data_3EGZ # _entry.id 3EGZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EGZ pdb_00003egz 10.2210/pdb3egz/pdb NDB PR0350 ? ? RCSB RCSB049310 ? ? WWPDB D_1000049310 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 4 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3EGZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xiao, H.' 1 'Edwards, T.E.' 2 ;Ferre-D'Amare, A.R. ; 3 # _citation.id primary _citation.title 'Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 15 _citation.page_first 1125 _citation.page_last 1137 _citation.year 2008 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18940672 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2008.09.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xiao, H.' 1 ? primary 'Edwards, T.E.' 2 ? primary ;Ferre-D'Amare, A.R. ; 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'U1 small nuclear ribonucleoprotein A' 11574.792 1 ? ? ? ? 2 polymer syn 'Tetracycline aptamer and artificial riboswitch' 20907.549 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 12 ? ? ? ? 4 non-polymer syn 7-CHLOROTETRACYCLINE 478.880 1 ? ? ? ? 5 water nat water 18.015 146 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'U1 snRNP protein A, U1A protein, U1-A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)AVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK(MSE)RGQAFVIFKEVSSATNALRS (MSE)QGFPFYDKP(MSE)RIQYAKTDSDIIAK(MSE)K ; ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMK ; A ? 2 polyribonucleotide no no GAGGGAGAGGUGAAGAAUACGACCACCUAGGUACCAUUGCACUCCGGUACCUAAAACAUACCCUC GAGGGAGAGGUGAAGAAUACGACCACCUAGGUACCAUUGCACUCCGGUACCUAAAACAUACCCUC B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 7-CHLOROTETRACYCLINE CTC 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ALA n 1 3 VAL n 1 4 PRO n 1 5 GLU n 1 6 THR n 1 7 ARG n 1 8 PRO n 1 9 ASN n 1 10 HIS n 1 11 THR n 1 12 ILE n 1 13 TYR n 1 14 ILE n 1 15 ASN n 1 16 ASN n 1 17 LEU n 1 18 ASN n 1 19 GLU n 1 20 LYS n 1 21 ILE n 1 22 LYS n 1 23 LYS n 1 24 ASP n 1 25 GLU n 1 26 LEU n 1 27 LYS n 1 28 LYS n 1 29 SER n 1 30 LEU n 1 31 HIS n 1 32 ALA n 1 33 ILE n 1 34 PHE n 1 35 SER n 1 36 ARG n 1 37 PHE n 1 38 GLY n 1 39 GLN n 1 40 ILE n 1 41 LEU n 1 42 ASP n 1 43 ILE n 1 44 LEU n 1 45 VAL n 1 46 SER n 1 47 ARG n 1 48 SER n 1 49 LEU n 1 50 LYS n 1 51 MSE n 1 52 ARG n 1 53 GLY n 1 54 GLN n 1 55 ALA n 1 56 PHE n 1 57 VAL n 1 58 ILE n 1 59 PHE n 1 60 LYS n 1 61 GLU n 1 62 VAL n 1 63 SER n 1 64 SER n 1 65 ALA n 1 66 THR n 1 67 ASN n 1 68 ALA n 1 69 LEU n 1 70 ARG n 1 71 SER n 1 72 MSE n 1 73 GLN n 1 74 GLY n 1 75 PHE n 1 76 PRO n 1 77 PHE n 1 78 TYR n 1 79 ASP n 1 80 LYS n 1 81 PRO n 1 82 MSE n 1 83 ARG n 1 84 ILE n 1 85 GLN n 1 86 TYR n 1 87 ALA n 1 88 LYS n 1 89 THR n 1 90 ASP n 1 91 SER n 1 92 ASP n 1 93 ILE n 1 94 ILE n 1 95 ALA n 1 96 LYS n 1 97 MSE n 1 98 LYS n 2 1 G n 2 2 A n 2 3 G n 2 4 G n 2 5 G n 2 6 A n 2 7 G n 2 8 A n 2 9 G n 2 10 G n 2 11 U n 2 12 G n 2 13 A n 2 14 A n 2 15 G n 2 16 A n 2 17 A n 2 18 U n 2 19 A n 2 20 C n 2 21 G n 2 22 A n 2 23 C n 2 24 C n 2 25 A n 2 26 C n 2 27 C n 2 28 U n 2 29 A n 2 30 G n 2 31 G n 2 32 U n 2 33 A n 2 34 C n 2 35 C n 2 36 A n 2 37 U n 2 38 U n 2 39 G n 2 40 C n 2 41 A n 2 42 C n 2 43 U n 2 44 C n 2 45 C n 2 46 G n 2 47 G n 2 48 U n 2 49 A n 2 50 C n 2 51 C n 2 52 U n 2 53 A n 2 54 A n 2 55 A n 2 56 A n 2 57 C n 2 58 A n 2 59 U n 2 60 A n 2 61 C n 2 62 C n 2 63 C n 2 64 U n 2 65 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SNRPA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'In vitro evolved aptamer' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CTC non-polymer . 7-CHLOROTETRACYCLINE ? 'C22 H23 Cl N2 O8' 478.880 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 196 ? ? ? A . n A 1 2 ALA 2 197 ? ? ? A . n A 1 3 VAL 3 198 ? ? ? A . n A 1 4 PRO 4 199 ? ? ? A . n A 1 5 GLU 5 200 ? ? ? A . n A 1 6 THR 6 201 201 THR THR A . n A 1 7 ARG 7 202 202 ARG ARG A . n A 1 8 PRO 8 203 203 PRO PRO A . n A 1 9 ASN 9 204 204 ASN ASN A . n A 1 10 HIS 10 205 205 HIS HIS A . n A 1 11 THR 11 206 206 THR THR A . n A 1 12 ILE 12 207 207 ILE ILE A . n A 1 13 TYR 13 208 208 TYR TYR A . n A 1 14 ILE 14 209 209 ILE ILE A . n A 1 15 ASN 15 210 210 ASN ASN A . n A 1 16 ASN 16 211 211 ASN ASN A . n A 1 17 LEU 17 212 212 LEU LEU A . n A 1 18 ASN 18 213 213 ASN ASN A . n A 1 19 GLU 19 214 214 GLU GLU A . n A 1 20 LYS 20 215 215 LYS LYS A . n A 1 21 ILE 21 216 216 ILE ILE A . n A 1 22 LYS 22 217 217 LYS LYS A . n A 1 23 LYS 23 218 218 LYS LYS A . n A 1 24 ASP 24 219 219 ASP ASP A . n A 1 25 GLU 25 220 220 GLU GLU A . n A 1 26 LEU 26 221 221 LEU LEU A . n A 1 27 LYS 27 222 222 LYS LYS A . n A 1 28 LYS 28 223 223 LYS LYS A . n A 1 29 SER 29 224 224 SER SER A . n A 1 30 LEU 30 225 225 LEU LEU A . n A 1 31 HIS 31 226 226 HIS HIS A . n A 1 32 ALA 32 227 227 ALA ALA A . n A 1 33 ILE 33 228 228 ILE ILE A . n A 1 34 PHE 34 229 229 PHE PHE A . n A 1 35 SER 35 230 230 SER SER A . n A 1 36 ARG 36 231 231 ARG ARG A . n A 1 37 PHE 37 232 232 PHE PHE A . n A 1 38 GLY 38 233 233 GLY GLY A . n A 1 39 GLN 39 234 234 GLN GLN A . n A 1 40 ILE 40 235 235 ILE ILE A . n A 1 41 LEU 41 236 236 LEU LEU A . n A 1 42 ASP 42 237 237 ASP ASP A . n A 1 43 ILE 43 238 238 ILE ILE A . n A 1 44 LEU 44 239 239 LEU LEU A . n A 1 45 VAL 45 240 240 VAL VAL A . n A 1 46 SER 46 241 241 SER SER A . n A 1 47 ARG 47 242 242 ARG ARG A . n A 1 48 SER 48 243 243 SER SER A . n A 1 49 LEU 49 244 244 LEU LEU A . n A 1 50 LYS 50 245 245 LYS LYS A . n A 1 51 MSE 51 246 246 MSE MSE A . n A 1 52 ARG 52 247 247 ARG ARG A . n A 1 53 GLY 53 248 248 GLY GLY A . n A 1 54 GLN 54 249 249 GLN GLN A . n A 1 55 ALA 55 250 250 ALA ALA A . n A 1 56 PHE 56 251 251 PHE PHE A . n A 1 57 VAL 57 252 252 VAL VAL A . n A 1 58 ILE 58 253 253 ILE ILE A . n A 1 59 PHE 59 254 254 PHE PHE A . n A 1 60 LYS 60 255 255 LYS LYS A . n A 1 61 GLU 61 256 256 GLU GLU A . n A 1 62 VAL 62 257 257 VAL VAL A . n A 1 63 SER 63 258 258 SER SER A . n A 1 64 SER 64 259 259 SER SER A . n A 1 65 ALA 65 260 260 ALA ALA A . n A 1 66 THR 66 261 261 THR THR A . n A 1 67 ASN 67 262 262 ASN ASN A . n A 1 68 ALA 68 263 263 ALA ALA A . n A 1 69 LEU 69 264 264 LEU LEU A . n A 1 70 ARG 70 265 265 ARG ARG A . n A 1 71 SER 71 266 266 SER SER A . n A 1 72 MSE 72 267 267 MSE MSE A . n A 1 73 GLN 73 268 268 GLN GLN A . n A 1 74 GLY 74 269 269 GLY GLY A . n A 1 75 PHE 75 270 270 PHE PHE A . n A 1 76 PRO 76 271 271 PRO PRO A . n A 1 77 PHE 77 272 272 PHE PHE A . n A 1 78 TYR 78 273 273 TYR TYR A . n A 1 79 ASP 79 274 274 ASP ASP A . n A 1 80 LYS 80 275 275 LYS LYS A . n A 1 81 PRO 81 276 276 PRO PRO A . n A 1 82 MSE 82 277 277 MSE MSE A . n A 1 83 ARG 83 278 278 ARG ARG A . n A 1 84 ILE 84 279 279 ILE ILE A . n A 1 85 GLN 85 280 280 GLN GLN A . n A 1 86 TYR 86 281 281 TYR TYR A . n A 1 87 ALA 87 282 282 ALA ALA A . n A 1 88 LYS 88 283 283 LYS LYS A . n A 1 89 THR 89 284 284 THR THR A . n A 1 90 ASP 90 285 285 ASP ASP A . n A 1 91 SER 91 286 286 SER SER A . n A 1 92 ASP 92 287 287 ASP ASP A . n A 1 93 ILE 93 288 288 ILE ILE A . n A 1 94 ILE 94 289 289 ILE ILE A . n A 1 95 ALA 95 290 290 ALA ALA A . n A 1 96 LYS 96 291 291 LYS LYS A . n A 1 97 MSE 97 292 ? ? ? A . n A 1 98 LYS 98 293 ? ? ? A . n B 2 1 G 1 1 1 G G B . n B 2 2 A 2 2 2 A A B . n B 2 3 G 3 3 3 G G B . n B 2 4 G 4 4 4 G G B . n B 2 5 G 5 5 5 G G B . n B 2 6 A 6 6 6 A A B . n B 2 7 G 7 7 7 G G B . n B 2 8 A 8 8 8 A A B . n B 2 9 G 9 9 9 G G B . n B 2 10 G 10 10 10 G G B . n B 2 11 U 11 11 11 U U B . n B 2 12 G 12 12 12 G G B . n B 2 13 A 13 13 13 A A B . n B 2 14 A 14 14 14 A A B . n B 2 15 G 15 15 15 G G B . n B 2 16 A 16 16 16 A A B . n B 2 17 A 17 17 17 A A B . n B 2 18 U 18 18 18 U U B . n B 2 19 A 19 19 19 A A B . n B 2 20 C 20 20 20 C C B . n B 2 21 G 21 21 21 G G B . n B 2 22 A 22 22 22 A A B . n B 2 23 C 23 23 23 C C B . n B 2 24 C 24 24 24 C C B . n B 2 25 A 25 25 25 A A B . n B 2 26 C 26 26 26 C C B . n B 2 27 C 27 27 27 C C B . n B 2 28 U 28 28 28 U U B . n B 2 29 A 29 29 29 A A B . n B 2 30 G 30 30 30 G G B . n B 2 31 G 31 31 31 G G B . n B 2 32 U 32 32 32 U U B . n B 2 33 A 33 33 33 A A B . n B 2 34 C 34 34 34 C C B . n B 2 35 C 35 35 35 C C B . n B 2 36 A 36 36 36 A A B . n B 2 37 U 37 37 37 U U B . n B 2 38 U 38 38 38 U U B . n B 2 39 G 39 39 39 G G B . n B 2 40 C 40 40 40 C C B . n B 2 41 A 41 41 41 A A B . n B 2 42 C 42 42 42 C C B . n B 2 43 U 43 43 43 U U B . n B 2 44 C 44 44 44 C C B . n B 2 45 C 45 45 45 C C B . n B 2 46 G 46 46 46 G G B . n B 2 47 G 47 47 47 G G B . n B 2 48 U 48 48 48 U U B . n B 2 49 A 49 49 49 A A B . n B 2 50 C 50 50 50 C C B . n B 2 51 C 51 51 51 C C B . n B 2 52 U 52 52 52 U U B . n B 2 53 A 53 53 53 A A B . n B 2 54 A 54 54 54 A A B . n B 2 55 A 55 55 55 A A B . n B 2 56 A 56 56 56 A A B . n B 2 57 C 57 57 57 C C B . n B 2 58 A 58 58 58 A A B . n B 2 59 U 59 59 59 U U B . n B 2 60 A 60 60 60 A A B . n B 2 61 C 61 61 61 C C B . n B 2 62 C 62 62 62 C C B . n B 2 63 C 63 63 63 C C B . n B 2 64 U 64 64 64 U U B . n B 2 65 C 65 65 65 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 510 510 MG MG A . D 4 CTC 1 601 601 CTC CTC B . E 3 MG 1 501 501 MG MG B . F 3 MG 1 502 502 MG MG B . G 3 MG 1 503 503 MG MG B . H 3 MG 1 504 504 MG MG B . I 3 MG 1 505 505 MG MG B . J 3 MG 1 506 506 MG MG B . K 3 MG 1 507 507 MG MG B . L 3 MG 1 508 508 MG MG B . M 3 MG 1 509 509 MG MG B . N 3 MG 1 511 511 MG MG B . O 3 MG 1 512 512 MG MG B . P 5 HOH 1 310 310 HOH HOH A . P 5 HOH 2 311 311 HOH HOH A . P 5 HOH 3 316 316 HOH HOH A . P 5 HOH 4 317 317 HOH HOH A . P 5 HOH 5 318 318 HOH HOH A . P 5 HOH 6 324 324 HOH HOH A . P 5 HOH 7 325 325 HOH HOH A . P 5 HOH 8 326 326 HOH HOH A . P 5 HOH 9 327 327 HOH HOH A . P 5 HOH 10 329 329 HOH HOH A . P 5 HOH 11 332 332 HOH HOH A . P 5 HOH 12 333 333 HOH HOH A . P 5 HOH 13 341 341 HOH HOH A . P 5 HOH 14 342 342 HOH HOH A . P 5 HOH 15 343 343 HOH HOH A . P 5 HOH 16 344 344 HOH HOH A . P 5 HOH 17 345 345 HOH HOH A . P 5 HOH 18 347 347 HOH HOH A . P 5 HOH 19 353 353 HOH HOH A . P 5 HOH 20 354 354 HOH HOH A . P 5 HOH 21 355 355 HOH HOH A . P 5 HOH 22 361 361 HOH HOH A . P 5 HOH 23 363 363 HOH HOH A . P 5 HOH 24 364 364 HOH HOH A . P 5 HOH 25 365 365 HOH HOH A . P 5 HOH 26 366 366 HOH HOH A . P 5 HOH 27 367 367 HOH HOH A . P 5 HOH 28 368 368 HOH HOH A . P 5 HOH 29 369 369 HOH HOH A . P 5 HOH 30 370 370 HOH HOH A . P 5 HOH 31 371 371 HOH HOH A . P 5 HOH 32 372 372 HOH HOH A . P 5 HOH 33 373 373 HOH HOH A . P 5 HOH 34 374 374 HOH HOH A . P 5 HOH 35 375 375 HOH HOH A . P 5 HOH 36 399 399 HOH HOH A . P 5 HOH 37 412 412 HOH HOH A . P 5 HOH 38 414 414 HOH HOH A . P 5 HOH 39 419 419 HOH HOH A . P 5 HOH 40 420 420 HOH HOH A . P 5 HOH 41 421 421 HOH HOH A . P 5 HOH 42 422 422 HOH HOH A . P 5 HOH 43 424 424 HOH HOH A . P 5 HOH 44 435 435 HOH HOH A . P 5 HOH 45 436 436 HOH HOH A . Q 5 HOH 1 301 301 HOH HOH B . Q 5 HOH 2 302 302 HOH HOH B . Q 5 HOH 3 303 303 HOH HOH B . Q 5 HOH 4 304 304 HOH HOH B . Q 5 HOH 5 305 305 HOH HOH B . Q 5 HOH 6 306 306 HOH HOH B . Q 5 HOH 7 307 307 HOH HOH B . Q 5 HOH 8 308 308 HOH HOH B . Q 5 HOH 9 309 309 HOH HOH B . Q 5 HOH 10 312 312 HOH HOH B . Q 5 HOH 11 313 313 HOH HOH B . Q 5 HOH 12 314 314 HOH HOH B . Q 5 HOH 13 315 315 HOH HOH B . Q 5 HOH 14 319 319 HOH HOH B . Q 5 HOH 15 320 320 HOH HOH B . Q 5 HOH 16 321 321 HOH HOH B . Q 5 HOH 17 322 322 HOH HOH B . Q 5 HOH 18 323 323 HOH HOH B . Q 5 HOH 19 328 328 HOH HOH B . Q 5 HOH 20 330 330 HOH HOH B . Q 5 HOH 21 331 331 HOH HOH B . Q 5 HOH 22 334 334 HOH HOH B . Q 5 HOH 23 335 335 HOH HOH B . Q 5 HOH 24 336 336 HOH HOH B . Q 5 HOH 25 337 337 HOH HOH B . Q 5 HOH 26 338 338 HOH HOH B . Q 5 HOH 27 340 340 HOH HOH B . Q 5 HOH 28 346 346 HOH HOH B . Q 5 HOH 29 348 348 HOH HOH B . Q 5 HOH 30 349 349 HOH HOH B . Q 5 HOH 31 350 350 HOH HOH B . Q 5 HOH 32 351 351 HOH HOH B . Q 5 HOH 33 352 352 HOH HOH B . Q 5 HOH 34 356 356 HOH HOH B . Q 5 HOH 35 357 357 HOH HOH B . Q 5 HOH 36 358 358 HOH HOH B . Q 5 HOH 37 359 359 HOH HOH B . Q 5 HOH 38 360 360 HOH HOH B . Q 5 HOH 39 362 362 HOH HOH B . Q 5 HOH 40 376 376 HOH HOH B . Q 5 HOH 41 377 377 HOH HOH B . Q 5 HOH 42 378 378 HOH HOH B . Q 5 HOH 43 379 379 HOH HOH B . Q 5 HOH 44 380 380 HOH HOH B . Q 5 HOH 45 381 381 HOH HOH B . Q 5 HOH 46 382 382 HOH HOH B . Q 5 HOH 47 383 383 HOH HOH B . Q 5 HOH 48 384 384 HOH HOH B . Q 5 HOH 49 385 385 HOH HOH B . Q 5 HOH 50 386 386 HOH HOH B . Q 5 HOH 51 387 387 HOH HOH B . Q 5 HOH 52 388 388 HOH HOH B . Q 5 HOH 53 389 389 HOH HOH B . Q 5 HOH 54 390 390 HOH HOH B . Q 5 HOH 55 391 391 HOH HOH B . Q 5 HOH 56 392 392 HOH HOH B . Q 5 HOH 57 393 393 HOH HOH B . Q 5 HOH 58 394 394 HOH HOH B . Q 5 HOH 59 395 395 HOH HOH B . Q 5 HOH 60 396 396 HOH HOH B . Q 5 HOH 61 397 397 HOH HOH B . Q 5 HOH 62 398 398 HOH HOH B . Q 5 HOH 63 400 400 HOH HOH B . Q 5 HOH 64 401 401 HOH HOH B . Q 5 HOH 65 402 402 HOH HOH B . Q 5 HOH 66 403 403 HOH HOH B . Q 5 HOH 67 404 404 HOH HOH B . Q 5 HOH 68 405 405 HOH HOH B . Q 5 HOH 69 406 406 HOH HOH B . Q 5 HOH 70 407 407 HOH HOH B . Q 5 HOH 71 408 408 HOH HOH B . Q 5 HOH 72 409 409 HOH HOH B . Q 5 HOH 73 410 410 HOH HOH B . Q 5 HOH 74 411 411 HOH HOH B . Q 5 HOH 75 413 413 HOH HOH B . Q 5 HOH 76 415 415 HOH HOH B . Q 5 HOH 77 416 416 HOH HOH B . Q 5 HOH 78 417 417 HOH HOH B . Q 5 HOH 79 418 418 HOH HOH B . Q 5 HOH 80 423 423 HOH HOH B . Q 5 HOH 81 425 425 HOH HOH B . Q 5 HOH 82 426 426 HOH HOH B . Q 5 HOH 83 427 427 HOH HOH B . Q 5 HOH 84 428 428 HOH HOH B . Q 5 HOH 85 429 429 HOH HOH B . Q 5 HOH 86 430 430 HOH HOH B . Q 5 HOH 87 431 431 HOH HOH B . Q 5 HOH 88 432 432 HOH HOH B . Q 5 HOH 89 433 433 HOH HOH B . Q 5 HOH 90 434 434 HOH HOH B . Q 5 HOH 91 437 437 HOH HOH B . Q 5 HOH 92 438 438 HOH HOH B . Q 5 HOH 93 439 439 HOH HOH B . Q 5 HOH 94 440 440 HOH HOH B . Q 5 HOH 95 442 442 HOH HOH B . Q 5 HOH 96 443 443 HOH HOH B . Q 5 HOH 97 444 444 HOH HOH B . Q 5 HOH 98 445 445 HOH HOH B . Q 5 HOH 99 446 446 HOH HOH B . Q 5 HOH 100 447 447 HOH HOH B . Q 5 HOH 101 448 448 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 202 ? CG ? A ARG 7 CG 2 1 Y 1 A ARG 202 ? CD ? A ARG 7 CD 3 1 Y 1 A ARG 202 ? NE ? A ARG 7 NE 4 1 Y 1 A ARG 202 ? CZ ? A ARG 7 CZ 5 1 Y 1 A ARG 202 ? NH1 ? A ARG 7 NH1 6 1 Y 1 A ARG 202 ? NH2 ? A ARG 7 NH2 7 1 Y 1 A LYS 245 ? CG ? A LYS 50 CG 8 1 Y 1 A LYS 245 ? CD ? A LYS 50 CD 9 1 Y 1 A LYS 245 ? CE ? A LYS 50 CE 10 1 Y 1 A LYS 245 ? NZ ? A LYS 50 NZ 11 1 Y 1 A LYS 291 ? CG ? A LYS 96 CG 12 1 Y 1 A LYS 291 ? CD ? A LYS 96 CD 13 1 Y 1 A LYS 291 ? CE ? A LYS 96 CE 14 1 Y 1 A LYS 291 ? NZ ? A LYS 96 NZ 15 1 Y 1 B U 43 ? N1 ? B U 43 N1 16 1 Y 1 B U 43 ? C2 ? B U 43 C2 17 1 Y 1 B U 43 ? O2 ? B U 43 O2 18 1 Y 1 B U 43 ? N3 ? B U 43 N3 19 1 Y 1 B U 43 ? C4 ? B U 43 C4 20 1 Y 1 B U 43 ? O4 ? B U 43 O4 21 1 Y 1 B U 43 ? C5 ? B U 43 C5 22 1 Y 1 B U 43 ? C6 ? B U 43 C6 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 REFMAC 5.4.0067 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 # _cell.entry_id 3EGZ _cell.length_a 120.835 _cell.length_b 120.835 _cell.length_c 55.279 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EGZ _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3EGZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.21 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.3 mM RNA, 0.33 mM selenomethionine labeled U1A-RBD double mutant, 0.5 mM chlorotetracycline, 50 mM Tris pH 7.5, 5 mM MgCl2, 0.25 mM spermine; 1uL macromolecular complex:1 uL reservoir; 50 mM HEPES-KOH pH 7.0, 20 mM MGCl2, 12.5-15% PEG 8000; cryo 30% glycerol, 50 mM HEPES-KOH pH 7.0, 20 mM MGCl2, 15% PEG 8000, 0.5 mM spermine, 0.5 mM chlorotetracycline, VAPOR DIFFUSION, SITTING DROP, temperature 296K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 spermine ? ? ? 1 3 1 HEPES-KOH ? ? ? 1 4 1 'PEG 8000' ? ? ? 1 5 1 glycerol ? ? ? 1 6 2 MgCl2 ? ? ? 1 7 2 'PEG 8000' ? ? ? 1 8 2 HEPES-KOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-02-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'Double crystal, Si111' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9570 1.0 2 0.9797 1.0 3 0.9795 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9570,0.9797,0.9795 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 # _reflns.entry_id 3EGZ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 29.31 _reflns.number_all ? _reflns.number_obs 21415 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.008 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 37.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.532 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 9.8 _reflns_shell.number_unique_all 2156 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3EGZ _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 29.31 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.800 _refine.ls_number_reflns_obs 21171 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.260 _refine.ls_percent_reflns_R_free 10.200 _refine.ls_number_reflns_R_free 2156 _refine.B_iso_mean 50.610 _refine.aniso_B[1][1] 1.120 _refine.aniso_B[2][2] 1.120 _refine.aniso_B[3][3] -2.240 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.pdbx_overall_ESU_R 0.235 _refine.pdbx_overall_ESU_R_Free 0.207 _refine.overall_SU_ML 0.146 _refine.overall_SU_B 5.694 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 98.97 _refine.B_iso_min 27.33 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 727 _refine_hist.pdbx_number_atoms_nucleic_acid 1380 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 2298 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 29.31 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2321 0.013 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1057 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3461 1.987 2.701 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2668 1.270 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 90 6.360 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33 32.527 23.636 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 140 15.349 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 15.365 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 442 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1511 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 297 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 455 0.780 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 181 0.143 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 735 1.519 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1866 2.081 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 2726 3.276 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.198 _refine_ls_shell.d_res_low 2.255 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.100 _refine_ls_shell.number_reflns_R_work 1347 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.335 _refine_ls_shell.R_factor_R_free 0.434 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 158 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1505 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EGZ _struct.title 'Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EGZ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'tetracycline, aptamer, riboswitch, antibiotic, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 5 ? Q N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SNRPA_HUMAN P09012 1 ;MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMK ; 1 ? 2 PDB 3EGZ 3EGZ 2 GAGGGAGAGGUGAAGAAUACGACCACCUAGGUACCAUUGCACUCCGGUACCUAAAACAUACCCUC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EGZ A 1 ? 98 ? P09012 1 ? 98 ? 196 293 2 2 3EGZ B 1 ? 65 ? 3EGZ 1 ? 65 ? 1 65 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EGZ HIS A 31 ? UNP P09012 TYR 31 'engineered mutation' 226 1 1 3EGZ ARG A 36 ? UNP P09012 GLN 36 'engineered mutation' 231 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 20160 ? 1 MORE -383 ? 1 'SSA (A^2)' 54890 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 120.8350000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0.0000000000 -1.0000000000 0.0000000000 60.4175000000 1.0000000000 0.0000000000 0.0000000000 60.4175000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0.0000000000 1.0000000000 0.0000000000 -60.4175000000 -1.0000000000 0.0000000000 0.0000000000 60.4175000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 22 ? SER A 35 ? LYS A 217 SER A 230 1 ? 14 HELX_P HELX_P2 2 ARG A 36 ? GLY A 38 ? ARG A 231 GLY A 233 5 ? 3 HELX_P HELX_P3 3 GLU A 61 ? GLN A 73 ? GLU A 256 GLN A 268 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 50 C ? ? ? 1_555 A MSE 51 N ? ? A LYS 245 A MSE 246 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale both ? A MSE 51 C ? ? ? 1_555 A ARG 52 N ? ? A MSE 246 A ARG 247 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale3 covale both ? A SER 71 C ? ? ? 1_555 A MSE 72 N ? ? A SER 266 A MSE 267 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 72 C ? ? ? 1_555 A GLN 73 N ? ? A MSE 267 A GLN 268 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A PRO 81 C ? ? ? 1_555 A MSE 82 N ? ? A PRO 276 A MSE 277 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A MSE 82 C ? ? ? 1_555 A ARG 83 N ? ? A MSE 277 A ARG 278 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? B A 8 OP1 ? ? ? 1_555 F MG . MG ? ? B A 8 B MG 502 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc2 metalc ? ? B U 11 OP1 ? ? ? 1_555 I MG . MG ? ? B U 11 B MG 505 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc3 metalc ? ? B A 13 OP2 ? ? ? 1_555 H MG . MG ? ? B A 13 B MG 504 1_555 ? ? ? ? ? ? ? 1.931 ? ? metalc4 metalc ? ? B G 15 OP2 ? ? ? 1_555 G MG . MG ? ? B G 15 B MG 503 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc5 metalc ? ? B G 21 OP2 ? ? ? 1_555 O MG . MG ? ? B G 21 B MG 512 1_555 ? ? ? ? ? ? ? 1.977 ? ? metalc6 metalc ? ? B G 30 N7 ? ? ? 1_555 N MG . MG ? ? B G 30 B MG 511 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc7 metalc ? ? B U 37 O4 ? ? ? 1_555 M MG . MG ? ? B U 37 B MG 509 1_555 ? ? ? ? ? ? ? 2.741 ? ? metalc8 metalc ? ? B A 54 OP1 ? ? ? 1_555 J MG . MG ? ? B A 54 B MG 506 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc9 metalc ? ? B A 55 OP2 ? ? ? 1_555 J MG . MG ? ? B A 55 B MG 506 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc10 metalc ? ? B C 57 OP2 ? ? ? 1_555 K MG . MG ? ? B C 57 B MG 507 1_555 ? ? ? ? ? ? ? 2.326 ? ? metalc11 metalc ? ? Q HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 301 B MG 501 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc12 metalc ? ? Q HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 302 B MG 501 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc13 metalc ? ? Q HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 303 B MG 501 1_555 ? ? ? ? ? ? ? 2.198 ? ? metalc14 metalc ? ? Q HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 304 B MG 501 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc15 metalc ? ? Q HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 305 B MG 501 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc16 metalc ? ? Q HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 306 B MG 501 1_555 ? ? ? ? ? ? ? 2.161 ? ? metalc17 metalc ? ? Q HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 312 B MG 502 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc18 metalc ? ? Q HOH . O ? ? ? 1_555 J MG . MG ? ? B HOH 313 B MG 506 1_555 ? ? ? ? ? ? ? 2.309 ? ? metalc19 metalc ? ? Q HOH . O ? ? ? 1_555 K MG . MG ? ? B HOH 314 B MG 507 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc20 metalc ? ? Q HOH . O ? ? ? 1_555 K MG . MG ? ? B HOH 315 B MG 507 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc21 metalc ? ? Q HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 320 B MG 502 1_555 ? ? ? ? ? ? ? 1.965 ? ? metalc22 metalc ? ? Q HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 321 B MG 502 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc23 metalc ? ? Q HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 322 B MG 502 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc24 metalc ? ? Q HOH . O ? ? ? 1_555 J MG . MG ? ? B HOH 323 B MG 506 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc25 metalc ? ? Q HOH . O ? ? ? 1_555 I MG . MG ? ? B HOH 334 B MG 505 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc26 metalc ? ? Q HOH . O ? ? ? 1_555 K MG . MG ? ? B HOH 335 B MG 507 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc27 metalc ? ? Q HOH . O ? ? ? 1_555 L MG . MG ? ? B HOH 337 B MG 508 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc28 metalc ? ? Q HOH . O ? ? ? 1_555 L MG . MG ? ? B HOH 338 B MG 508 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc29 metalc ? ? Q HOH . O ? ? ? 1_555 M MG . MG ? ? B HOH 340 B MG 509 1_555 ? ? ? ? ? ? ? 2.880 ? ? metalc30 metalc ? ? Q HOH . O ? ? ? 1_555 L MG . MG ? ? B HOH 349 B MG 508 1_555 ? ? ? ? ? ? ? 2.269 ? ? metalc31 metalc ? ? Q HOH . O ? ? ? 1_555 N MG . MG ? ? B HOH 389 B MG 511 1_555 ? ? ? ? ? ? ? 2.803 ? ? metalc32 metalc ? ? Q HOH . O ? ? ? 1_555 H MG . MG ? ? B HOH 409 B MG 504 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc33 metalc ? ? Q HOH . O ? ? ? 1_555 J MG . MG ? ? B HOH 427 B MG 506 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc34 metalc ? ? Q HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 429 B MG 503 1_555 ? ? ? ? ? ? ? 1.955 ? ? metalc35 metalc ? ? Q HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 430 B MG 503 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc36 metalc ? ? Q HOH . O ? ? ? 1_555 O MG . MG ? ? B HOH 438 B MG 512 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc37 metalc ? ? Q HOH . O ? ? ? 1_555 O MG . MG ? ? B HOH 439 B MG 512 1_555 ? ? ? ? ? ? ? 1.980 ? ? metalc38 metalc ? ? Q HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 443 B MG 503 1_555 ? ? ? ? ? ? ? 1.821 ? ? metalc39 metalc ? ? O MG . MG ? ? ? 1_555 D CTC . O11 ? ? B MG 512 B CTC 601 1_555 ? ? ? ? ? ? ? 2.003 ? ? metalc40 metalc ? ? O MG . MG ? ? ? 1_555 D CTC . O12 ? ? B MG 512 B CTC 601 1_555 ? ? ? ? ? ? ? 2.207 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 65 O2 ? ? B G 1 B C 65 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? B A 2 N1 ? ? ? 1_555 B U 64 N3 ? ? B A 2 B U 64 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog3 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 63 N3 ? ? B G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 63 O2 ? ? B G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 63 N4 ? ? B G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 62 N3 ? ? B G 4 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 62 O2 ? ? B G 4 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 62 N4 ? ? B G 4 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 61 N3 ? ? B G 5 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 61 O2 ? ? B G 5 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 61 N4 ? ? B G 5 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B A 6 N1 ? ? ? 1_555 B A 60 N6 ? ? B A 6 B A 60 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog13 hydrog ? ? B G 7 N1 ? ? ? 1_555 B U 59 O4 ? ? B G 7 B U 59 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog14 hydrog ? ? B A 8 N1 ? ? ? 1_555 B A 56 N6 ? ? B A 8 B A 56 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog15 hydrog ? ? B A 8 N6 ? ? ? 1_555 B A 56 N7 ? ? B A 8 B A 56 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog16 hydrog ? ? B A 8 N1 ? ? ? 1_555 B C 57 N4 ? ? B A 8 B C 57 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog17 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 27 N3 ? ? B G 9 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 27 O2 ? ? B G 9 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 27 N4 ? ? B G 9 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 26 N3 ? ? B G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 26 O2 ? ? B G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 26 N4 ? ? B G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B U 11 N3 ? ? ? 1_555 B A 25 N1 ? ? B U 11 B A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B U 11 O4 ? ? ? 1_555 B A 25 N6 ? ? B U 11 B A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 24 N3 ? ? B G 12 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 24 O2 ? ? B G 12 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 24 N4 ? ? B G 12 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B A 13 N1 ? ? ? 1_555 B C 23 N4 ? ? B A 13 B C 23 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog29 hydrog ? ? B A 19 N1 ? ? ? 1_555 B A 56 N6 ? ? B A 19 B A 56 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog30 hydrog ? ? B A 19 N6 ? ? ? 1_555 B A 56 N1 ? ? B A 19 B A 56 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog31 hydrog ? ? B C 20 N4 ? ? ? 1_555 B C 57 O2 ? ? B C 20 B C 57 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog32 hydrog ? ? B C 20 O2 ? ? ? 1_555 B C 57 N4 ? ? B C 20 B C 57 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog33 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 21 B C 57 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog34 hydrog ? ? B G 21 N7 ? ? ? 1_555 B A 58 N6 ? ? B G 21 B A 58 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog35 hydrog ? ? B U 28 N3 ? ? ? 1_555 B A 53 N1 ? ? B U 28 B A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B U 28 O4 ? ? ? 1_555 B A 53 N6 ? ? B U 28 B A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B A 29 N1 ? ? ? 1_555 B U 52 N3 ? ? B A 29 B U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B A 29 N6 ? ? ? 1_555 B U 52 O4 ? ? B A 29 B U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 30 N1 ? ? ? 1_555 B C 51 N3 ? ? B G 30 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B G 30 N2 ? ? ? 1_555 B C 51 O2 ? ? B G 30 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 30 O6 ? ? ? 1_555 B C 51 N4 ? ? B G 30 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 31 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 31 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 31 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 31 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 31 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 31 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B U 32 N3 ? ? ? 1_555 B A 49 N1 ? ? B U 32 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B U 32 O4 ? ? ? 1_555 B A 49 N6 ? ? B U 32 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B A 33 N1 ? ? ? 1_555 B U 48 N3 ? ? B A 33 B U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B A 33 N6 ? ? ? 1_555 B U 48 O4 ? ? B A 33 B U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 34 N3 ? ? ? 1_555 B G 47 N1 ? ? B C 34 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B C 34 N4 ? ? ? 1_555 B G 47 O6 ? ? B C 34 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B C 34 O2 ? ? ? 1_555 B G 47 N2 ? ? B C 34 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 35 N3 ? ? ? 1_555 B G 46 N1 ? ? B C 35 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 35 N4 ? ? ? 1_555 B G 46 O6 ? ? B C 35 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 35 O2 ? ? ? 1_555 B G 46 N2 ? ? B C 35 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B A 8 ? B A 8 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 312 ? 1_555 87.1 ? 2 OP1 ? B A 8 ? B A 8 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 320 ? 1_555 89.1 ? 3 O ? Q HOH . ? B HOH 312 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 320 ? 1_555 154.4 ? 4 OP1 ? B A 8 ? B A 8 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 321 ? 1_555 77.9 ? 5 O ? Q HOH . ? B HOH 312 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 321 ? 1_555 79.3 ? 6 O ? Q HOH . ? B HOH 320 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 321 ? 1_555 75.2 ? 7 OP1 ? B A 8 ? B A 8 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 322 ? 1_555 165.7 ? 8 O ? Q HOH . ? B HOH 312 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 322 ? 1_555 89.0 ? 9 O ? Q HOH . ? B HOH 320 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 322 ? 1_555 88.5 ? 10 O ? Q HOH . ? B HOH 321 ? 1_555 MG ? F MG . ? B MG 502 ? 1_555 O ? Q HOH . ? B HOH 322 ? 1_555 87.8 ? 11 OP1 ? B U 11 ? B U 11 ? 1_555 MG ? I MG . ? B MG 505 ? 1_555 O ? Q HOH . ? B HOH 334 ? 1_555 66.1 ? 12 OP2 ? B A 13 ? B A 13 ? 1_555 MG ? H MG . ? B MG 504 ? 1_555 O ? Q HOH . ? B HOH 409 ? 1_555 92.0 ? 13 OP2 ? B G 15 ? B G 15 ? 1_555 MG ? G MG . ? B MG 503 ? 1_555 O ? Q HOH . ? B HOH 429 ? 1_555 75.7 ? 14 OP2 ? B G 15 ? B G 15 ? 1_555 MG ? G MG . ? B MG 503 ? 1_555 O ? Q HOH . ? B HOH 430 ? 1_555 108.7 ? 15 O ? Q HOH . ? B HOH 429 ? 1_555 MG ? G MG . ? B MG 503 ? 1_555 O ? Q HOH . ? B HOH 430 ? 1_555 155.7 ? 16 OP2 ? B G 15 ? B G 15 ? 1_555 MG ? G MG . ? B MG 503 ? 1_555 O ? Q HOH . ? B HOH 443 ? 1_555 161.6 ? 17 O ? Q HOH . ? B HOH 429 ? 1_555 MG ? G MG . ? B MG 503 ? 1_555 O ? Q HOH . ? B HOH 443 ? 1_555 90.9 ? 18 O ? Q HOH . ? B HOH 430 ? 1_555 MG ? G MG . ? B MG 503 ? 1_555 O ? Q HOH . ? B HOH 443 ? 1_555 78.5 ? 19 OP2 ? B G 21 ? B G 21 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O ? Q HOH . ? B HOH 438 ? 1_555 100.3 ? 20 OP2 ? B G 21 ? B G 21 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O ? Q HOH . ? B HOH 439 ? 1_555 108.3 ? 21 O ? Q HOH . ? B HOH 438 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O ? Q HOH . ? B HOH 439 ? 1_555 78.3 ? 22 OP2 ? B G 21 ? B G 21 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O11 ? D CTC . ? B CTC 601 ? 1_555 93.8 ? 23 O ? Q HOH . ? B HOH 438 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O11 ? D CTC . ? B CTC 601 ? 1_555 84.7 ? 24 O ? Q HOH . ? B HOH 439 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O11 ? D CTC . ? B CTC 601 ? 1_555 154.1 ? 25 OP2 ? B G 21 ? B G 21 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O12 ? D CTC . ? B CTC 601 ? 1_555 163.0 ? 26 O ? Q HOH . ? B HOH 438 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O12 ? D CTC . ? B CTC 601 ? 1_555 84.1 ? 27 O ? Q HOH . ? B HOH 439 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O12 ? D CTC . ? B CTC 601 ? 1_555 88.7 ? 28 O11 ? D CTC . ? B CTC 601 ? 1_555 MG ? O MG . ? B MG 512 ? 1_555 O12 ? D CTC . ? B CTC 601 ? 1_555 70.0 ? 29 N7 ? B G 30 ? B G 30 ? 1_555 MG ? N MG . ? B MG 511 ? 1_555 O ? Q HOH . ? B HOH 389 ? 1_555 118.4 ? 30 O4 ? B U 37 ? B U 37 ? 1_555 MG ? M MG . ? B MG 509 ? 1_555 O ? Q HOH . ? B HOH 340 ? 1_555 89.2 ? 31 OP1 ? B A 54 ? B A 54 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 OP2 ? B A 55 ? B A 55 ? 1_555 86.4 ? 32 OP1 ? B A 54 ? B A 54 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 313 ? 1_555 91.7 ? 33 OP2 ? B A 55 ? B A 55 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 313 ? 1_555 166.2 ? 34 OP1 ? B A 54 ? B A 54 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 323 ? 1_555 87.3 ? 35 OP2 ? B A 55 ? B A 55 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 323 ? 1_555 97.6 ? 36 O ? Q HOH . ? B HOH 313 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 323 ? 1_555 96.0 ? 37 OP1 ? B A 54 ? B A 54 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 427 ? 1_555 163.0 ? 38 OP2 ? B A 55 ? B A 55 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 427 ? 1_555 76.6 ? 39 O ? Q HOH . ? B HOH 313 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 427 ? 1_555 105.1 ? 40 O ? Q HOH . ? B HOH 323 ? 1_555 MG ? J MG . ? B MG 506 ? 1_555 O ? Q HOH . ? B HOH 427 ? 1_555 93.2 ? 41 OP2 ? B C 57 ? B C 57 ? 1_555 MG ? K MG . ? B MG 507 ? 1_555 O ? Q HOH . ? B HOH 314 ? 1_555 80.1 ? 42 OP2 ? B C 57 ? B C 57 ? 1_555 MG ? K MG . ? B MG 507 ? 1_555 O ? Q HOH . ? B HOH 315 ? 1_555 80.0 ? 43 O ? Q HOH . ? B HOH 314 ? 1_555 MG ? K MG . ? B MG 507 ? 1_555 O ? Q HOH . ? B HOH 315 ? 1_555 71.6 ? 44 OP2 ? B C 57 ? B C 57 ? 1_555 MG ? K MG . ? B MG 507 ? 1_555 O ? Q HOH . ? B HOH 335 ? 1_555 169.8 ? 45 O ? Q HOH . ? B HOH 314 ? 1_555 MG ? K MG . ? B MG 507 ? 1_555 O ? Q HOH . ? B HOH 335 ? 1_555 100.1 ? 46 O ? Q HOH . ? B HOH 315 ? 1_555 MG ? K MG . ? B MG 507 ? 1_555 O ? Q HOH . ? B HOH 335 ? 1_555 90.4 ? 47 O ? Q HOH . ? B HOH 301 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 302 ? 1_555 102.1 ? 48 O ? Q HOH . ? B HOH 301 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 303 ? 1_555 81.1 ? 49 O ? Q HOH . ? B HOH 302 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 303 ? 1_555 115.1 ? 50 O ? Q HOH . ? B HOH 301 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 304 ? 1_555 74.0 ? 51 O ? Q HOH . ? B HOH 302 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 304 ? 1_555 161.1 ? 52 O ? Q HOH . ? B HOH 303 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 304 ? 1_555 83.0 ? 53 O ? Q HOH . ? B HOH 301 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 305 ? 1_555 160.3 ? 54 O ? Q HOH . ? B HOH 302 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 305 ? 1_555 96.6 ? 55 O ? Q HOH . ? B HOH 303 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 305 ? 1_555 96.6 ? 56 O ? Q HOH . ? B HOH 304 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 305 ? 1_555 86.3 ? 57 O ? Q HOH . ? B HOH 301 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 306 ? 1_555 92.8 ? 58 O ? Q HOH . ? B HOH 302 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 306 ? 1_555 88.2 ? 59 O ? Q HOH . ? B HOH 303 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 306 ? 1_555 156.6 ? 60 O ? Q HOH . ? B HOH 304 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 306 ? 1_555 73.7 ? 61 O ? Q HOH . ? B HOH 305 ? 1_555 MG ? E MG . ? B MG 501 ? 1_555 O ? Q HOH . ? B HOH 306 ? 1_555 81.5 ? 62 O ? Q HOH . ? B HOH 337 ? 1_555 MG ? L MG . ? B MG 508 ? 1_555 O ? Q HOH . ? B HOH 338 ? 1_555 111.3 ? 63 O ? Q HOH . ? B HOH 337 ? 1_555 MG ? L MG . ? B MG 508 ? 1_555 O ? Q HOH . ? B HOH 349 ? 1_555 173.5 ? 64 O ? Q HOH . ? B HOH 338 ? 1_555 MG ? L MG . ? B MG 508 ? 1_555 O ? Q HOH . ? B HOH 349 ? 1_555 66.6 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 51 ? . . . . MSE A 246 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 72 ? . . . . MSE A 267 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 82 ? . . . . MSE A 277 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 40 ? VAL A 45 ? ILE A 235 VAL A 240 A 2 ALA A 55 ? PHE A 59 ? ALA A 250 PHE A 254 A 3 THR A 11 ? ASN A 15 ? THR A 206 ASN A 210 A 4 ARG A 83 ? TYR A 86 ? ARG A 278 TYR A 281 B 1 PRO A 76 ? PHE A 77 ? PRO A 271 PHE A 272 B 2 LYS A 80 ? PRO A 81 ? LYS A 275 PRO A 276 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 41 ? N LEU A 236 O ILE A 58 ? O ILE A 253 A 2 3 O ALA A 55 ? O ALA A 250 N ILE A 14 ? N ILE A 209 A 3 4 N TYR A 13 ? N TYR A 208 O GLN A 85 ? O GLN A 280 B 1 2 N PHE A 77 ? N PHE A 272 O LYS A 80 ? O LYS A 275 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CTC 601 ? 11 'BINDING SITE FOR RESIDUE CTC B 601' AC2 Software B MG 501 ? 6 'BINDING SITE FOR RESIDUE MG B 501' AC3 Software B MG 502 ? 5 'BINDING SITE FOR RESIDUE MG B 502' AC4 Software B MG 503 ? 4 'BINDING SITE FOR RESIDUE MG B 503' AC5 Software B MG 504 ? 2 'BINDING SITE FOR RESIDUE MG B 504' AC6 Software B MG 505 ? 2 'BINDING SITE FOR RESIDUE MG B 505' AC7 Software B MG 506 ? 5 'BINDING SITE FOR RESIDUE MG B 506' AC8 Software B MG 507 ? 4 'BINDING SITE FOR RESIDUE MG B 507' AC9 Software B MG 508 ? 3 'BINDING SITE FOR RESIDUE MG B 508' BC1 Software B MG 509 ? 2 'BINDING SITE FOR RESIDUE MG B 509' BC2 Software B MG 511 ? 3 'BINDING SITE FOR RESIDUE MG B 511' BC3 Software B MG 512 ? 4 'BINDING SITE FOR RESIDUE MG B 512' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 G B 7 ? G B 7 . ? 1_555 ? 2 AC1 11 G B 15 ? G B 15 . ? 1_555 ? 3 AC1 11 U B 18 ? U B 18 . ? 1_555 ? 4 AC1 11 G B 21 ? G B 21 . ? 1_555 ? 5 AC1 11 A B 22 ? A B 22 . ? 1_555 ? 6 AC1 11 U B 59 ? U B 59 . ? 1_555 ? 7 AC1 11 A B 60 ? A B 60 . ? 1_555 ? 8 AC1 11 C B 61 ? C B 61 . ? 1_555 ? 9 AC1 11 HOH Q . ? HOH B 438 . ? 1_555 ? 10 AC1 11 HOH Q . ? HOH B 439 . ? 1_555 ? 11 AC1 11 MG O . ? MG B 512 . ? 1_555 ? 12 AC2 6 HOH Q . ? HOH B 301 . ? 1_555 ? 13 AC2 6 HOH Q . ? HOH B 302 . ? 1_555 ? 14 AC2 6 HOH Q . ? HOH B 303 . ? 1_555 ? 15 AC2 6 HOH Q . ? HOH B 304 . ? 1_555 ? 16 AC2 6 HOH Q . ? HOH B 305 . ? 1_555 ? 17 AC2 6 HOH Q . ? HOH B 306 . ? 1_555 ? 18 AC3 5 A B 8 ? A B 8 . ? 1_555 ? 19 AC3 5 HOH Q . ? HOH B 312 . ? 1_555 ? 20 AC3 5 HOH Q . ? HOH B 320 . ? 1_555 ? 21 AC3 5 HOH Q . ? HOH B 321 . ? 1_555 ? 22 AC3 5 HOH Q . ? HOH B 322 . ? 1_555 ? 23 AC4 4 G B 15 ? G B 15 . ? 1_555 ? 24 AC4 4 HOH Q . ? HOH B 429 . ? 1_555 ? 25 AC4 4 HOH Q . ? HOH B 430 . ? 1_555 ? 26 AC4 4 HOH Q . ? HOH B 443 . ? 1_555 ? 27 AC5 2 A B 13 ? A B 13 . ? 1_555 ? 28 AC5 2 HOH Q . ? HOH B 409 . ? 1_555 ? 29 AC6 2 U B 11 ? U B 11 . ? 1_555 ? 30 AC6 2 HOH Q . ? HOH B 334 . ? 1_555 ? 31 AC7 5 A B 54 ? A B 54 . ? 1_555 ? 32 AC7 5 A B 55 ? A B 55 . ? 1_555 ? 33 AC7 5 HOH Q . ? HOH B 313 . ? 1_555 ? 34 AC7 5 HOH Q . ? HOH B 323 . ? 1_555 ? 35 AC7 5 HOH Q . ? HOH B 427 . ? 1_555 ? 36 AC8 4 C B 57 ? C B 57 . ? 1_555 ? 37 AC8 4 HOH Q . ? HOH B 314 . ? 1_555 ? 38 AC8 4 HOH Q . ? HOH B 315 . ? 1_555 ? 39 AC8 4 HOH Q . ? HOH B 335 . ? 1_555 ? 40 AC9 3 HOH Q . ? HOH B 337 . ? 1_555 ? 41 AC9 3 HOH Q . ? HOH B 338 . ? 1_555 ? 42 AC9 3 HOH Q . ? HOH B 349 . ? 1_555 ? 43 BC1 2 U B 37 ? U B 37 . ? 1_555 ? 44 BC1 2 HOH Q . ? HOH B 340 . ? 1_555 ? 45 BC2 3 A B 29 ? A B 29 . ? 1_555 ? 46 BC2 3 G B 30 ? G B 30 . ? 1_555 ? 47 BC2 3 HOH Q . ? HOH B 389 . ? 1_555 ? 48 BC3 4 G B 21 ? G B 21 . ? 1_555 ? 49 BC3 4 HOH Q . ? HOH B 438 . ? 1_555 ? 50 BC3 4 HOH Q . ? HOH B 439 . ? 1_555 ? 51 BC3 4 CTC D . ? CTC B 601 . ? 1_555 ? # _pdbx_entry_details.entry_id 3EGZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG2 A THR 261 ? ? NH1 A ARG 265 ? ? 2.07 2 1 OP2 B G 9 ? ? O B HOH 313 ? ? 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P B G 1 ? ? OP3 B G 1 ? ? 1.483 1.607 -0.124 0.012 N 2 1 "O5'" B A 17 ? ? "C5'" B A 17 ? ? 1.355 1.420 -0.065 0.009 N 3 1 "O5'" B G 31 ? ? "C5'" B G 31 ? ? 1.360 1.420 -0.060 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 278 ? ? CZ A ARG 278 ? ? NH2 A ARG 278 ? ? 116.36 120.30 -3.94 0.50 N 2 1 OP1 B G 1 ? ? P B G 1 ? ? OP2 B G 1 ? ? 106.04 119.60 -13.56 1.50 N 3 1 "C1'" B G 1 ? ? "O4'" B G 1 ? ? "C4'" B G 1 ? ? 105.43 109.70 -4.27 0.70 N 4 1 "C1'" B A 2 ? ? "O4'" B A 2 ? ? "C4'" B A 2 ? ? 104.67 109.70 -5.03 0.70 N 5 1 "C4'" B A 2 ? ? "C3'" B A 2 ? ? "C2'" B A 2 ? ? 96.27 102.60 -6.33 1.00 N 6 1 "O4'" B A 2 ? ? "C1'" B A 2 ? ? "C2'" B A 2 ? ? 97.82 105.80 -7.98 1.00 N 7 1 "C3'" B G 3 ? ? "C2'" B G 3 ? ? "C1'" B G 3 ? ? 94.14 101.30 -7.16 0.70 N 8 1 N9 B G 3 ? ? "C1'" B G 3 ? ? "C2'" B G 3 ? ? 102.93 112.00 -9.07 1.10 N 9 1 "O4'" B A 8 ? ? "C1'" B A 8 ? ? N9 B A 8 ? ? 102.64 108.20 -5.56 0.80 N 10 1 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 112.91 108.50 4.41 0.70 N 11 1 "O5'" B A 17 ? ? "C5'" B A 17 ? ? "C4'" B A 17 ? ? 102.84 109.40 -6.56 0.80 N 12 1 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.76 108.50 4.26 0.70 N 13 1 "C5'" B U 18 ? ? "C4'" B U 18 ? ? "C3'" B U 18 ? ? 105.14 115.20 -10.06 1.40 N 14 1 "C1'" B U 18 ? ? "O4'" B U 18 ? ? "C4'" B U 18 ? ? 101.43 109.70 -8.27 0.70 N 15 1 "C4'" B U 18 ? ? "C3'" B U 18 ? ? "C2'" B U 18 ? ? 89.52 102.60 -13.08 1.00 N 16 1 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 114.57 108.50 6.07 0.70 N 17 1 "O5'" B G 31 ? ? P B G 31 ? ? OP2 B G 31 ? ? 99.68 105.70 -6.02 0.90 N 18 1 "O4'" B G 31 ? ? "C1'" B G 31 ? ? N9 B G 31 ? ? 102.38 108.20 -5.82 0.80 N 19 1 "O4'" B G 39 ? ? "C1'" B G 39 ? ? N9 B G 39 ? ? 115.22 108.50 6.72 0.70 N 20 1 "O4'" B C 40 ? ? "C1'" B C 40 ? ? N1 B C 40 ? ? 115.59 108.50 7.09 0.70 N 21 1 "C3'" B C 44 ? ? "C2'" B C 44 ? ? "C1'" B C 44 ? ? 95.41 101.30 -5.89 0.70 N 22 1 "O4'" B C 50 ? ? "C1'" B C 50 ? ? N1 B C 50 ? ? 112.72 108.50 4.22 0.70 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 274 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 77.71 _pdbx_validate_torsion.psi -2.89 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 51 A MSE 246 ? MET SELENOMETHIONINE 2 A MSE 72 A MSE 267 ? MET SELENOMETHIONINE 3 A MSE 82 A MSE 277 ? MET SELENOMETHIONINE # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'OUTSIDE BINDER' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 510 ? C MG . 2 1 B MG 505 ? I MG . 3 1 A HOH 327 ? P HOH . 4 1 B HOH 434 ? Q HOH . # _phasing.method MAD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 196 ? A MSE 1 2 1 Y 1 A ALA 197 ? A ALA 2 3 1 Y 1 A VAL 198 ? A VAL 3 4 1 Y 1 A PRO 199 ? A PRO 4 5 1 Y 1 A GLU 200 ? A GLU 5 6 1 Y 1 A MSE 292 ? A MSE 97 7 1 Y 1 A LYS 293 ? A LYS 98 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CTC C1 C N N 146 CTC O1 O N N 147 CTC C2 C N N 148 CTC "C2'" C N N 149 CTC "O2'" O N N 150 CTC "N2'" N N N 151 CTC C3 C N N 152 CTC O3 O N N 153 CTC C4 C N S 154 CTC N4 N N N 155 CTC "C4'" C N N 156 CTC C4D C N N 157 CTC C4A C N S 158 CTC C5 C N N 159 CTC C5A C N S 160 CTC C6 C N S 161 CTC O6 O N N 162 CTC "C6'" C N N 163 CTC C6A C Y N 164 CTC C7 C Y N 165 CTC CL7 CL N N 166 CTC C8 C Y N 167 CTC C9 C Y N 168 CTC C10 C Y N 169 CTC O10 O N N 170 CTC C6B C Y N 171 CTC C11 C N N 172 CTC O11 O N N 173 CTC C5B C N N 174 CTC C12 C N N 175 CTC O12 O N N 176 CTC C4B C N S 177 CTC O4B O N N 178 CTC HN21 H N N 179 CTC HN22 H N N 180 CTC HO3 H N N 181 CTC H4 H N N 182 CTC "H4'1" H N N 183 CTC "H4'2" H N N 184 CTC "H4'3" H N N 185 CTC H4A1 H N N 186 CTC H4A2 H N N 187 CTC H4A3 H N N 188 CTC H4A H N N 189 CTC H51 H N N 190 CTC H52 H N N 191 CTC H5A H N N 192 CTC HO6 H N N 193 CTC "H6'1" H N N 194 CTC "H6'2" H N N 195 CTC "H6'3" H N N 196 CTC H8 H N N 197 CTC H9 H N N 198 CTC HO1 H N N 199 CTC HO2 H N N 200 CTC HO4 H N N 201 G OP3 O N N 202 G P P N N 203 G OP1 O N N 204 G OP2 O N N 205 G "O5'" O N N 206 G "C5'" C N N 207 G "C4'" C N R 208 G "O4'" O N N 209 G "C3'" C N S 210 G "O3'" O N N 211 G "C2'" C N R 212 G "O2'" O N N 213 G "C1'" C N R 214 G N9 N Y N 215 G C8 C Y N 216 G N7 N Y N 217 G C5 C Y N 218 G C6 C N N 219 G O6 O N N 220 G N1 N N N 221 G C2 C N N 222 G N2 N N N 223 G N3 N N N 224 G C4 C Y N 225 G HOP3 H N N 226 G HOP2 H N N 227 G "H5'" H N N 228 G "H5''" H N N 229 G "H4'" H N N 230 G "H3'" H N N 231 G "HO3'" H N N 232 G "H2'" H N N 233 G "HO2'" H N N 234 G "H1'" H N N 235 G H8 H N N 236 G H1 H N N 237 G H21 H N N 238 G H22 H N N 239 GLN N N N N 240 GLN CA C N S 241 GLN C C N N 242 GLN O O N N 243 GLN CB C N N 244 GLN CG C N N 245 GLN CD C N N 246 GLN OE1 O N N 247 GLN NE2 N N N 248 GLN OXT O N N 249 GLN H H N N 250 GLN H2 H N N 251 GLN HA H N N 252 GLN HB2 H N N 253 GLN HB3 H N N 254 GLN HG2 H N N 255 GLN HG3 H N N 256 GLN HE21 H N N 257 GLN HE22 H N N 258 GLN HXT H N N 259 GLU N N N N 260 GLU CA C N S 261 GLU C C N N 262 GLU O O N N 263 GLU CB C N N 264 GLU CG C N N 265 GLU CD C N N 266 GLU OE1 O N N 267 GLU OE2 O N N 268 GLU OXT O N N 269 GLU H H N N 270 GLU H2 H N N 271 GLU HA H N N 272 GLU HB2 H N N 273 GLU HB3 H N N 274 GLU HG2 H N N 275 GLU HG3 H N N 276 GLU HE2 H N N 277 GLU HXT H N N 278 GLY N N N N 279 GLY CA C N N 280 GLY C C N N 281 GLY O O N N 282 GLY OXT O N N 283 GLY H H N N 284 GLY H2 H N N 285 GLY HA2 H N N 286 GLY HA3 H N N 287 GLY HXT H N N 288 HIS N N N N 289 HIS CA C N S 290 HIS C C N N 291 HIS O O N N 292 HIS CB C N N 293 HIS CG C Y N 294 HIS ND1 N Y N 295 HIS CD2 C Y N 296 HIS CE1 C Y N 297 HIS NE2 N Y N 298 HIS OXT O N N 299 HIS H H N N 300 HIS H2 H N N 301 HIS HA H N N 302 HIS HB2 H N N 303 HIS HB3 H N N 304 HIS HD1 H N N 305 HIS HD2 H N N 306 HIS HE1 H N N 307 HIS HE2 H N N 308 HIS HXT H N N 309 HOH O O N N 310 HOH H1 H N N 311 HOH H2 H N N 312 ILE N N N N 313 ILE CA C N S 314 ILE C C N N 315 ILE O O N N 316 ILE CB C N S 317 ILE CG1 C N N 318 ILE CG2 C N N 319 ILE CD1 C N N 320 ILE OXT O N N 321 ILE H H N N 322 ILE H2 H N N 323 ILE HA H N N 324 ILE HB H N N 325 ILE HG12 H N N 326 ILE HG13 H N N 327 ILE HG21 H N N 328 ILE HG22 H N N 329 ILE HG23 H N N 330 ILE HD11 H N N 331 ILE HD12 H N N 332 ILE HD13 H N N 333 ILE HXT H N N 334 LEU N N N N 335 LEU CA C N S 336 LEU C C N N 337 LEU O O N N 338 LEU CB C N N 339 LEU CG C N N 340 LEU CD1 C N N 341 LEU CD2 C N N 342 LEU OXT O N N 343 LEU H H N N 344 LEU H2 H N N 345 LEU HA H N N 346 LEU HB2 H N N 347 LEU HB3 H N N 348 LEU HG H N N 349 LEU HD11 H N N 350 LEU HD12 H N N 351 LEU HD13 H N N 352 LEU HD21 H N N 353 LEU HD22 H N N 354 LEU HD23 H N N 355 LEU HXT H N N 356 LYS N N N N 357 LYS CA C N S 358 LYS C C N N 359 LYS O O N N 360 LYS CB C N N 361 LYS CG C N N 362 LYS CD C N N 363 LYS CE C N N 364 LYS NZ N N N 365 LYS OXT O N N 366 LYS H H N N 367 LYS H2 H N N 368 LYS HA H N N 369 LYS HB2 H N N 370 LYS HB3 H N N 371 LYS HG2 H N N 372 LYS HG3 H N N 373 LYS HD2 H N N 374 LYS HD3 H N N 375 LYS HE2 H N N 376 LYS HE3 H N N 377 LYS HZ1 H N N 378 LYS HZ2 H N N 379 LYS HZ3 H N N 380 LYS HXT H N N 381 MG MG MG N N 382 MSE N N N N 383 MSE CA C N S 384 MSE C C N N 385 MSE O O N N 386 MSE OXT O N N 387 MSE CB C N N 388 MSE CG C N N 389 MSE SE SE N N 390 MSE CE C N N 391 MSE H H N N 392 MSE H2 H N N 393 MSE HA H N N 394 MSE HXT H N N 395 MSE HB2 H N N 396 MSE HB3 H N N 397 MSE HG2 H N N 398 MSE HG3 H N N 399 MSE HE1 H N N 400 MSE HE2 H N N 401 MSE HE3 H N N 402 PHE N N N N 403 PHE CA C N S 404 PHE C C N N 405 PHE O O N N 406 PHE CB C N N 407 PHE CG C Y N 408 PHE CD1 C Y N 409 PHE CD2 C Y N 410 PHE CE1 C Y N 411 PHE CE2 C Y N 412 PHE CZ C Y N 413 PHE OXT O N N 414 PHE H H N N 415 PHE H2 H N N 416 PHE HA H N N 417 PHE HB2 H N N 418 PHE HB3 H N N 419 PHE HD1 H N N 420 PHE HD2 H N N 421 PHE HE1 H N N 422 PHE HE2 H N N 423 PHE HZ H N N 424 PHE HXT H N N 425 PRO N N N N 426 PRO CA C N S 427 PRO C C N N 428 PRO O O N N 429 PRO CB C N N 430 PRO CG C N N 431 PRO CD C N N 432 PRO OXT O N N 433 PRO H H N N 434 PRO HA H N N 435 PRO HB2 H N N 436 PRO HB3 H N N 437 PRO HG2 H N N 438 PRO HG3 H N N 439 PRO HD2 H N N 440 PRO HD3 H N N 441 PRO HXT H N N 442 SER N N N N 443 SER CA C N S 444 SER C C N N 445 SER O O N N 446 SER CB C N N 447 SER OG O N N 448 SER OXT O N N 449 SER H H N N 450 SER H2 H N N 451 SER HA H N N 452 SER HB2 H N N 453 SER HB3 H N N 454 SER HG H N N 455 SER HXT H N N 456 THR N N N N 457 THR CA C N S 458 THR C C N N 459 THR O O N N 460 THR CB C N R 461 THR OG1 O N N 462 THR CG2 C N N 463 THR OXT O N N 464 THR H H N N 465 THR H2 H N N 466 THR HA H N N 467 THR HB H N N 468 THR HG1 H N N 469 THR HG21 H N N 470 THR HG22 H N N 471 THR HG23 H N N 472 THR HXT H N N 473 TYR N N N N 474 TYR CA C N S 475 TYR C C N N 476 TYR O O N N 477 TYR CB C N N 478 TYR CG C Y N 479 TYR CD1 C Y N 480 TYR CD2 C Y N 481 TYR CE1 C Y N 482 TYR CE2 C Y N 483 TYR CZ C Y N 484 TYR OH O N N 485 TYR OXT O N N 486 TYR H H N N 487 TYR H2 H N N 488 TYR HA H N N 489 TYR HB2 H N N 490 TYR HB3 H N N 491 TYR HD1 H N N 492 TYR HD2 H N N 493 TYR HE1 H N N 494 TYR HE2 H N N 495 TYR HH H N N 496 TYR HXT H N N 497 U OP3 O N N 498 U P P N N 499 U OP1 O N N 500 U OP2 O N N 501 U "O5'" O N N 502 U "C5'" C N N 503 U "C4'" C N R 504 U "O4'" O N N 505 U "C3'" C N S 506 U "O3'" O N N 507 U "C2'" C N R 508 U "O2'" O N N 509 U "C1'" C N R 510 U N1 N N N 511 U C2 C N N 512 U O2 O N N 513 U N3 N N N 514 U C4 C N N 515 U O4 O N N 516 U C5 C N N 517 U C6 C N N 518 U HOP3 H N N 519 U HOP2 H N N 520 U "H5'" H N N 521 U "H5''" H N N 522 U "H4'" H N N 523 U "H3'" H N N 524 U "HO3'" H N N 525 U "H2'" H N N 526 U "HO2'" H N N 527 U "H1'" H N N 528 U H3 H N N 529 U H5 H N N 530 U H6 H N N 531 VAL N N N N 532 VAL CA C N S 533 VAL C C N N 534 VAL O O N N 535 VAL CB C N N 536 VAL CG1 C N N 537 VAL CG2 C N N 538 VAL OXT O N N 539 VAL H H N N 540 VAL H2 H N N 541 VAL HA H N N 542 VAL HB H N N 543 VAL HG11 H N N 544 VAL HG12 H N N 545 VAL HG13 H N N 546 VAL HG21 H N N 547 VAL HG22 H N N 548 VAL HG23 H N N 549 VAL HXT H N N 550 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CTC C1 O1 doub N N 145 CTC C1 C2 sing N N 146 CTC C1 C4B sing N N 147 CTC C2 "C2'" sing N N 148 CTC C2 C3 doub N N 149 CTC "C2'" "O2'" doub N N 150 CTC "C2'" "N2'" sing N N 151 CTC "N2'" HN21 sing N N 152 CTC "N2'" HN22 sing N N 153 CTC C3 O3 sing N N 154 CTC C3 C4 sing N N 155 CTC O3 HO3 sing N N 156 CTC C4 N4 sing N N 157 CTC C4 C4A sing N N 158 CTC C4 H4 sing N N 159 CTC N4 "C4'" sing N N 160 CTC N4 C4D sing N N 161 CTC "C4'" "H4'1" sing N N 162 CTC "C4'" "H4'2" sing N N 163 CTC "C4'" "H4'3" sing N N 164 CTC C4D H4A1 sing N N 165 CTC C4D H4A2 sing N N 166 CTC C4D H4A3 sing N N 167 CTC C4A C5 sing N N 168 CTC C4A C4B sing N N 169 CTC C4A H4A sing N N 170 CTC C5 C5A sing N N 171 CTC C5 H51 sing N N 172 CTC C5 H52 sing N N 173 CTC C5A C6 sing N N 174 CTC C5A C5B sing N N 175 CTC C5A H5A sing N N 176 CTC C6 O6 sing N N 177 CTC C6 "C6'" sing N N 178 CTC C6 C6A sing N N 179 CTC O6 HO6 sing N N 180 CTC "C6'" "H6'1" sing N N 181 CTC "C6'" "H6'2" sing N N 182 CTC "C6'" "H6'3" sing N N 183 CTC C6A C7 doub Y N 184 CTC C6A C6B sing Y N 185 CTC C7 CL7 sing N N 186 CTC C7 C8 sing Y N 187 CTC C8 C9 doub Y N 188 CTC C8 H8 sing N N 189 CTC C9 C10 sing Y N 190 CTC C9 H9 sing N N 191 CTC C10 O10 sing N N 192 CTC C10 C6B doub Y N 193 CTC O10 HO1 sing N N 194 CTC C6B C11 sing N N 195 CTC C11 O11 doub N N 196 CTC C11 C5B sing N N 197 CTC C5B C12 doub N N 198 CTC C12 O12 sing N N 199 CTC C12 C4B sing N N 200 CTC O12 HO2 sing N N 201 CTC C4B O4B sing N N 202 CTC O4B HO4 sing N N 203 G OP3 P sing N N 204 G OP3 HOP3 sing N N 205 G P OP1 doub N N 206 G P OP2 sing N N 207 G P "O5'" sing N N 208 G OP2 HOP2 sing N N 209 G "O5'" "C5'" sing N N 210 G "C5'" "C4'" sing N N 211 G "C5'" "H5'" sing N N 212 G "C5'" "H5''" sing N N 213 G "C4'" "O4'" sing N N 214 G "C4'" "C3'" sing N N 215 G "C4'" "H4'" sing N N 216 G "O4'" "C1'" sing N N 217 G "C3'" "O3'" sing N N 218 G "C3'" "C2'" sing N N 219 G "C3'" "H3'" sing N N 220 G "O3'" "HO3'" sing N N 221 G "C2'" "O2'" sing N N 222 G "C2'" "C1'" sing N N 223 G "C2'" "H2'" sing N N 224 G "O2'" "HO2'" sing N N 225 G "C1'" N9 sing N N 226 G "C1'" "H1'" sing N N 227 G N9 C8 sing Y N 228 G N9 C4 sing Y N 229 G C8 N7 doub Y N 230 G C8 H8 sing N N 231 G N7 C5 sing Y N 232 G C5 C6 sing N N 233 G C5 C4 doub Y N 234 G C6 O6 doub N N 235 G C6 N1 sing N N 236 G N1 C2 sing N N 237 G N1 H1 sing N N 238 G C2 N2 sing N N 239 G C2 N3 doub N N 240 G N2 H21 sing N N 241 G N2 H22 sing N N 242 G N3 C4 sing N N 243 GLN N CA sing N N 244 GLN N H sing N N 245 GLN N H2 sing N N 246 GLN CA C sing N N 247 GLN CA CB sing N N 248 GLN CA HA sing N N 249 GLN C O doub N N 250 GLN C OXT sing N N 251 GLN CB CG sing N N 252 GLN CB HB2 sing N N 253 GLN CB HB3 sing N N 254 GLN CG CD sing N N 255 GLN CG HG2 sing N N 256 GLN CG HG3 sing N N 257 GLN CD OE1 doub N N 258 GLN CD NE2 sing N N 259 GLN NE2 HE21 sing N N 260 GLN NE2 HE22 sing N N 261 GLN OXT HXT sing N N 262 GLU N CA sing N N 263 GLU N H sing N N 264 GLU N H2 sing N N 265 GLU CA C sing N N 266 GLU CA CB sing N N 267 GLU CA HA sing N N 268 GLU C O doub N N 269 GLU C OXT sing N N 270 GLU CB CG sing N N 271 GLU CB HB2 sing N N 272 GLU CB HB3 sing N N 273 GLU CG CD sing N N 274 GLU CG HG2 sing N N 275 GLU CG HG3 sing N N 276 GLU CD OE1 doub N N 277 GLU CD OE2 sing N N 278 GLU OE2 HE2 sing N N 279 GLU OXT HXT sing N N 280 GLY N CA sing N N 281 GLY N H sing N N 282 GLY N H2 sing N N 283 GLY CA C sing N N 284 GLY CA HA2 sing N N 285 GLY CA HA3 sing N N 286 GLY C O doub N N 287 GLY C OXT sing N N 288 GLY OXT HXT sing N N 289 HIS N CA sing N N 290 HIS N H sing N N 291 HIS N H2 sing N N 292 HIS CA C sing N N 293 HIS CA CB sing N N 294 HIS CA HA sing N N 295 HIS C O doub N N 296 HIS C OXT sing N N 297 HIS CB CG sing N N 298 HIS CB HB2 sing N N 299 HIS CB HB3 sing N N 300 HIS CG ND1 sing Y N 301 HIS CG CD2 doub Y N 302 HIS ND1 CE1 doub Y N 303 HIS ND1 HD1 sing N N 304 HIS CD2 NE2 sing Y N 305 HIS CD2 HD2 sing N N 306 HIS CE1 NE2 sing Y N 307 HIS CE1 HE1 sing N N 308 HIS NE2 HE2 sing N N 309 HIS OXT HXT sing N N 310 HOH O H1 sing N N 311 HOH O H2 sing N N 312 ILE N CA sing N N 313 ILE N H sing N N 314 ILE N H2 sing N N 315 ILE CA C sing N N 316 ILE CA CB sing N N 317 ILE CA HA sing N N 318 ILE C O doub N N 319 ILE C OXT sing N N 320 ILE CB CG1 sing N N 321 ILE CB CG2 sing N N 322 ILE CB HB sing N N 323 ILE CG1 CD1 sing N N 324 ILE CG1 HG12 sing N N 325 ILE CG1 HG13 sing N N 326 ILE CG2 HG21 sing N N 327 ILE CG2 HG22 sing N N 328 ILE CG2 HG23 sing N N 329 ILE CD1 HD11 sing N N 330 ILE CD1 HD12 sing N N 331 ILE CD1 HD13 sing N N 332 ILE OXT HXT sing N N 333 LEU N CA sing N N 334 LEU N H sing N N 335 LEU N H2 sing N N 336 LEU CA C sing N N 337 LEU CA CB sing N N 338 LEU CA HA sing N N 339 LEU C O doub N N 340 LEU C OXT sing N N 341 LEU CB CG sing N N 342 LEU CB HB2 sing N N 343 LEU CB HB3 sing N N 344 LEU CG CD1 sing N N 345 LEU CG CD2 sing N N 346 LEU CG HG sing N N 347 LEU CD1 HD11 sing N N 348 LEU CD1 HD12 sing N N 349 LEU CD1 HD13 sing N N 350 LEU CD2 HD21 sing N N 351 LEU CD2 HD22 sing N N 352 LEU CD2 HD23 sing N N 353 LEU OXT HXT sing N N 354 LYS N CA sing N N 355 LYS N H sing N N 356 LYS N H2 sing N N 357 LYS CA C sing N N 358 LYS CA CB sing N N 359 LYS CA HA sing N N 360 LYS C O doub N N 361 LYS C OXT sing N N 362 LYS CB CG sing N N 363 LYS CB HB2 sing N N 364 LYS CB HB3 sing N N 365 LYS CG CD sing N N 366 LYS CG HG2 sing N N 367 LYS CG HG3 sing N N 368 LYS CD CE sing N N 369 LYS CD HD2 sing N N 370 LYS CD HD3 sing N N 371 LYS CE NZ sing N N 372 LYS CE HE2 sing N N 373 LYS CE HE3 sing N N 374 LYS NZ HZ1 sing N N 375 LYS NZ HZ2 sing N N 376 LYS NZ HZ3 sing N N 377 LYS OXT HXT sing N N 378 MSE N CA sing N N 379 MSE N H sing N N 380 MSE N H2 sing N N 381 MSE CA C sing N N 382 MSE CA CB sing N N 383 MSE CA HA sing N N 384 MSE C O doub N N 385 MSE C OXT sing N N 386 MSE OXT HXT sing N N 387 MSE CB CG sing N N 388 MSE CB HB2 sing N N 389 MSE CB HB3 sing N N 390 MSE CG SE sing N N 391 MSE CG HG2 sing N N 392 MSE CG HG3 sing N N 393 MSE SE CE sing N N 394 MSE CE HE1 sing N N 395 MSE CE HE2 sing N N 396 MSE CE HE3 sing N N 397 PHE N CA sing N N 398 PHE N H sing N N 399 PHE N H2 sing N N 400 PHE CA C sing N N 401 PHE CA CB sing N N 402 PHE CA HA sing N N 403 PHE C O doub N N 404 PHE C OXT sing N N 405 PHE CB CG sing N N 406 PHE CB HB2 sing N N 407 PHE CB HB3 sing N N 408 PHE CG CD1 doub Y N 409 PHE CG CD2 sing Y N 410 PHE CD1 CE1 sing Y N 411 PHE CD1 HD1 sing N N 412 PHE CD2 CE2 doub Y N 413 PHE CD2 HD2 sing N N 414 PHE CE1 CZ doub Y N 415 PHE CE1 HE1 sing N N 416 PHE CE2 CZ sing Y N 417 PHE CE2 HE2 sing N N 418 PHE CZ HZ sing N N 419 PHE OXT HXT sing N N 420 PRO N CA sing N N 421 PRO N CD sing N N 422 PRO N H sing N N 423 PRO CA C sing N N 424 PRO CA CB sing N N 425 PRO CA HA sing N N 426 PRO C O doub N N 427 PRO C OXT sing N N 428 PRO CB CG sing N N 429 PRO CB HB2 sing N N 430 PRO CB HB3 sing N N 431 PRO CG CD sing N N 432 PRO CG HG2 sing N N 433 PRO CG HG3 sing N N 434 PRO CD HD2 sing N N 435 PRO CD HD3 sing N N 436 PRO OXT HXT sing N N 437 SER N CA sing N N 438 SER N H sing N N 439 SER N H2 sing N N 440 SER CA C sing N N 441 SER CA CB sing N N 442 SER CA HA sing N N 443 SER C O doub N N 444 SER C OXT sing N N 445 SER CB OG sing N N 446 SER CB HB2 sing N N 447 SER CB HB3 sing N N 448 SER OG HG sing N N 449 SER OXT HXT sing N N 450 THR N CA sing N N 451 THR N H sing N N 452 THR N H2 sing N N 453 THR CA C sing N N 454 THR CA CB sing N N 455 THR CA HA sing N N 456 THR C O doub N N 457 THR C OXT sing N N 458 THR CB OG1 sing N N 459 THR CB CG2 sing N N 460 THR CB HB sing N N 461 THR OG1 HG1 sing N N 462 THR CG2 HG21 sing N N 463 THR CG2 HG22 sing N N 464 THR CG2 HG23 sing N N 465 THR OXT HXT sing N N 466 TYR N CA sing N N 467 TYR N H sing N N 468 TYR N H2 sing N N 469 TYR CA C sing N N 470 TYR CA CB sing N N 471 TYR CA HA sing N N 472 TYR C O doub N N 473 TYR C OXT sing N N 474 TYR CB CG sing N N 475 TYR CB HB2 sing N N 476 TYR CB HB3 sing N N 477 TYR CG CD1 doub Y N 478 TYR CG CD2 sing Y N 479 TYR CD1 CE1 sing Y N 480 TYR CD1 HD1 sing N N 481 TYR CD2 CE2 doub Y N 482 TYR CD2 HD2 sing N N 483 TYR CE1 CZ doub Y N 484 TYR CE1 HE1 sing N N 485 TYR CE2 CZ sing Y N 486 TYR CE2 HE2 sing N N 487 TYR CZ OH sing N N 488 TYR OH HH sing N N 489 TYR OXT HXT sing N N 490 U OP3 P sing N N 491 U OP3 HOP3 sing N N 492 U P OP1 doub N N 493 U P OP2 sing N N 494 U P "O5'" sing N N 495 U OP2 HOP2 sing N N 496 U "O5'" "C5'" sing N N 497 U "C5'" "C4'" sing N N 498 U "C5'" "H5'" sing N N 499 U "C5'" "H5''" sing N N 500 U "C4'" "O4'" sing N N 501 U "C4'" "C3'" sing N N 502 U "C4'" "H4'" sing N N 503 U "O4'" "C1'" sing N N 504 U "C3'" "O3'" sing N N 505 U "C3'" "C2'" sing N N 506 U "C3'" "H3'" sing N N 507 U "O3'" "HO3'" sing N N 508 U "C2'" "O2'" sing N N 509 U "C2'" "C1'" sing N N 510 U "C2'" "H2'" sing N N 511 U "O2'" "HO2'" sing N N 512 U "C1'" N1 sing N N 513 U "C1'" "H1'" sing N N 514 U N1 C2 sing N N 515 U N1 C6 sing N N 516 U C2 O2 doub N N 517 U C2 N3 sing N N 518 U N3 C4 sing N N 519 U N3 H3 sing N N 520 U C4 O4 doub N N 521 U C4 C5 sing N N 522 U C5 C6 doub N N 523 U C5 H5 sing N N 524 U C6 H6 sing N N 525 VAL N CA sing N N 526 VAL N H sing N N 527 VAL N H2 sing N N 528 VAL CA C sing N N 529 VAL CA CB sing N N 530 VAL CA HA sing N N 531 VAL C O doub N N 532 VAL C OXT sing N N 533 VAL CB CG1 sing N N 534 VAL CB CG2 sing N N 535 VAL CB HB sing N N 536 VAL CG1 HG11 sing N N 537 VAL CG1 HG12 sing N N 538 VAL CG1 HG13 sing N N 539 VAL CG2 HG21 sing N N 540 VAL CG2 HG22 sing N N 541 VAL CG2 HG23 sing N N 542 VAL OXT HXT sing N N 543 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3EGZ 'double helix' 3EGZ 'a-form double helix' 3EGZ 'parallel strands' 3EGZ 'hairpin loop' 3EGZ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 65 1_555 -1.552 0.223 0.097 -1.136 -15.956 23.820 1 B_G1:C65_B B 1 ? B 65 ? ? 1 1 B A 2 1_555 B U 64 1_555 -0.385 0.691 -0.066 -1.294 -20.407 30.489 2 B_A2:U64_B B 2 ? B 64 ? ? 1 1 B G 3 1_555 B C 63 1_555 -0.606 -0.257 -0.287 -2.882 -12.543 -1.222 3 B_G3:C63_B B 3 ? B 63 ? 19 1 1 B G 4 1_555 B C 62 1_555 -0.223 -0.520 0.168 -5.075 -16.490 -0.621 4 B_G4:C62_B B 4 ? B 62 ? 19 1 1 B G 5 1_555 B C 61 1_555 -0.538 -0.272 -0.404 -20.363 -21.683 -4.279 5 B_G5:C61_B B 5 ? B 61 ? 19 1 1 B A 6 1_555 B A 60 1_555 2.263 1.802 -0.335 -23.863 -18.881 -12.921 6 B_A6:A60_B B 6 ? B 60 ? ? ? 1 B G 7 1_555 B U 59 1_555 4.422 0.563 -0.123 -16.657 -8.846 -51.002 7 B_G7:U59_B B 7 ? B 59 ? ? 1 1 B G 21 1_555 B A 58 1_555 3.380 -5.687 -0.978 0.825 11.421 127.851 8 B_G21:A58_B B 21 ? B 58 ? ? ? 1 B C 20 1_555 B C 57 1_555 -2.060 -1.089 0.202 -17.508 -17.286 -176.711 9 B_C20:C57_B B 20 ? B 57 ? 15 2 1 B A 19 1_555 B A 56 1_555 -1.743 -1.440 0.092 22.767 17.587 169.692 10 B_A19:A56_B B 19 ? B 56 ? 1 2 1 B C 23 1_555 B A 13 1_555 -2.626 0.392 -0.208 29.711 -16.789 -6.220 11 B_C23:A13_B B 23 ? B 13 ? ? ? 1 B C 24 1_555 B G 12 1_555 0.374 -0.205 0.216 7.342 -15.268 -0.875 12 B_C24:G12_B B 24 ? B 12 ? 19 1 1 B A 25 1_555 B U 11 1_555 0.231 0.078 0.157 5.620 -7.569 5.949 13 B_A25:U11_B B 25 ? B 11 ? 20 1 1 B C 26 1_555 B G 10 1_555 0.077 -0.161 0.181 6.405 -12.685 0.266 14 B_C26:G10_B B 26 ? B 10 ? 19 1 1 B C 27 1_555 B G 9 1_555 0.336 -0.311 0.342 -6.530 -5.874 -2.085 15 B_C27:G9_B B 27 ? B 9 ? 19 1 1 B U 28 1_555 B A 53 1_555 -0.481 -0.182 0.142 -6.069 -9.471 5.097 16 B_U28:A53_B B 28 ? B 53 ? 20 1 1 B A 29 1_555 B U 52 1_555 -0.285 -0.051 -0.011 -1.507 -7.747 6.876 17 B_A29:U52_B B 29 ? B 52 ? 20 1 1 B G 30 1_555 B C 51 1_555 -0.251 0.023 0.252 1.127 -10.335 2.088 18 B_G30:C51_B B 30 ? B 51 ? 19 1 1 B G 31 1_555 B C 50 1_555 -0.099 -0.142 0.246 1.512 -10.564 0.308 19 B_G31:C50_B B 31 ? B 50 ? 19 1 1 B U 32 1_555 B A 49 1_555 0.017 -0.107 0.490 1.356 -12.354 4.348 20 B_U32:A49_B B 32 ? B 49 ? 20 1 1 B A 33 1_555 B U 48 1_555 0.158 -0.171 0.024 4.141 -13.218 -0.853 21 B_A33:U48_B B 33 ? B 48 ? 20 1 1 B C 34 1_555 B G 47 1_555 0.479 -0.152 0.077 6.446 -14.230 2.548 22 B_C34:G47_B B 34 ? B 47 ? 19 1 1 B C 35 1_555 B G 46 1_555 0.064 -0.226 -0.067 2.201 -7.967 -0.243 23 B_C35:G46_B B 35 ? B 46 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 65 1_555 B A 2 1_555 B U 64 1_555 0.014 -0.958 3.381 1.178 8.496 35.301 -2.729 0.142 3.075 13.761 -1.909 36.296 1 BB_G1A2:U64C65_BB B 1 ? B 65 ? B 2 ? B 64 ? 1 B A 2 1_555 B U 64 1_555 B G 3 1_555 B C 63 1_555 -0.827 -1.106 3.317 -1.643 10.523 29.639 -3.942 1.229 2.811 19.783 3.089 31.454 2 BB_A2G3:C63U64_BB B 2 ? B 64 ? B 3 ? B 63 ? 1 B G 3 1_555 B C 63 1_555 B G 4 1_555 B C 62 1_555 0.708 -2.119 3.299 -0.185 6.375 31.093 -4.984 -1.328 2.815 11.738 0.340 31.725 3 BB_G3G4:C62C63_BB B 3 ? B 63 ? B 4 ? B 62 ? 1 B G 4 1_555 B C 62 1_555 B G 5 1_555 B C 61 1_555 0.444 -2.508 3.607 8.032 14.601 33.330 -5.825 0.343 2.382 23.704 -13.039 37.158 4 BB_G4G5:C61C62_BB B 4 ? B 62 ? B 5 ? B 61 ? 1 B G 5 1_555 B C 61 1_555 B A 6 1_555 B A 60 1_555 -0.419 -1.300 3.270 3.499 6.123 40.928 -2.464 0.951 3.009 8.679 -4.960 41.505 5 BB_G5A6:A60C61_BB B 5 ? B 61 ? B 6 ? B 60 ? 1 B A 6 1_555 B A 60 1_555 B G 7 1_555 B U 59 1_555 -2.156 -1.369 3.294 4.579 16.905 39.854 -3.326 3.315 2.307 23.475 -6.358 43.389 6 BB_A6G7:U59A60_BB B 6 ? B 60 ? B 7 ? B 59 ? 1 B G 7 1_555 B U 59 1_555 B G 21 1_555 B A 58 1_555 1.641 2.850 -2.234 172.060 -28.899 -73.413 -1.613 -0.289 -2.255 14.634 87.126 -175.567 7 BB_G7G21:A58U59_BB B 7 ? B 59 ? B 21 ? B 58 ? 1 B G 21 1_555 B A 58 1_555 B C 20 1_555 B C 57 1_555 4.152 -0.426 -2.665 -4.021 9.122 167.198 -0.202 -2.083 -2.685 4.590 2.023 167.246 8 BB_G21C20:C57A58_BB B 21 ? B 58 ? B 20 ? B 57 ? 1 B C 20 1_555 B C 57 1_555 B A 19 1_555 B A 56 1_555 0.264 -0.383 -3.047 -0.931 1.113 135.058 -0.201 -0.137 -3.049 0.602 0.504 135.062 9 BB_C20A19:A56C57_BB B 20 ? B 57 ? B 19 ? B 56 ? 1 B C 23 1_555 B A 13 1_555 B C 24 1_555 B G 12 1_555 0.216 -1.277 3.801 -5.563 9.633 49.508 -2.257 -0.694 3.470 11.338 6.547 50.665 10 BB_C23C24:G12A13_BB B 23 ? B 13 ? B 24 ? B 12 ? 1 B C 24 1_555 B G 12 1_555 B A 25 1_555 B U 11 1_555 -0.637 -1.987 3.161 -4.024 8.373 28.814 -5.328 0.490 2.559 16.299 7.834 30.245 11 BB_C24A25:U11G12_BB B 24 ? B 12 ? B 25 ? B 11 ? 1 B A 25 1_555 B U 11 1_555 B C 26 1_555 B G 10 1_555 0.057 -1.678 3.229 -1.625 -0.008 31.497 -3.086 -0.403 3.223 -0.015 2.991 31.538 12 BB_A25C26:G10U11_BB B 25 ? B 11 ? B 26 ? B 10 ? 1 B C 26 1_555 B G 10 1_555 B C 27 1_555 B G 9 1_555 0.020 -1.647 3.585 -0.638 2.611 35.606 -3.093 -0.132 3.458 4.262 1.041 35.704 13 BB_C26C27:G9G10_BB B 26 ? B 10 ? B 27 ? B 9 ? 1 B C 27 1_555 B G 9 1_555 B U 28 1_555 B A 53 1_555 -1.586 -3.102 3.075 3.107 3.960 8.863 -22.209 12.653 0.990 23.312 -18.294 10.190 14 BB_C27U28:A53G9_BB B 27 ? B 9 ? B 28 ? B 53 ? 1 B U 28 1_555 B A 53 1_555 B A 29 1_555 B U 52 1_555 -0.171 -1.012 3.205 -0.227 1.946 34.734 -1.981 0.252 3.146 3.257 0.380 34.787 15 BB_U28A29:U52A53_BB B 28 ? B 53 ? B 29 ? B 52 ? 1 B A 29 1_555 B U 52 1_555 B G 30 1_555 B C 51 1_555 0.190 -1.535 3.110 -0.420 4.215 31.392 -3.528 -0.420 2.882 7.745 0.772 31.669 16 BB_A29G30:C51U52_BB B 29 ? B 52 ? B 30 ? B 51 ? 1 B G 30 1_555 B C 51 1_555 B G 31 1_555 B C 50 1_555 0.139 -2.367 3.121 0.484 7.907 26.491 -6.594 -0.191 2.332 16.784 -1.027 27.630 17 BB_G30G31:C50C51_BB B 30 ? B 51 ? B 31 ? B 50 ? 1 B G 31 1_555 B C 50 1_555 B U 32 1_555 B A 49 1_555 -0.305 -1.729 3.167 -3.806 3.242 32.224 -3.615 -0.085 2.999 5.798 6.805 32.599 18 BB_G31U32:A49C50_BB B 31 ? B 50 ? B 32 ? B 49 ? 1 B U 32 1_555 B A 49 1_555 B A 33 1_555 B U 48 1_555 -0.886 -1.335 2.972 0.068 14.366 33.136 -3.849 1.440 2.221 23.844 -0.113 36.036 19 BB_U32A33:U48A49_BB B 32 ? B 49 ? B 33 ? B 48 ? 1 B A 33 1_555 B U 48 1_555 B C 34 1_555 B G 47 1_555 0.491 -1.198 3.173 0.938 7.928 33.349 -3.195 -0.696 2.834 13.573 -1.607 34.265 20 BB_A33C34:G47U48_BB B 33 ? B 48 ? B 34 ? B 47 ? 1 B C 34 1_555 B G 47 1_555 B C 35 1_555 B G 46 1_555 0.053 -1.949 3.328 0.940 5.946 28.218 -5.183 0.094 2.865 12.024 -1.900 28.840 21 BB_C34C35:G46G47_BB B 34 ? B 47 ? B 35 ? B 46 ? # _atom_sites.entry_id 3EGZ _atom_sites.fract_transf_matrix[1][1] 0.008276 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008276 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018090 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N O P SE # loop_