.348 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2699 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1746 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3670 ; 1.315 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4239 ; 0.945 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 6.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;35.800 ;23.277 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;14.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.587 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3060 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 564 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1718 ; 1.643 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 700 ; 0.439 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2759 ; 2.981 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 981 ; 5.718 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 911 ; 7.854 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 10 3 REMARK 3 1 B 1 B 10 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 58 ; 0.030 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 64 ; 0.040 ; 5.000 REMARK 3 TIGHT THERMAL 1 B (A**2): 58 ; 0.140 ; 0.500 REMARK 3 LOOSE THERMAL 1 B (A**2): 64 ; 0.170 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 30 A 80 3 REMARK 3 1 B 30 B 80 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 298 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 2 A (A): 340 ; 0.040 ; 5.000 REMARK 3 TIGHT THERMAL 2 B (A**2): 298 ; 0.140 ; 0.500 REMARK 3 LOOSE THERMAL 2 B (A**2): 340 ; 0.140 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 82 A 86 6 REMARK 3 1 B 82 B 86 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 3 A (A): 56 ; 0.320 ; 5.000 REMARK 3 LOOSE THERMAL 3 A (A**2): 56 ; 2.450 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 87 A 115 3 REMARK 3 1 B 87 B 115 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 A (A): 171 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 4 A (A): 198 ; 0.030 ; 5.000 REMARK 3 TIGHT THERMAL 4 B (A**2): 171 ; 0.180 ; 0.500 REMARK 3 LOOSE THERMAL 4 B (A**2): 198 ; 0.190 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 142 A 142 4 REMARK 3 1 B 142 B 142 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 5 A (A): 15 ; 0.130 ; 0.500 REMARK 3 MEDIUM THERMAL 5 A (A**2): 15 ; 0.470 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 144 A 173 3 REMARK 3 1 B 144 B 173 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 6 A (A): 177 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 6 A (A): 194 ; 0.040 ; 5.000 REMARK 3 TIGHT THERMAL 6 B (A**2): 177 ; 0.120 ; 0.500 REMARK 3 LOOSE THERMAL 6 B (A**2): 194 ; 0.120 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7070 23.1100 21.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.0243 T22: 0.0787 REMARK 3 T33: 0.0896 T12: -0.0310 REMARK 3 T13: 0.0344 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.7825 L22: 0.7267 REMARK 3 L33: 0.7124 L12: -0.1541 REMARK 3 L13: -0.2277 L23: -0.0743 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.0842 S13: -0.0862 REMARK 3 S21: 0.0298 S22: -0.0738 S23: -0.0418 REMARK 3 S31: 0.0943 S32: 0.0076 S33: 0.0626 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4480 33.9940 45.6040 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.0897 REMARK 3 T33: 0.1081 T12: -0.0039 REMARK 3 T13: -0.0615 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.1649 L22: 0.9829 REMARK 3 L33: 0.5985 L12: 0.2419 REMARK 3 L13: 0.1397 L23: 0.3079 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: -0.1489 S13: -0.0759 REMARK 3 S21: 0.2694 S22: 0.0371 S23: -0.2379 REMARK 3 S31: 0.0285 S32: 0.0145 S33: 0.0356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3EEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 65.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : 0.44700 REMARK 200 FOR SHELL : 7.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NH4 SULFATTE 2M, ISO-PROPANOLE 5%, REMARK 280 VAPOR DIFFUSION - SITTING DROP, TEMPERATURE 273K, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.81667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.90833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.81667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.90833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -41.98500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 72.72015 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 174 REMARK 465 LEU A 175 REMARK 465 GLN A 176 REMARK 465 GLU A 177 REMARK 465 ASP A 178 REMARK 465 GLN A 179 REMARK 465 ILE A 180 REMARK 465 GLU A 181 REMARK 465 THR A 182 REMARK 465 MSE B 174 REMARK 465 LEU B 175 REMARK 465 GLN B 176 REMARK 465 GLU B 177 REMARK 465 ASP B 178 REMARK 465 GLN B 179 REMARK 465 ILE B 180 REMARK 465 GLU B 181 REMARK 465 THR B 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 71 CG OD1 OD2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ILE A 149 CG1 CG2 CD1 REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 19 CG CD1 CD2 REMARK 470 THR B 21 OG1 CG2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 71 CG OD1 OD2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 149 CG1 CG2 CD1 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 ARG B 159 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 122 -92.66 -116.49 REMARK 500 ARG A 148 -67.57 -123.20 REMARK 500 ILE B 15 -68.30 -108.29 REMARK 500 ILE B 122 -96.60 -126.81 REMARK 500 ARG B 148 -60.30 -122.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 183 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD2 REMARK 620 2 HIS A 52 NE2 88.1 REMARK 620 3 GLU A 58 OE1 153.6 97.6 REMARK 620 4 HIS A 65 NE2 112.8 99.4 91.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 183 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 50 OD2 REMARK 620 2 HIS B 52 NE2 96.6 REMARK 620 3 GLU B 58 OE1 143.8 93.7 REMARK 620 4 HIS B 65 NE2 121.7 102.5 89.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 183 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7585 RELATED DB: TARGETDB DBREF 3EEF A 1 182 UNP Q9HKY9 Q9HKY9_THEAC 1 182 DBREF 3EEF B 1 182 UNP Q9HKY9 Q9HKY9_THEAC 1 182 SEQRES 1 A 182 MSE LYS PRO ALA LEU VAL VAL VAL ASP MSE VAL ASN GLU SEQRES 2 A 182 PHE ILE HIS GLY ARG LEU ALA THR PRO GLU ALA MSE LYS SEQRES 3 A 182 THR VAL GLY PRO ALA ARG LYS VAL ILE GLU THR PHE ARG SEQRES 4 A 182 ARG SER GLY LEU PRO VAL VAL TYR VAL ASN ASP SER HIS SEQRES 5 A 182 TYR PRO ASP ASP PRO GLU ILE ARG ILE TRP GLY ARG HIS SEQRES 6 A 182 SER MSE LYS GLY ASP ASP GLY SER GLU VAL ILE ASP GLU SEQRES 7 A 182 ILE ARG PRO SER ALA GLY ASP TYR VAL LEU GLU LYS HIS SEQRES 8 A 182 ALA TYR SER GLY PHE TYR GLY THR ASN LEU ASP MSE ILE SEQRES 9 A 182 LEU ARG ALA ASN GLY ILE ASP THR VAL VAL LEU ILE GLY SEQRES 10 A 182 LEU ASP ALA ASP ILE CYS VAL ARG HIS THR ALA ALA ASP SEQRES 11 A 182 ALA LEU TYR ARG ASN TYR ARG ILE ILE VAL VAL GLU ASP SEQRES 12 A 182 ALA VAL ALA ALA ARG ILE ASP PRO ASN TRP LYS ASP TYR SEQRES 13 A 182 PHE THR ARG VAL TYR GLY ALA THR VAL LYS ARG SER ASP SEQRES 14 A 182 GLU ILE GLU GLY MSE LEU GLN GLU ASP GLN ILE GLU THR SEQRES 1 B 182 MSE LYS PRO ALA LEU VAL VAL VAL ASP MSE VAL ASN GLU SEQRES 2 B 182 PHE ILE HIS GLY ARG LEU ALA THR PRO GLU ALA MSE LYS SEQRES 3 B 182 THR VAL GLY PRO ALA ARG LYS VAL ILE GLU THR PHE ARG SEQRES 4 B 182 ARG SER GLY LEU PRO VAL VAL TYR VAL ASN ASP SER HIS SEQRES 5 B 182 TYR PRO ASP ASP PRO GLU ILE ARG ILE TRP GLY ARG HIS SEQRES 6 B 182 SER MSE LYS GLY ASP ASP GLY SER GLU VAL ILE ASP GLU SEQRES 7 B 182 ILE ARG PRO SER ALA GLY ASP TYR VAL LEU GLU LYS HIS SEQRES 8 B 182 ALA TYR SER GLY PHE TYR GLY THR ASN LEU ASP MSE ILE SEQRES 9 B 182 LEU ARG ALA ASN GLY ILE ASP THR VAL VAL LEU ILE GLY SEQRES 10 B 182 LEU ASP ALA ASP ILE CYS VAL ARG HIS THR ALA ALA ASP SEQRES 11 B 182 ALA LEU TYR ARG ASN TYR ARG ILE ILE VAL VAL GLU ASP SEQRES 12 B 182 ALA VAL ALA ALA ARG ILE ASP PRO ASN TRP LYS ASP TYR SEQRES 13 B 182 PHE THR ARG VAL TYR GLY ALA THR VAL LYS ARG SER ASP SEQRES 14 B 182 GLU ILE GLU GLY MSE LEU GLN GLU ASP GLN ILE GLU THR MODRES 3EEF MSE A 1 MET SELENOMETHIONINE MODRES 3EEF MSE A 10 MET SELENOMETHIONINE MODRES 3EEF MSE A 25 MET SELENOMETHIONINE MODRES 3EEF MSE A 67 MET SELENOMETHIONINE MODRES 3EEF MSE A 103 MET SELENOMETHIONINE MODRES 3EEF MSE B 1 MET SELENOMETHIONINE MODRES 3EEF MSE B 10 MET SELENOMETHIONINE MODRES 3EEF MSE B 25 MET SELENOMETHIONINE MODRES 3EEF MSE B 67 MET SELENOMETHIONINE MODRES 3EEF MSE B 103 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 10 8 HET MSE A 25 8 HET MSE A 67 8 HET MSE A 103 8 HET MSE B 1 8 HET MSE B 10 8 HET MSE B 25 8 HET MSE B 67 8 HET MSE B 103 8 HET ZN A 183 1 HET ZN B 183 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *52(H2 O) HELIX 1 1 VAL A 11 HIS A 16 1 6 HELIX 2 2 THR A 21 SER A 41 1 21 HELIX 3 3 GLU A 58 GLY A 63 1 6 HELIX 4 4 ASP A 70 GLU A 74 5 5 HELIX 5 5 ILE A 76 ARG A 80 5 5 HELIX 6 6 ASN A 100 ASN A 108 1 9 HELIX 7 7 ILE A 122 ARG A 134 1 13 HELIX 8 8 ASN A 152 GLY A 162 1 11 HELIX 9 9 VAL B 11 HIS B 16 1 6 HELIX 10 10 THR B 21 LYS B 26 5 6 HELIX 11 11 THR B 27 SER B 41 1 15 HELIX 12 12 GLU B 58 GLY B 63 1 6 HELIX 13 13 ASP B 70 GLU B 74 5 5 HELIX 14 14 ILE B 76 ARG B 80 5 5 HELIX 15 15 ASN B 100 ASN B 108 1 9 HELIX 16 16 ILE B 122 ARG B 134 1 13 HELIX 17 17 ASN B 152 GLY B 162 1 11 SHEET 1 A 6 TYR A 86 LYS A 90 0 SHEET 2 A 6 VAL A 45 ASP A 50 1 N TYR A 47 O TYR A 86 SHEET 3 A 6 PRO A 3 VAL A 8 1 N LEU A 5 O VAL A 46 SHEET 4 A 6 THR A 112 LEU A 118 1 O ILE A 116 N VAL A 8 SHEET 5 A 6 ARG A 137 ALA A 146 1 O ARG A 137 N VAL A 113 SHEET 6 A 6 THR A 164 LYS A 166 1 O LYS A 166 N VAL A 140 SHEET 1 B 6 TYR B 86 LYS B 90 0 SHEET 2 B 6 VAL B 45 ASP B 50 1 N TYR B 47 O LEU B 88 SHEET 3 B 6 PRO B 3 VAL B 8 1 N LEU B 5 O VAL B 46 SHEET 4 B 6 THR B 112 LEU B 118 1 O ILE B 116 N VAL B 8 SHEET 5 B 6 ARG B 137 ALA B 146 1 O ILE B 139 N LEU B 115 SHEET 6 B 6 THR B 164 LYS B 166 1 O LYS B 166 N VAL B 140 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ASP A 9 N MSE A 10 1555 1555 1.32 LINK C MSE A 10 N VAL A 11 1555 1555 1.34 LINK C ALA A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N LYS A 26 1555 1555 1.33 LINK C SER A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N LYS A 68 1555 1555 1.34 LINK C ASP A 102 N MSE A 103 1555 1555 1.32 LINK C MSE A 103 N ILE A 104 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.34 LINK C ASP B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N VAL B 11 1555 1555 1.33 LINK C ALA B 24 N MSE B 25 1555 1555 1.32 LINK C MSE B 25 N LYS B 26 1555 1555 1.33 LINK C SER B 66 N MSE B 67 1555 1555 1.32 LINK C MSE B 67 N LYS B 68 1555 1555 1.33 LINK C ASP B 102 N MSE B 103 1555 1555 1.33 LINK C MSE B 103 N ILE B 104 1555 1555 1.31 LINK OD2 ASP A 50 ZN ZN A 183 1555 1555 2.03 LINK NE2 HIS A 52 ZN ZN A 183 1555 1555 2.21 LINK OE1 GLU A 58 ZN ZN A 183 1555 1555 2.00 LINK NE2 HIS A 65 ZN ZN A 183 1555 1555 2.20 LINK OD2 ASP B 50 ZN ZN B 183 1555 1555 2.01 LINK NE2 HIS B 52 ZN ZN B 183 1555 1555 2.18 LINK OE1 GLU B 58 ZN ZN B 183 1555 1555 2.02 LINK NE2 HIS B 65 ZN ZN B 183 1555 1555 2.17 CISPEP 1 LEU A 118 ASP A 119 0 -11.32 CISPEP 2 ALA B 83 GLY B 84 0 -19.89 CISPEP 3 LEU B 118 ASP B 119 0 -8.22 SITE 1 AC1 4 ASP A 50 HIS A 52 GLU A 58 HIS A 65 SITE 1 AC2 5 HOH A 190 ASP B 50 HIS B 52 GLU B 58 SITE 2 AC2 5 HIS B 65 CRYST1 83.970 83.970 98.725 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011910 0.006880 0.000000 0.00000 SCALE2 0.000000 0.013750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010130 0.00000 HETATM 1 N MSE A 1 -27.144 10.372 31.031 1.00 56.67 N HETATM 2 CA MSE A 1 -26.260 11.429 30.438 1.00 59.52 C HETATM 3 C MSE A 1 -26.891 12.095 29.199 1.00 57.28 C HETATM 4 O MSE A 1 -27.444 11.414 28.336 1.00 56.82 O HETATM 5 CB MSE A 1 -24.924 10.797 30.056 1.00 61.81 C HETATM 6 CG MSE A 1 -24.031 11.650 29.143 1.00 69.73 C HETATM 7 SE MSE A 1 -22.440 10.726 28.367 1.00 87.24 SE HETATM 8 CE MSE A 1 -21.717 10.072 30.106 1.00 79.25 C