HEADER TRANSCRIPTION 11-SEP-08 3EGQ TITLE CRYSTAL STRUCTURE OF A TETR-FAMILY TRANSCRIPTIONAL REGULATOR (AF_1817) TITLE 2 FROM ARCHAEOGLOBUS FULGIDUS AT 2.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_COMMON: ARCHAEA; SOURCE 4 ORGANISM_TAXID: 2234; SOURCE 5 GENE: NP_070644.1, AF_1817; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DNA-BINDING, TRANSCRIPTION REGULATION, BACTERIAL REGULATORY PROTEINS, KEYWDS 2 DNA/RNA-BINDING 3-HELICAL BUNDLE FOLD, HELIX TURN HELIX MOTIF, HTH KEYWDS 3 MOTIF, TRANSCRIPTION REGULATOR, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 4 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 5 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 30-OCT-24 3EGQ 1 REMARK REVDAT 7 01-FEB-23 3EGQ 1 REMARK SEQADV REVDAT 6 24-JUL-19 3EGQ 1 REMARK LINK REVDAT 5 25-OCT-17 3EGQ 1 REMARK REVDAT 4 13-JUL-11 3EGQ 1 VERSN REVDAT 3 23-MAR-11 3EGQ 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3EGQ 1 VERSN REVDAT 1 07-OCT-08 3EGQ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TETR-FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (NP_070644.1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.55 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 13001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 643 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 846 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2515 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 67.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.63000 REMARK 3 B22 (A**2) : 4.45000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.713 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.263 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.718 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2621 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1794 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3510 ; 2.262 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4381 ; 1.903 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 2.488 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;24.356 ;23.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;10.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2856 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 538 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 569 ; 0.135 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1351 ; 0.091 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1238 ; 0.122 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1066 ; 0.063 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 29 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.089 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1981 ; 1.799 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 662 ; 0.406 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2612 ; 2.551 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1085 ; 6.073 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 898 ; 7.320 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 37 3 REMARK 3 1 B 5 B 37 3 REMARK 3 2 A 38 A 45 4 REMARK 3 2 B 38 B 45 4 REMARK 3 3 A 46 A 118 3 REMARK 3 3 B 46 B 118 3 REMARK 3 4 A 119 A 125 4 REMARK 3 4 B 119 B 125 4 REMARK 3 5 A 126 A 144 3 REMARK 3 5 B 126 B 144 3 REMARK 3 6 A 146 A 152 4 REMARK 3 6 B 146 B 152 4 REMARK 3 7 A 153 A 161 3 REMARK 3 7 B 153 B 161 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 791 ; 0.090 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 272 ; 0.440 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 853 ; 0.540 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 791 ; 0.140 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 272 ; 0.960 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 853 ; 2.660 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9103 32.1608 50.6475 REMARK 3 T TENSOR REMARK 3 T11: -0.0114 T22: -0.1166 REMARK 3 T33: -0.0810 T12: -0.0204 REMARK 3 T13: 0.0162 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 5.8278 L22: 2.2023 REMARK 3 L33: 2.7533 L12: -0.2174 REMARK 3 L13: 1.6307 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: -0.1158 S12: -0.4511 S13: 0.6280 REMARK 3 S21: 0.4035 S22: -0.1299 S23: -0.0220 REMARK 3 S31: -0.1711 S32: -0.0602 S33: 0.2458 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 164 REMARK 3 ORIGIN FOR THE GROUP (A): 40.3115 18.9062 28.9412 REMARK 3 T TENSOR REMARK 3 T11: -0.1296 T22: 0.0658 REMARK 3 T33: -0.1326 T12: -0.0131 REMARK 3 T13: 0.0207 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 1.9878 L22: 3.3902 REMARK 3 L33: 1.8147 L12: -1.4978 REMARK 3 L13: -0.5778 L23: 1.6749 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: 0.3846 S13: 0.1454 REMARK 3 S21: 0.0289 S22: -0.1404 S23: 0.0454 REMARK 3 S31: 0.0509 S32: -0.1643 S33: 0.1230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORA REMARK 3 DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE M REMARK 3 RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERIN REMARK 3 POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4.TWO PEG 200 FRAGMENT (PE8) FROM MOLECULES FROM THE REMARK 3 CRYSTALLIZATION REMARK 3 CONDITIONS WERE MODELED. REMARK 4 REMARK 4 3EGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.35 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97927, 0.97913 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13034 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.412 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 38.4% REMARK 280 POLYETHYLENE GLYCOL 200, 0.1M PHOSPHATE-CITRATE PH 4.35, REMARK 280 NANODROP', VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.77500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.52000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.77500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.52000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ARG A 166 REMARK 465 VAL A 167 REMARK 465 ARG A 168 REMARK 465 ALA A 169 REMARK 465 GLY B 0 REMARK 465 ARG B 165 REMARK 465 ARG B 166 REMARK 465 VAL B 167 REMARK 465 ARG B 168 REMARK 465 ALA B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 ASP A 3 OD1 OD2 REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 ARG A 7 NE CZ NH1 NH2 REMARK 470 LYS A 18 NZ REMARK 470 LYS A 19 NZ REMARK 470 ILE A 26 CG1 CG2 CD1 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ARG A 31 NE CZ NH1 NH2 REMARK 470 LYS A 34 NZ REMARK 470 SER A 36 OG REMARK 470 LYS A 37 CE NZ REMARK 470 LYS A 47 CE NZ REMARK 470 LYS A 49 CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 69 CZ NH1 NH2 REMARK 470 SER A 70 OG REMARK 470 GLU A 72 CD OE1 OE2 REMARK 470 ARG A 85 NH1 NH2 REMARK 470 GLN A 98 OE1 NE2 REMARK 470 ARG A 100 CD NE CZ NH1 NH2 REMARK 470 GLU A 103 CD OE1 OE2 REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 SER A 117 OG REMARK 470 LEU A 118 CD1 CD2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 126 NE CZ NH1 NH2 REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 SER A 164 OG REMARK 470 SER B 5 OG REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 37 CE NZ REMARK 470 SER B 38 OG REMARK 470 PHE B 41 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 47 NZ REMARK 470 MSE B 56 SE CE REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 61 CD CE NZ REMARK 470 GLU B 64 OE1 OE2 REMARK 470 GLU B 65 OE1 OE2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 85 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 98 OE1 NE2 REMARK 470 VAL B 99 CG1 CG2 REMARK 470 ARG B 100 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 GLU B 103 CD OE1 OE2 REMARK 470 LEU B 112 CD1 CD2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 LEU B 118 CD1 CD2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 126 CZ NH1 NH2 REMARK 470 GLU B 127 CD OE1 OE2 REMARK 470 ASP B 147 CG OD1 OD2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 LEU B 151 CD1 CD2 REMARK 470 GLU B 152 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 17 CB - CG - SE ANGL. DEV. = 20.1 DEGREES REMARK 500 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP B 3 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 GLU B 45 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 106 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 155 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 120 95.44 -61.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE8 A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE8 B 170 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 383741 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EGQ A 1 169 UNP O28458 O28458_ARCFU 1 169 DBREF 3EGQ B 1 169 UNP O28458 O28458_ARCFU 1 169 SEQADV 3EGQ GLY A 0 UNP O28458 EXPRESSION TAG SEQADV 3EGQ GLY B 0 UNP O28458 EXPRESSION TAG SEQRES 1 A 170 GLY MSE THR ASP GLN SER VAL ARG ILE ILE GLU ALA ALA SEQRES 2 A 170 LEU ARG LEU TYR MSE LYS LYS PRO PRO HIS GLU VAL SER SEQRES 3 A 170 ILE GLU GLU ILE ALA ARG GLU ALA LYS VAL SER LYS SER SEQRES 4 A 170 LEU ILE PHE TYR HIS PHE GLU SER LYS GLN LYS LEU LEU SEQRES 5 A 170 GLU GLU ALA VAL MSE HIS ALA PHE ARG LYS MSE MSE GLU SEQRES 6 A 170 GLU PHE ASN PRO ARG SER VAL GLU GLU VAL VAL ASP TYR SEQRES 7 A 170 GLY ILE GLY PHE ILE ALA GLU ARG ARG GLU PHE ILE GLU SEQRES 8 A 170 PHE MSE MSE TYR ALA LEU SER GLN VAL ARG ILE GLU GLU SEQRES 9 A 170 LEU GLU ARG MSE PHE GLY GLU ALA LEU GLU LYS VAL ALA SEQRES 10 A 170 SER LEU PHE GLU GLY CYS ARG HIS PRO ARG GLU THR ALA SEQRES 11 A 170 ILE ALA LEU MSE ALA MSE LEU ASP GLY LEU SER ILE TYR SEQRES 12 A 170 SER LEU TYR PHE ASP LEU GLY LYS LEU GLU LYS TYR ARG SEQRES 13 A 170 GLU ILE ALA MSE GLU PHE VAL GLU SER ARG ARG VAL ARG SEQRES 14 A 170 ALA SEQRES 1 B 170 GLY MSE THR ASP GLN SER VAL ARG ILE ILE GLU ALA ALA SEQRES 2 B 170 LEU ARG LEU TYR MSE LYS LYS PRO PRO HIS GLU VAL SER SEQRES 3 B 170 ILE GLU GLU ILE ALA ARG GLU ALA LYS VAL SER LYS SER SEQRES 4 B 170 LEU ILE PHE TYR HIS PHE GLU SER LYS GLN LYS LEU LEU SEQRES 5 B 170 GLU GLU ALA VAL MSE HIS ALA PHE ARG LYS MSE MSE GLU SEQRES 6 B 170 GLU PHE ASN PRO ARG SER VAL GLU GLU VAL VAL ASP TYR SEQRES 7 B 170 GLY ILE GLY PHE ILE ALA GLU ARG ARG GLU PHE ILE GLU SEQRES 8 B 170 PHE MSE MSE TYR ALA LEU SER GLN VAL ARG ILE GLU GLU SEQRES 9 B 170 LEU GLU ARG MSE PHE GLY GLU ALA LEU GLU LYS VAL ALA SEQRES 10 B 170 SER LEU PHE GLU GLY CYS ARG HIS PRO ARG GLU THR ALA SEQRES 11 B 170 ILE ALA LEU MSE ALA MSE LEU ASP GLY LEU SER ILE TYR SEQRES 12 B 170 SER LEU TYR PHE ASP LEU GLY LYS LEU GLU LYS TYR ARG SEQRES 13 B 170 GLU ILE ALA MSE GLU PHE VAL GLU SER ARG ARG VAL ARG SEQRES 14 B 170 ALA MODRES 3EGQ MSE A 1 MET SELENOMETHIONINE MODRES 3EGQ MSE A 17 MET SELENOMETHIONINE MODRES 3EGQ MSE A 56 MET SELENOMETHIONINE MODRES 3EGQ MSE A 62 MET SELENOMETHIONINE MODRES 3EGQ MSE A 63 MET SELENOMETHIONINE MODRES 3EGQ MSE A 92 MET SELENOMETHIONINE MODRES 3EGQ MSE A 93 MET SELENOMETHIONINE MODRES 3EGQ MSE A 107 MET SELENOMETHIONINE MODRES 3EGQ MSE A 133 MET SELENOMETHIONINE MODRES 3EGQ MSE A 135 MET SELENOMETHIONINE MODRES 3EGQ MSE A 159 MET SELENOMETHIONINE MODRES 3EGQ MSE B 1 MET SELENOMETHIONINE MODRES 3EGQ MSE B 17 MET SELENOMETHIONINE MODRES 3EGQ MSE B 56 MET SELENOMETHIONINE MODRES 3EGQ MSE B 62 MET SELENOMETHIONINE MODRES 3EGQ MSE B 63 MET SELENOMETHIONINE MODRES 3EGQ MSE B 92 MET SELENOMETHIONINE MODRES 3EGQ MSE B 93 MET SELENOMETHIONINE MODRES 3EGQ MSE B 107 MET SELENOMETHIONINE MODRES 3EGQ MSE B 133 MET SELENOMETHIONINE MODRES 3EGQ MSE B 135 MET SELENOMETHIONINE MODRES 3EGQ MSE B 159 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 17 8 HET MSE A 56 8 HET MSE A 62 8 HET MSE A 63 8 HET MSE A 92 8 HET MSE A 93 8 HET MSE A 107 8 HET MSE A 133 8 HET MSE A 135 8 HET MSE A 159 8 HET MSE B 1 8 HET MSE B 17 8 HET MSE B 56 6 HET MSE B 62 16 HET MSE B 63 8 HET MSE B 92 8 HET MSE B 93 8 HET MSE B 107 8 HET MSE B 133 8 HET MSE B 135 8 HET MSE B 159 8 HET PE8 A 170 25 HET PE8 B 170 25 HETNAM MSE SELENOMETHIONINE HETNAM PE8 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 PE8 2(C16 H34 O9) FORMUL 5 HOH *9(H2 O) HELIX 1 1 THR A 2 MSE A 17 1 16 HELIX 2 2 PRO A 20 VAL A 24 5 5 HELIX 3 3 SER A 25 LYS A 34 1 10 HELIX 4 4 SER A 36 PHE A 44 1 9 HELIX 5 5 SER A 46 GLU A 65 1 20 HELIX 6 6 SER A 70 ALA A 83 1 14 HELIX 7 7 ARG A 85 GLN A 98 1 14 HELIX 8 8 ARG A 100 PHE A 119 1 20 HELIX 9 9 HIS A 124 PHE A 146 1 23 HELIX 10 10 LYS A 150 SER A 164 1 15 HELIX 11 11 THR B 2 LYS B 19 1 18 HELIX 12 12 PRO B 20 VAL B 24 5 5 HELIX 13 13 SER B 25 LYS B 34 1 10 HELIX 14 14 SER B 36 PHE B 44 1 9 HELIX 15 15 SER B 46 GLU B 65 1 20 HELIX 16 16 SER B 70 ALA B 83 1 14 HELIX 17 17 ARG B 85 GLN B 98 1 14 HELIX 18 18 ARG B 100 PHE B 119 1 20 HELIX 19 19 HIS B 124 LEU B 144 1 21 HELIX 20 20 LYS B 150 GLU B 163 1 14 LINK C MSE A 1 N THR A 2 1555 1555 1.35 LINK C TYR A 16 N MSE A 17 1555 1555 1.35 LINK C MSE A 17 N LYS A 18 1555 1555 1.35 LINK C VAL A 55 N MSE A 56 1555 1555 1.35 LINK C MSE A 56 N HIS A 57 1555 1555 1.34 LINK C LYS A 61 N MSE A 62 1555 1555 1.35 LINK C MSE A 62 N MSE A 63 1555 1555 1.34 LINK C MSE A 63 N GLU A 64 1555 1555 1.34 LINK C PHE A 91 N MSE A 92 1555 1555 1.34 LINK C MSE A 92 N MSE A 93 1555 1555 1.34 LINK C MSE A 93 N TYR A 94 1555 1555 1.34 LINK C ARG A 106 N MSE A 107 1555 1555 1.35 LINK C MSE A 107 N PHE A 108 1555 1555 1.34 LINK C LEU A 132 N MSE A 133 1555 1555 1.34 LINK C MSE A 133 N ALA A 134 1555 1555 1.36 LINK C ALA A 134 N MSE A 135 1555 1555 1.34 LINK C MSE A 135 N LEU A 136 1555 1555 1.35 LINK C ALA A 158 N MSE A 159 1555 1555 1.35 LINK C MSE A 159 N GLU A 160 1555 1555 1.34 LINK C MSE B 1 N THR B 2 1555 1555 1.34 LINK C TYR B 16 N MSE B 17 1555 1555 1.34 LINK C MSE B 17 N LYS B 18 1555 1555 1.34 LINK C VAL B 55 N MSE B 56 1555 1555 1.35 LINK C MSE B 56 N HIS B 57 1555 1555 1.35 LINK C LYS B 61 N AMSE B 62 1555 1555 1.33 LINK C LYS B 61 N BMSE B 62 1555 1555 1.35 LINK C AMSE B 62 N MSE B 63 1555 1555 1.34 LINK C BMSE B 62 N MSE B 63 1555 1555 1.34 LINK C MSE B 63 N GLU B 64 1555 1555 1.35 LINK C PHE B 91 N MSE B 92 1555 1555 1.34 LINK C MSE B 92 N MSE B 93 1555 1555 1.34 LINK C MSE B 93 N TYR B 94 1555 1555 1.34 LINK C ARG B 106 N MSE B 107 1555 1555 1.34 LINK C MSE B 107 N PHE B 108 1555 1555 1.34 LINK C LEU B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N ALA B 134 1555 1555 1.35 LINK C ALA B 134 N MSE B 135 1555 1555 1.34 LINK C MSE B 135 N LEU B 136 1555 1555 1.34 LINK C ALA B 158 N MSE B 159 1555 1555 1.35 LINK C MSE B 159 N GLU B 160 1555 1555 1.34 SITE 1 AC1 3 TYR A 77 LEU A 96 ASP A 137 SITE 1 AC2 2 MSE B 62 ASP B 137 CRYST1 57.550 61.040 109.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009096 0.00000 HETATM 1 N MSE A 1 59.953 25.812 68.812 1.00 75.35 N HETATM 2 CA MSE A 1 59.291 26.725 69.783 1.00 74.45 C HETATM 3 C MSE A 1 60.187 27.921 70.183 1.00 75.37 C HETATM 4 O MSE A 1 59.709 29.064 70.131 1.00 77.58 O HETATM 5 CB MSE A 1 58.846 25.944 71.030 1.00 73.56 C