data_3EFA # _entry.id 3EFA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3EFA RCSB RCSB049250 WWPDB D_1000049250 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC60695 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EFA _pdbx_database_status.recvd_initial_deposition_date 2008-09-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Li, H.' 2 'Cobb, G.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of putative N-acetyltransferase from Lactobacillus plantarum' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Li, H.' 2 primary 'Cobb, G.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3EFA _cell.length_a 84.673 _cell.length_b 84.673 _cell.length_c 174.074 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EFA _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative Acetyltransferase' 16723.426 1 ? ? ? ? 2 non-polymer syn 'FORMIC ACID' 46.025 4 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 water nat water 18.015 66 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)KIIFSASPANRAAAYALRQAVFVEERGISADVEFDVKDTDQCEYAVLYLQPDLPITTLRLEPQADHV(MSE) RFGRVCTRKAYRGHGWGRQLLTAAEEWATQRGFTHGEIHGELTAQRFYELCGYRVTAGPYDEDGAPVVI(MSE)HKQLL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMKIIFSASPANRAAAYALRQAVFVEERGISADVEFDVKDTDQCEYAVLYLQPDLPITTLRLEPQADHVMRFGRVCTR KAYRGHGWGRQLLTAAEEWATQRGFTHGEIHGELTAQRFYELCGYRVTAGPYDEDGAPVVIMHKQLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC60695 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 LYS n 1 6 ILE n 1 7 ILE n 1 8 PHE n 1 9 SER n 1 10 ALA n 1 11 SER n 1 12 PRO n 1 13 ALA n 1 14 ASN n 1 15 ARG n 1 16 ALA n 1 17 ALA n 1 18 ALA n 1 19 TYR n 1 20 ALA n 1 21 LEU n 1 22 ARG n 1 23 GLN n 1 24 ALA n 1 25 VAL n 1 26 PHE n 1 27 VAL n 1 28 GLU n 1 29 GLU n 1 30 ARG n 1 31 GLY n 1 32 ILE n 1 33 SER n 1 34 ALA n 1 35 ASP n 1 36 VAL n 1 37 GLU n 1 38 PHE n 1 39 ASP n 1 40 VAL n 1 41 LYS n 1 42 ASP n 1 43 THR n 1 44 ASP n 1 45 GLN n 1 46 CYS n 1 47 GLU n 1 48 TYR n 1 49 ALA n 1 50 VAL n 1 51 LEU n 1 52 TYR n 1 53 LEU n 1 54 GLN n 1 55 PRO n 1 56 ASP n 1 57 LEU n 1 58 PRO n 1 59 ILE n 1 60 THR n 1 61 THR n 1 62 LEU n 1 63 ARG n 1 64 LEU n 1 65 GLU n 1 66 PRO n 1 67 GLN n 1 68 ALA n 1 69 ASP n 1 70 HIS n 1 71 VAL n 1 72 MSE n 1 73 ARG n 1 74 PHE n 1 75 GLY n 1 76 ARG n 1 77 VAL n 1 78 CYS n 1 79 THR n 1 80 ARG n 1 81 LYS n 1 82 ALA n 1 83 TYR n 1 84 ARG n 1 85 GLY n 1 86 HIS n 1 87 GLY n 1 88 TRP n 1 89 GLY n 1 90 ARG n 1 91 GLN n 1 92 LEU n 1 93 LEU n 1 94 THR n 1 95 ALA n 1 96 ALA n 1 97 GLU n 1 98 GLU n 1 99 TRP n 1 100 ALA n 1 101 THR n 1 102 GLN n 1 103 ARG n 1 104 GLY n 1 105 PHE n 1 106 THR n 1 107 HIS n 1 108 GLY n 1 109 GLU n 1 110 ILE n 1 111 HIS n 1 112 GLY n 1 113 GLU n 1 114 LEU n 1 115 THR n 1 116 ALA n 1 117 GLN n 1 118 ARG n 1 119 PHE n 1 120 TYR n 1 121 GLU n 1 122 LEU n 1 123 CYS n 1 124 GLY n 1 125 TYR n 1 126 ARG n 1 127 VAL n 1 128 THR n 1 129 ALA n 1 130 GLY n 1 131 PRO n 1 132 TYR n 1 133 ASP n 1 134 GLU n 1 135 ASP n 1 136 GLY n 1 137 ALA n 1 138 PRO n 1 139 VAL n 1 140 VAL n 1 141 ILE n 1 142 MSE n 1 143 HIS n 1 144 LYS n 1 145 GLN n 1 146 LEU n 1 147 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lp_1797 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactobacillus plantarum WCFS1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 220668 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) derivatives' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q88W61_LACPL _struct_ref.pdbx_db_accession Q88W61 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKIIFSASPANRAAAYALRQAVFVEERGISADVEFDVKDTDQCEYAVLYLQPDLPITTLRLEPQADHVMRFGRVCTRKAY RGHGWGRQLLTAAEEWATQRGFTHGEIHGELTAQRFYELCGYRVTAGPYDEDGAPVVIMHKQLL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EFA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q88W61 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 144 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 144 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EFA SER A 1 ? UNP Q88W61 ? ? 'expression tag' -2 1 1 3EFA ASN A 2 ? UNP Q88W61 ? ? 'expression tag' -1 2 1 3EFA ALA A 3 ? UNP Q88W61 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3EFA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1M Bis-TRIS 0.5M Magnesium formate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-07-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97931 # _reflns.entry_id 3EFA _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.40 _reflns.number_obs 14578 _reflns.number_all 14713 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 48.35 _reflns.B_iso_Wilson_estimate 54.0 _reflns.pdbx_redundancy 12.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.537 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.90 _reflns_shell.pdbx_redundancy 13.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 332 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3EFA _refine.ls_number_reflns_obs 14517 _refine.ls_number_reflns_all 15250 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.877 _refine.ls_d_res_high 2.423 _refine.ls_percent_reflns_obs 98.76 _refine.ls_R_factor_obs 0.2077 _refine.ls_R_factor_all 0.2077 _refine.ls_R_factor_R_work 0.2062 _refine.ls_R_factor_R_free 0.2366 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.05 _refine.ls_number_reflns_R_free 733 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.343 _refine.solvent_model_param_bsol 68.757 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.30 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1160 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 1249 _refine_hist.d_res_high 2.423 _refine_hist.d_res_low 35.877 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? f_angle_deg 1.156 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.4231 2.6101 2626 0.2243 98.00 0.2545 . . 156 . . 3034 . 'X-RAY DIFFRACTION' . 2.6101 2.8727 2718 0.2132 100.00 0.2682 . . 156 . . 2921 . 'X-RAY DIFFRACTION' . 2.8727 3.2881 2764 0.2181 100.00 0.2763 . . 142 . . 2906 . 'X-RAY DIFFRACTION' . 3.2881 4.1417 2763 0.1945 99.00 0.2140 . . 158 . . 2874 . 'X-RAY DIFFRACTION' . 4.1417 35.8812 2913 0.1931 96.00 0.2121 . . 121 . . 2782 . 'X-RAY DIFFRACTION' # _struct.entry_id 3EFA _struct.title 'Crystal structure of putative N-acetyltransferase from Lactobacillus plantarum' _struct.pdbx_descriptor 'Putative Acetyltransferase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EFA _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;acetyltransferase, Lactobacillus plantarum, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 11 ? PHE A 26 ? SER A 8 PHE A 23 1 ? 16 HELX_P HELX_P2 2 SER A 33 ? PHE A 38 ? SER A 30 PHE A 35 1 ? 6 HELX_P HELX_P3 3 LYS A 81 ? ARG A 84 ? LYS A 78 ARG A 81 5 ? 4 HELX_P HELX_P4 4 GLY A 87 ? ARG A 103 ? GLY A 84 ARG A 100 1 ? 17 HELX_P HELX_P5 5 ALA A 116 ? CYS A 123 ? ALA A 113 CYS A 120 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A LYS 5 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A VAL 71 C ? ? ? 1_555 A MSE 72 N ? ? A VAL 68 A MSE 69 1_555 ? ? ? ? ? ? ? 1.337 ? covale4 covale ? ? A MSE 72 C ? ? ? 1_555 A ARG 73 N ? ? A MSE 69 A ARG 70 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? A ILE 141 C ? ? ? 1_555 A MSE 142 N ? ? A ILE 138 A MSE 139 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? A MSE 142 C ? ? ? 1_555 A HIS 143 N ? ? A MSE 139 A HIS 140 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 130 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 127 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 131 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 128 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.14 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 5 ? SER A 9 ? LYS A 2 SER A 6 A 2 TYR A 48 ? GLN A 54 ? TYR A 45 GLN A 51 A 3 LEU A 57 ? PRO A 66 ? LEU A 54 PRO A 63 A 4 VAL A 71 ? THR A 79 ? VAL A 68 THR A 76 A 5 HIS A 107 ? GLU A 113 ? HIS A 104 GLU A 110 A 6 VAL A 139 ? GLN A 145 ? VAL A 136 GLN A 142 A 7 ARG A 126 ? ALA A 129 ? ARG A 123 ALA A 126 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 5 ? N LYS A 2 O TYR A 52 ? O TYR A 49 A 2 3 N ALA A 49 ? N ALA A 46 O LEU A 62 ? O LEU A 59 A 3 4 N ARG A 63 ? N ARG A 60 O GLY A 75 ? O GLY A 72 A 4 5 N MSE A 72 ? N MSE A 69 O HIS A 107 ? O HIS A 104 A 5 6 N ILE A 110 ? N ILE A 107 O MSE A 142 ? O MSE A 139 A 6 7 O ILE A 141 ? O ILE A 138 N THR A 128 ? N THR A 125 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE FMT A 201' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE FMT A 202' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FMT A 203' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ARG A 73 ? ARG A 70 . ? 12_564 ? 2 AC1 6 HIS A 111 ? HIS A 108 . ? 12_564 ? 3 AC1 6 THR A 128 ? THR A 125 . ? 1_555 ? 4 AC1 6 ALA A 129 ? ALA A 126 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 219 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH A 236 . ? 1_555 ? 7 AC2 6 THR A 79 ? THR A 76 . ? 1_555 ? 8 AC2 6 ARG A 84 ? ARG A 81 . ? 1_555 ? 9 AC2 6 GLY A 85 ? GLY A 82 . ? 1_555 ? 10 AC2 6 GLY A 89 ? GLY A 86 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH A 210 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH A 232 . ? 1_555 ? 13 AC3 4 GLY A 124 ? GLY A 121 . ? 1_555 ? 14 AC3 4 ARG A 126 ? ARG A 123 . ? 1_555 ? 15 AC3 4 HIS A 143 ? HIS A 140 . ? 1_555 ? 16 AC3 4 GLN A 145 ? GLN A 142 . ? 1_555 ? 17 AC4 4 PHE A 26 ? PHE A 23 . ? 1_555 ? 18 AC4 4 GLU A 37 ? GLU A 34 . ? 1_555 ? 19 AC4 4 ARG A 76 ? ARG A 73 . ? 1_555 ? 20 AC4 4 ASP A 135 ? ASP A 132 . ? 1_555 ? # _database_PDB_matrix.entry_id 3EFA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3EFA _atom_sites.fract_transf_matrix[1][1] 0.011810 _atom_sites.fract_transf_matrix[1][2] 0.006819 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013637 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005745 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 LYS 5 2 2 LYS LYS A . n A 1 6 ILE 6 3 3 ILE ILE A . n A 1 7 ILE 7 4 4 ILE ILE A . n A 1 8 PHE 8 5 5 PHE PHE A . n A 1 9 SER 9 6 6 SER SER A . n A 1 10 ALA 10 7 7 ALA ALA A . n A 1 11 SER 11 8 8 SER SER A . n A 1 12 PRO 12 9 9 PRO PRO A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 ASN 14 11 11 ASN ASN A . n A 1 15 ARG 15 12 12 ARG ARG A . n A 1 16 ALA 16 13 13 ALA ALA A . n A 1 17 ALA 17 14 14 ALA ALA A . n A 1 18 ALA 18 15 15 ALA ALA A . n A 1 19 TYR 19 16 16 TYR TYR A . n A 1 20 ALA 20 17 17 ALA ALA A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 ARG 22 19 19 ARG ARG A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 ALA 24 21 21 ALA ALA A . n A 1 25 VAL 25 22 22 VAL VAL A . n A 1 26 PHE 26 23 23 PHE PHE A . n A 1 27 VAL 27 24 24 VAL VAL A . n A 1 28 GLU 28 25 25 GLU GLU A . n A 1 29 GLU 29 26 26 GLU GLU A . n A 1 30 ARG 30 27 27 ARG ARG A . n A 1 31 GLY 31 28 28 GLY GLY A . n A 1 32 ILE 32 29 29 ILE ILE A . n A 1 33 SER 33 30 30 SER SER A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 ASP 35 32 32 ASP ASP A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 PHE 38 35 35 PHE PHE A . n A 1 39 ASP 39 36 36 ASP ASP A . n A 1 40 VAL 40 37 37 VAL VAL A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 ASP 42 39 39 ASP ASP A . n A 1 43 THR 43 40 40 THR THR A . n A 1 44 ASP 44 41 41 ASP ASP A . n A 1 45 GLN 45 42 42 GLN GLN A . n A 1 46 CYS 46 43 43 CYS CYS A . n A 1 47 GLU 47 44 44 GLU GLU A . n A 1 48 TYR 48 45 45 TYR TYR A . n A 1 49 ALA 49 46 46 ALA ALA A . n A 1 50 VAL 50 47 47 VAL VAL A . n A 1 51 LEU 51 48 48 LEU LEU A . n A 1 52 TYR 52 49 49 TYR TYR A . n A 1 53 LEU 53 50 50 LEU LEU A . n A 1 54 GLN 54 51 51 GLN GLN A . n A 1 55 PRO 55 52 52 PRO PRO A . n A 1 56 ASP 56 53 53 ASP ASP A . n A 1 57 LEU 57 54 54 LEU LEU A . n A 1 58 PRO 58 55 55 PRO PRO A . n A 1 59 ILE 59 56 56 ILE ILE A . n A 1 60 THR 60 57 57 THR THR A . n A 1 61 THR 61 58 58 THR THR A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 ARG 63 60 60 ARG ARG A . n A 1 64 LEU 64 61 61 LEU LEU A . n A 1 65 GLU 65 62 62 GLU GLU A . n A 1 66 PRO 66 63 63 PRO PRO A . n A 1 67 GLN 67 64 64 GLN GLN A . n A 1 68 ALA 68 65 65 ALA ALA A . n A 1 69 ASP 69 66 66 ASP ASP A . n A 1 70 HIS 70 67 67 HIS HIS A . n A 1 71 VAL 71 68 68 VAL VAL A . n A 1 72 MSE 72 69 69 MSE MSE A . n A 1 73 ARG 73 70 70 ARG ARG A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 GLY 75 72 72 GLY GLY A . n A 1 76 ARG 76 73 73 ARG ARG A . n A 1 77 VAL 77 74 74 VAL VAL A . n A 1 78 CYS 78 75 75 CYS CYS A . n A 1 79 THR 79 76 76 THR THR A . n A 1 80 ARG 80 77 77 ARG ARG A . n A 1 81 LYS 81 78 78 LYS LYS A . n A 1 82 ALA 82 79 79 ALA ALA A . n A 1 83 TYR 83 80 80 TYR TYR A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 GLY 85 82 82 GLY GLY A . n A 1 86 HIS 86 83 83 HIS HIS A . n A 1 87 GLY 87 84 84 GLY GLY A . n A 1 88 TRP 88 85 85 TRP TRP A . n A 1 89 GLY 89 86 86 GLY GLY A . n A 1 90 ARG 90 87 87 ARG ARG A . n A 1 91 GLN 91 88 88 GLN GLN A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 THR 94 91 91 THR THR A . n A 1 95 ALA 95 92 92 ALA ALA A . n A 1 96 ALA 96 93 93 ALA ALA A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 GLU 98 95 95 GLU GLU A . n A 1 99 TRP 99 96 96 TRP TRP A . n A 1 100 ALA 100 97 97 ALA ALA A . n A 1 101 THR 101 98 98 THR THR A . n A 1 102 GLN 102 99 99 GLN GLN A . n A 1 103 ARG 103 100 100 ARG ARG A . n A 1 104 GLY 104 101 101 GLY GLY A . n A 1 105 PHE 105 102 102 PHE PHE A . n A 1 106 THR 106 103 103 THR THR A . n A 1 107 HIS 107 104 104 HIS HIS A . n A 1 108 GLY 108 105 105 GLY GLY A . n A 1 109 GLU 109 106 106 GLU GLU A . n A 1 110 ILE 110 107 107 ILE ILE A . n A 1 111 HIS 111 108 108 HIS HIS A . n A 1 112 GLY 112 109 109 GLY GLY A . n A 1 113 GLU 113 110 110 GLU GLU A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 THR 115 112 112 THR THR A . n A 1 116 ALA 116 113 113 ALA ALA A . n A 1 117 GLN 117 114 114 GLN GLN A . n A 1 118 ARG 118 115 115 ARG ARG A . n A 1 119 PHE 119 116 116 PHE PHE A . n A 1 120 TYR 120 117 117 TYR TYR A . n A 1 121 GLU 121 118 118 GLU GLU A . n A 1 122 LEU 122 119 119 LEU LEU A . n A 1 123 CYS 123 120 120 CYS CYS A . n A 1 124 GLY 124 121 121 GLY GLY A . n A 1 125 TYR 125 122 122 TYR TYR A . n A 1 126 ARG 126 123 123 ARG ARG A . n A 1 127 VAL 127 124 124 VAL VAL A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 ALA 129 126 126 ALA ALA A . n A 1 130 GLY 130 127 127 GLY GLY A . n A 1 131 PRO 131 128 128 PRO PRO A . n A 1 132 TYR 132 129 129 TYR TYR A . n A 1 133 ASP 133 130 130 ASP ASP A . n A 1 134 GLU 134 131 131 GLU GLU A . n A 1 135 ASP 135 132 132 ASP ASP A . n A 1 136 GLY 136 133 133 GLY GLY A . n A 1 137 ALA 137 134 134 ALA ALA A . n A 1 138 PRO 138 135 135 PRO PRO A . n A 1 139 VAL 139 136 136 VAL VAL A . n A 1 140 VAL 140 137 137 VAL VAL A . n A 1 141 ILE 141 138 138 ILE ILE A . n A 1 142 MSE 142 139 139 MSE MSE A . n A 1 143 HIS 143 140 140 HIS HIS A . n A 1 144 LYS 144 141 141 LYS LYS A . n A 1 145 GLN 145 142 142 GLN GLN A . n A 1 146 LEU 146 143 143 LEU LEU A . n A 1 147 LEU 147 144 144 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 72 A MSE 69 ? MET SELENOMETHIONINE 3 A MSE 142 A MSE 139 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3360 ? 1 MORE -20 ? 1 'SSA (A^2)' 15400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5000000000 0.8660254038 0.0000000000 -42.3365000000 0.8660254038 -0.5000000000 0.0000000000 73.3289690146 0.0000000000 0.0000000000 -1.0000000000 -29.0123333333 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id PO4 _pdbx_struct_special_symmetry.auth_seq_id 206 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id PO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -3.2564 52.8427 8.7287 0.4035 0.2916 0.3403 -0.0320 0.0033 -0.0376 0.2989 1.0026 1.1168 0.2907 -0.7536 -1.7616 0.0584 0.0555 -0.0001 0.3008 0.0169 0.0492 -0.2981 0.2264 0.1463 'X-RAY DIFFRACTION' 2 ? refined 1.0651 61.6960 2.3665 0.3665 0.2977 0.3228 -0.0250 0.0375 -0.0258 1.3367 1.3140 2.5613 0.0187 -0.7501 -0.6293 0.0345 0.0747 -0.0002 -0.0140 0.1640 -0.0347 -0.0072 -0.2876 0.3513 'X-RAY DIFFRACTION' 3 ? refined -3.1844 57.8125 -11.7629 0.4334 0.4941 0.3734 0.1155 0.0128 -0.0799 1.3028 1.6162 3.1740 -0.7638 0.4574 0.8224 0.2585 -0.3651 -0.0001 -0.2059 0.0713 0.3884 -0.1214 -0.2681 -0.5562 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 ? ? ? ? ? ? ? ? ? 'chain A and resid 1-43' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain A and resid 44-107' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'chain A and resid 108-144' 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHARP phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 73 ? ? 38.66 55.67 2 1 TYR A 129 ? ? -127.22 -121.27 3 1 ASP A 130 ? ? 175.28 128.65 4 1 ASP A 132 ? ? 59.50 6.78 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id -2 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 GLYCEROL GOL 4 'PHOSPHATE ION' PO4 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT 1 201 201 FMT FMT A . C 2 FMT 1 202 202 FMT FMT A . D 2 FMT 1 203 203 FMT FMT A . E 2 FMT 1 204 204 FMT FMT A . F 3 GOL 1 205 205 GOL GOL A . G 4 PO4 1 206 206 PO4 PO4 A . H 5 HOH 1 207 1 HOH HOH A . H 5 HOH 2 208 2 HOH HOH A . H 5 HOH 3 209 3 HOH HOH A . H 5 HOH 4 210 4 HOH HOH A . H 5 HOH 5 211 5 HOH HOH A . H 5 HOH 6 212 6 HOH HOH A . H 5 HOH 7 213 7 HOH HOH A . H 5 HOH 8 214 8 HOH HOH A . H 5 HOH 9 215 9 HOH HOH A . H 5 HOH 10 216 10 HOH HOH A . H 5 HOH 11 217 11 HOH HOH A . H 5 HOH 12 218 12 HOH HOH A . H 5 HOH 13 219 13 HOH HOH A . H 5 HOH 14 220 14 HOH HOH A . H 5 HOH 15 221 15 HOH HOH A . H 5 HOH 16 222 16 HOH HOH A . H 5 HOH 17 223 17 HOH HOH A . H 5 HOH 18 224 18 HOH HOH A . H 5 HOH 19 225 19 HOH HOH A . H 5 HOH 20 226 20 HOH HOH A . H 5 HOH 21 227 21 HOH HOH A . H 5 HOH 22 228 22 HOH HOH A . H 5 HOH 23 229 23 HOH HOH A . H 5 HOH 24 230 24 HOH HOH A . H 5 HOH 25 231 25 HOH HOH A . H 5 HOH 26 232 26 HOH HOH A . H 5 HOH 27 233 27 HOH HOH A . H 5 HOH 28 234 28 HOH HOH A . H 5 HOH 29 235 29 HOH HOH A . H 5 HOH 30 236 30 HOH HOH A . H 5 HOH 31 237 31 HOH HOH A . H 5 HOH 32 238 32 HOH HOH A . H 5 HOH 33 239 33 HOH HOH A . H 5 HOH 34 240 34 HOH HOH A . H 5 HOH 35 241 35 HOH HOH A . H 5 HOH 36 242 36 HOH HOH A . H 5 HOH 37 243 37 HOH HOH A . H 5 HOH 38 244 38 HOH HOH A . H 5 HOH 39 245 39 HOH HOH A . H 5 HOH 40 246 40 HOH HOH A . H 5 HOH 41 247 41 HOH HOH A . H 5 HOH 42 248 42 HOH HOH A . H 5 HOH 43 249 43 HOH HOH A . H 5 HOH 44 250 44 HOH HOH A . H 5 HOH 45 251 45 HOH HOH A . H 5 HOH 46 252 46 HOH HOH A . H 5 HOH 47 253 47 HOH HOH A . H 5 HOH 48 254 48 HOH HOH A . H 5 HOH 49 255 49 HOH HOH A . H 5 HOH 50 256 50 HOH HOH A . H 5 HOH 51 257 51 HOH HOH A . H 5 HOH 52 258 52 HOH HOH A . H 5 HOH 53 259 53 HOH HOH A . H 5 HOH 54 260 54 HOH HOH A . H 5 HOH 55 261 55 HOH HOH A . H 5 HOH 56 262 56 HOH HOH A . H 5 HOH 57 263 57 HOH HOH A . H 5 HOH 58 264 58 HOH HOH A . H 5 HOH 59 265 59 HOH HOH A . H 5 HOH 60 266 60 HOH HOH A . H 5 HOH 61 267 61 HOH HOH A . H 5 HOH 62 268 62 HOH HOH A . H 5 HOH 63 269 63 HOH HOH A . H 5 HOH 64 270 64 HOH HOH A . H 5 HOH 65 271 65 HOH HOH A . H 5 HOH 66 272 66 HOH HOH A . #