HEADER OXIDOREDUCTASE/IMMUNE SYSTEM 12-SEP-08 3EHB TITLE A D-PATHWAY MUTATION DECOUPLES THE PARACOCCUS DENITRIFICANS CYTOCHROME TITLE 2 C OXIDASE BY ALTERING THE SIDE CHAIN ORIENTATION OF A DISTANT, TITLE 3 CONSERVED GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 1-BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-545; COMPND 5 SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I-BETA, CYTOCHROME AA3 COMPND 6 SUBUNIT 1-BETA; COMPND 7 EC: 1.9.3.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 2; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE II, CYTOCHROME AA3 SUBUNIT COMPND 14 2, OXIDASE AA(3) SUBUNIT 2; COMPND 15 EC: 1.9.3.1; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: FV FRAGMENT CHAIN H; COMPND 19 CHAIN: C; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: FV FRAGMENT CHAIN L; COMPND 23 CHAIN: D; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 266; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 8 ORGANISM_TAXID: 266; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 MOL_ID: 4; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTON PUMPING, WATER CHAIN, ELECTRON TRANSFER, CELL INNER MEMBRANE, KEYWDS 2 CELL MEMBRANE, COPPER, ELECTRON TRANSPORT, HEME, HYDROGEN ION KEYWDS 3 TRANSPORT, ION TRANSPORT, IRON, MEMBRANE, METAL-BINDING, KEYWDS 4 OXIDOREDUCTASE, RESPIRATORY CHAIN, TRANSMEMBRANE, TRANSPORT, KEYWDS 5 PYRROLIDONE CARBOXYLIC ACID, OXIDOREDUCTASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEPKE,H.MUELLER,G.PENG REVDAT 6 16-OCT-24 3EHB 1 REMARK REVDAT 5 01-NOV-23 3EHB 1 REMARK REVDAT 4 10-NOV-21 3EHB 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3EHB 1 REMARK REVDAT 2 09-DEC-08 3EHB 1 JRNL VERSN REVDAT 1 30-SEP-08 3EHB 0 JRNL AUTH K.L.DURR,J.KOEPKE,P.HELLWIG,H.MULLER,H.ANGERER,G.PENG, JRNL AUTH 2 E.OLKHOVA,O.-M.H.RICHTER,B.LUDWIG,H.MICHEL JRNL TITL A D-PATHWAY MUTATION DECOUPLES THE PARACOCCUSDENITRIFICANS JRNL TITL 2 CYTOCHROME C OXIDASE BY ALTERING THE SIDE-CHAIN ORIENTATION JRNL TITL 3 OF A DISTANT CONSERVED GLUTAMATE JRNL REF J.MOL.BIOL. V. 384 865 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18930738 JRNL DOI 10.1016/J.JMB.2008.09.074 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 84230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 691 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8944 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12142 ; 2.488 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1003 ; 7.709 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 343 ;37.705 ;23.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1240 ;19.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;25.498 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1348 ; 0.182 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6376 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4472 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5956 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 465 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.184 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.277 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.050 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5189 ; 4.385 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8089 ; 5.882 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5284 ; 4.243 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4049 ; 5.773 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DUE TO A FEATURE IN THE REFINEMENT REMARK 3 PROGRAM, THE STRUCTURE WAS REFINED WITH OXT ON ONE OR MORE REMARK 3 RESIDUES THAT ARE NOT THE TERMINAL RESIDUES OF THE SEQUENCE. IN REMARK 3 ALL THESE INSTANCES THE OXT WAS CHANGED TO N OF THE NEXT RESIDUE REMARK 4 REMARK 4 3EHB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92021 REMARK 200 MONOCHROMATOR : DOUBLE MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87146 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: PDB ENTRY 1AR1 REMARK 200 REMARK 200 REMARK: 25% (V/V) GLYCEROL WAS USED AS CRYOPROTECTANT TO FLASH REMARK 200 FREEZE IN A GASEOUS LIQUID NITROGEN COOLED STREAM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPEG 2000 IS CONTAINED IN THE REMARK 280 CRYSTALLIZATION BUFFER PH 5.5, PH 7.3, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.23050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.74350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.66600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.74350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.23050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.66600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -154.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 ASP A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 ASP A 14 REMARK 465 THR A 15 REMARK 465 ARG A 16 REMARK 465 PRO A 547 REMARK 465 LYS A 548 REMARK 465 ARG A 549 REMARK 465 GLU A 550 REMARK 465 ASP A 551 REMARK 465 TRP A 552 REMARK 465 ASP A 553 REMARK 465 ARG A 554 REMARK 465 ALA A 555 REMARK 465 HIS A 556 REMARK 465 ALA A 557 REMARK 465 HIS A 558 REMARK 465 MET B -28 REMARK 465 MET B -27 REMARK 465 ALA B -26 REMARK 465 ILE B -25 REMARK 465 ALA B -24 REMARK 465 THR B -23 REMARK 465 LYS B -22 REMARK 465 ARG B -21 REMARK 465 ARG B -20 REMARK 465 GLY B -19 REMARK 465 VAL B -18 REMARK 465 ALA B -17 REMARK 465 ALA B -16 REMARK 465 VAL B -15 REMARK 465 MET B -14 REMARK 465 SER B -13 REMARK 465 LEU B -12 REMARK 465 GLY B -11 REMARK 465 VAL B -10 REMARK 465 ALA B -9 REMARK 465 THR B -8 REMARK 465 MET B -7 REMARK 465 THR B -6 REMARK 465 ALA B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ALA B -2 REMARK 465 LEU B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 254 REMARK 465 SER B 255 REMARK 465 ASP B 256 REMARK 465 TYR B 257 REMARK 465 LEU B 258 REMARK 465 PRO B 259 REMARK 465 ALA B 260 REMARK 465 SER B 261 REMARK 465 PRO B 262 REMARK 465 VAL B 263 REMARK 465 LYS B 264 REMARK 465 LEU B 265 REMARK 465 ALA B 266 REMARK 465 SER B 267 REMARK 465 ALA B 268 REMARK 465 GLU B 269 REMARK 465 TRP C 120 REMARK 465 ARG C 121 REMARK 465 HIS C 122 REMARK 465 PRO C 123 REMARK 465 GLN C 124 REMARK 465 PHE C 125 REMARK 465 GLY C 126 REMARK 465 GLY C 127 REMARK 465 GLU D 110 REMARK 465 GLN D 111 REMARK 465 LYS D 112 REMARK 465 LEU D 113 REMARK 465 ILE D 114 REMARK 465 SER D 115 REMARK 465 GLU D 116 REMARK 465 GLU D 117 REMARK 465 ASP D 118 REMARK 465 LEU D 119 REMARK 465 MET D 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 546 CA C O CB CG CD1 CD2 REMARK 470 ASP B 253 CA C O CB CG OD1 OD2 REMARK 470 ALA C 119 CA C O CB REMARK 470 ARG D 109 CA C O CB CG CD NE REMARK 470 ARG D 109 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 562 O HOH A 582 1.68 REMARK 500 NH1 ARG A 208 O MET A 212 1.93 REMARK 500 NE2 HIS A 276 CE2 TYR A 280 1.96 REMARK 500 OE2 GLU C 1 O GLY C 26 2.13 REMARK 500 NH2 ARG A 468 OD2 ASP B 35 2.19 REMARK 500 OH TYR A 440 OE1 GLU A 442 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 407 CE2 TYR A 407 CD2 0.112 REMARK 500 PHE A 460 CZ PHE A 460 CE2 0.123 REMARK 500 TYR B 125 CZ TYR B 125 CE2 0.099 REMARK 500 ALA B 182 CA ALA B 182 CB 0.136 REMARK 500 CYS D 23 CB CYS D 23 SG -0.141 REMARK 500 ALA D 51 CA ALA D 51 CB 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 GLY A 61 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 249 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 263 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 263 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 LEU A 271 CA - CB - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 VAL A 388 CG1 - CB - CG2 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 400 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 VAL A 408 CG1 - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 468 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 468 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 468 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 PRO B 66 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 LEU B 137 CB - CG - CD1 ANGL. DEV. = -12.4 DEGREES REMARK 500 LEU B 137 CB - CG - CD2 ANGL. DEV. = 13.3 DEGREES REMARK 500 LEU B 155 C - N - CA ANGL. DEV. = -18.2 DEGREES REMARK 500 VAL B 163 CG1 - CB - CG2 ANGL. DEV. = 10.8 DEGREES REMARK 500 VAL B 166 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 PRO B 228 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 LYS B 238 CD - CE - NZ ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 18 112.52 -39.93 REMARK 500 TYR A 64 -54.71 -136.22 REMARK 500 ALA A 76 30.16 -78.12 REMARK 500 SER A 77 15.56 -143.04 REMARK 500 GLU A 79 124.37 -16.78 REMARK 500 VAL A 102 -82.11 -127.71 REMARK 500 MET A 207 21.06 -142.41 REMARK 500 LYS A 299 62.16 74.32 REMARK 500 LYS A 300 134.60 -176.37 REMARK 500 MET A 327 19.75 -145.36 REMARK 500 ALA A 396 -48.87 -25.42 REMARK 500 ALA A 420 -32.23 -37.59 REMARK 500 PRO A 479 150.27 -40.44 REMARK 500 VAL A 517 83.79 -153.32 REMARK 500 TRP A 523 -81.85 -111.76 REMARK 500 PHE A 543 71.97 48.04 REMARK 500 GLU A 544 -81.93 -70.46 REMARK 500 ASP B 2 -64.15 -99.94 REMARK 500 ILE B 10 -50.37 -120.47 REMARK 500 VAL B 67 83.35 72.64 REMARK 500 PHE B 71 154.35 -47.53 REMARK 500 HIS B 73 -176.82 -179.26 REMARK 500 ASN B 74 96.45 159.14 REMARK 500 MET B 227 67.29 -152.26 REMARK 500 SER B 235 158.39 -43.24 REMARK 500 LEU C 18 144.39 -172.34 REMARK 500 LYS C 43 21.78 82.68 REMARK 500 ASN C 77 45.93 71.62 REMARK 500 TYR C 102 -115.94 71.11 REMARK 500 SER C 118 70.63 -53.87 REMARK 500 TYR D 30 -117.13 57.34 REMARK 500 LEU D 47 -55.52 -120.18 REMARK 500 ALA D 51 -42.88 72.31 REMARK 500 SER D 77 81.59 35.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 8 GLY C 9 60.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 563 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 56 O REMARK 620 2 GLU A 56 OE2 85.7 REMARK 620 3 HIS A 59 O 91.0 175.2 REMARK 620 4 GLY A 61 O 159.7 103.4 80.8 REMARK 620 5 GLN A 63 OE1 130.3 75.1 104.6 69.9 REMARK 620 6 HOH A 669 O 74.5 85.5 97.1 88.1 145.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEA A 559 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HEA A 559 NA 94.0 REMARK 620 3 HEA A 559 NB 96.7 87.9 REMARK 620 4 HEA A 559 NC 86.7 178.5 93.4 REMARK 620 5 HEA A 559 ND 82.9 93.4 178.7 85.4 REMARK 620 6 HIS A 413 NE2 176.1 85.8 87.1 93.5 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 561 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 276 ND1 REMARK 620 2 HIS A 325 NE2 106.4 REMARK 620 3 HIS A 326 NE2 135.4 97.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 562 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 403 NE2 REMARK 620 2 ASP A 404 OD1 82.2 REMARK 620 3 HOH A 684 O 98.7 68.7 REMARK 620 4 GLU B 218 OE1 172.9 104.8 84.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEA A 560 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 411 NE2 REMARK 620 2 HEA A 560 NA 89.3 REMARK 620 3 HEA A 560 NB 95.8 82.6 REMARK 620 4 HEA A 560 NC 95.5 174.8 94.8 REMARK 620 5 HEA A 560 ND 90.7 93.9 172.6 88.0 REMARK 620 6 PER A 576 O2 166.6 82.2 93.3 93.5 79.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEA A 559 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEA A 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 561 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 563 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 564 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 565 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 566 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 567 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 568 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 569 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 570 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 571 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 572 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 573 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 574 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 575 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PER A 576 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA B 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT B 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT B 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT B 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT D 121 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AR1 RELATED DB: PDB REMARK 900 WILD TYPE, ROOM TEMPERATURE DBREF 3EHB A 1 558 UNP P98002 COX1B_PARDE 1 558 DBREF 3EHB B -28 269 UNP P08306 COX2_PARDE 1 298 DBREF 3EHB C 1 127 PDB 3EHB 3EHB 1 127 DBREF 3EHB D 1 120 PDB 3EHB 3EHB 1 120 SEQADV 3EHB ASP A 131 UNP P98002 ASN 131 ENGINEERED MUTATION SEQRES 1 A 558 MET ALA ASP ALA ALA VAL HIS GLY HIS GLY ASP HIS HIS SEQRES 2 A 558 ASP THR ARG GLY PHE PHE THR ARG TRP PHE MET SER THR SEQRES 3 A 558 ASN HIS LYS ASP ILE GLY ILE LEU TYR LEU PHE THR ALA SEQRES 4 A 558 GLY ILE VAL GLY LEU ILE SER VAL CYS PHE THR VAL TYR SEQRES 5 A 558 MET ARG MET GLU LEU GLN HIS PRO GLY VAL GLN TYR MET SEQRES 6 A 558 CYS LEU GLU GLY ALA ARG LEU ILE ALA ASP ALA SER ALA SEQRES 7 A 558 GLU CYS THR PRO ASN GLY HIS LEU TRP ASN VAL MET ILE SEQRES 8 A 558 THR TYR HIS GLY VAL LEU MET MET PHE PHE VAL VAL ILE SEQRES 9 A 558 PRO ALA LEU PHE GLY GLY PHE GLY ASN TYR PHE MET PRO SEQRES 10 A 558 LEU HIS ILE GLY ALA PRO ASP MET ALA PHE PRO ARG LEU SEQRES 11 A 558 ASP ASN LEU SER TYR TRP MET TYR VAL CYS GLY VAL ALA SEQRES 12 A 558 LEU GLY VAL ALA SER LEU LEU ALA PRO GLY GLY ASN ASP SEQRES 13 A 558 GLN MET GLY SER GLY VAL GLY TRP VAL LEU TYR PRO PRO SEQRES 14 A 558 LEU SER THR THR GLU ALA GLY TYR SER MET ASP LEU ALA SEQRES 15 A 558 ILE PHE ALA VAL HIS VAL SER GLY ALA SER SER ILE LEU SEQRES 16 A 558 GLY ALA ILE ASN ILE ILE THR THR PHE LEU ASN MET ARG SEQRES 17 A 558 ALA PRO GLY MET THR LEU PHE LYS VAL PRO LEU PHE ALA SEQRES 18 A 558 TRP SER VAL PHE ILE THR ALA TRP LEU ILE LEU LEU SER SEQRES 19 A 558 LEU PRO VAL LEU ALA GLY ALA ILE THR MET LEU LEU MET SEQRES 20 A 558 ASP ARG ASN PHE GLY THR GLN PHE PHE ASP PRO ALA GLY SEQRES 21 A 558 GLY GLY ASP PRO VAL LEU TYR GLN HIS ILE LEU TRP PHE SEQRES 22 A 558 PHE GLY HIS PRO GLU VAL TYR ILE ILE ILE LEU PRO GLY SEQRES 23 A 558 PHE GLY ILE ILE SER HIS VAL ILE SER THR PHE ALA LYS SEQRES 24 A 558 LYS PRO ILE PHE GLY TYR LEU PRO MET VAL LEU ALA MET SEQRES 25 A 558 ALA ALA ILE GLY ILE LEU GLY PHE VAL VAL TRP ALA HIS SEQRES 26 A 558 HIS MET TYR THR ALA GLY MET SER LEU THR GLN GLN ALA SEQRES 27 A 558 TYR PHE MET LEU ALA THR MET THR ILE ALA VAL PRO THR SEQRES 28 A 558 GLY ILE LYS VAL PHE SER TRP ILE ALA THR MET TRP GLY SEQRES 29 A 558 GLY SER ILE GLU PHE LYS THR PRO MET LEU TRP ALA PHE SEQRES 30 A 558 GLY PHE LEU PHE LEU PHE THR VAL GLY GLY VAL THR GLY SEQRES 31 A 558 VAL VAL LEU SER GLN ALA PRO LEU ASP ARG VAL TYR HIS SEQRES 32 A 558 ASP THR TYR TYR VAL VAL ALA HIS PHE HIS TYR VAL MET SEQRES 33 A 558 SER LEU GLY ALA VAL PHE GLY ILE PHE ALA GLY VAL TYR SEQRES 34 A 558 TYR TRP ILE GLY LYS MET SER GLY ARG GLN TYR PRO GLU SEQRES 35 A 558 TRP ALA GLY GLN LEU HIS PHE TRP MET MET PHE ILE GLY SEQRES 36 A 558 SER ASN LEU ILE PHE PHE PRO GLN HIS PHE LEU GLY ARG SEQRES 37 A 558 GLN GLY MET PRO ARG ARG TYR ILE ASP TYR PRO VAL GLU SEQRES 38 A 558 PHE ALA TYR TRP ASN ASN ILE SER SER ILE GLY ALA TYR SEQRES 39 A 558 ILE SER PHE ALA SER PHE LEU PHE PHE ILE GLY ILE VAL SEQRES 40 A 558 PHE TYR THR LEU PHE ALA GLY LYS ARG VAL ASN VAL PRO SEQRES 41 A 558 ASN TYR TRP ASN GLU HIS ALA ASP THR LEU GLU TRP THR SEQRES 42 A 558 LEU PRO SER PRO PRO PRO GLU HIS THR PHE GLU THR LEU SEQRES 43 A 558 PRO LYS ARG GLU ASP TRP ASP ARG ALA HIS ALA HIS SEQRES 1 B 298 MET MET ALA ILE ALA THR LYS ARG ARG GLY VAL ALA ALA SEQRES 2 B 298 VAL MET SER LEU GLY VAL ALA THR MET THR ALA VAL PRO SEQRES 3 B 298 ALA LEU ALA GLN ASP VAL LEU GLY ASP LEU PRO VAL ILE SEQRES 4 B 298 GLY LYS PRO VAL ASN GLY GLY MET ASN PHE GLN PRO ALA SEQRES 5 B 298 SER SER PRO LEU ALA HIS ASP GLN GLN TRP LEU ASP HIS SEQRES 6 B 298 PHE VAL LEU TYR ILE ILE THR ALA VAL THR ILE PHE VAL SEQRES 7 B 298 CYS LEU LEU LEU LEU ILE CYS ILE VAL ARG PHE ASN ARG SEQRES 8 B 298 ARG ALA ASN PRO VAL PRO ALA ARG PHE THR HIS ASN THR SEQRES 9 B 298 PRO ILE GLU VAL ILE TRP THR LEU VAL PRO VAL LEU ILE SEQRES 10 B 298 LEU VAL ALA ILE GLY ALA PHE SER LEU PRO ILE LEU PHE SEQRES 11 B 298 ARG SER GLN GLU MET PRO ASN ASP PRO ASP LEU VAL ILE SEQRES 12 B 298 LYS ALA ILE GLY HIS GLN TRP TYR TRP SER TYR GLU TYR SEQRES 13 B 298 PRO ASN ASP GLY VAL ALA PHE ASP ALA LEU MET LEU GLU SEQRES 14 B 298 LYS GLU ALA LEU ALA ASP ALA GLY TYR SER GLU ASP GLU SEQRES 15 B 298 TYR LEU LEU ALA THR ASP ASN PRO VAL VAL VAL PRO VAL SEQRES 16 B 298 GLY LYS LYS VAL LEU VAL GLN VAL THR ALA THR ASP VAL SEQRES 17 B 298 ILE HIS ALA TRP THR ILE PRO ALA PHE ALA VAL LYS GLN SEQRES 18 B 298 ASP ALA VAL PRO GLY ARG ILE ALA GLN LEU TRP PHE SER SEQRES 19 B 298 VAL ASP GLN GLU GLY VAL TYR PHE GLY GLN CYS SER GLU SEQRES 20 B 298 LEU CYS GLY ILE ASN HIS ALA TYR MET PRO ILE VAL VAL SEQRES 21 B 298 LYS ALA VAL SER GLN GLU LYS TYR GLU ALA TRP LEU ALA SEQRES 22 B 298 GLY ALA LYS GLU GLU PHE ALA ALA ASP ALA SER ASP TYR SEQRES 23 B 298 LEU PRO ALA SER PRO VAL LYS LEU ALA SER ALA GLU SEQRES 1 C 127 GLU VAL LYS LEU GLN GLU SER GLY GLY ASP LEU VAL GLN SEQRES 2 C 127 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 C 127 PHE THR PHE SER SER TYR THR MET SER TRP VAL ARG GLN SEQRES 4 C 127 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA SER ILE ASN SEQRES 5 C 127 ASN GLY GLY GLY ARG THR TYR TYR PRO ASP THR VAL LYS SEQRES 6 C 127 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 C 127 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP THR SEQRES 8 C 127 ALA MET TYR TYR CYS VAL ARG HIS GLU TYR TYR TYR ALA SEQRES 9 C 127 MET ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SEQRES 10 C 127 SER ALA TRP ARG HIS PRO GLN PHE GLY GLY SEQRES 1 D 120 ASP ILE GLU LEU THR GLN THR PRO VAL SER LEU SER ALA SEQRES 2 D 120 SER VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 D 120 GLU ASN ILE TYR SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 D 120 GLN GLY LYS SER PRO GLN PHE LEU VAL TYR ASN ALA LYS SEQRES 5 D 120 THR LEU GLY GLU GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 D 120 GLY SER GLY THR GLN PHE SER LEU LYS ILE ASN SER LEU SEQRES 7 D 120 LEU PRO GLU ASP PHE GLY SER TYR TYR CYS GLN HIS HIS SEQRES 8 D 120 TYR GLY THR PRO PRO LEU THR PHE GLY GLY GLY THR LYS SEQRES 9 D 120 LEU GLU ILE LYS ARG GLU GLN LYS LEU ILE SER GLU GLU SEQRES 10 D 120 ASP LEU MET HET HEA A 559 60 HET HEA A 560 60 HET CU A 561 1 HET MG A 562 1 HET CA A 563 1 HET LDA A 564 16 HET LDA A 565 16 HET LDA A 566 16 HET LDA A 567 16 HET LMT A 568 35 HET LMT A 569 35 HET LMT A 570 35 HET LMT A 571 35 HET LMT A 572 35 HET LMT A 573 35 HET LMT A 574 35 HET LMT A 575 35 HET PER A 576 2 HET CU B 270 1 HET CU B 271 1 HET LDA B 272 16 HET LDA B 273 16 HET LDA B 274 16 HET LDA B 275 16 HET LDA B 276 16 HET LMT B 277 47 HET LMT B 278 35 HET LMT B 279 35 HET LMT D 121 35 HETNAM HEA HEME-A HETNAM CU COPPER (II) ION HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM PER PEROXIDE ION FORMUL 5 HEA 2(C49 H56 FE N4 O6) FORMUL 7 CU 3(CU 2+) FORMUL 8 MG MG 2+ FORMUL 9 CA CA 2+ FORMUL 10 LDA 9(C14 H31 N O) FORMUL 14 LMT 12(C24 H46 O11) FORMUL 22 PER O2 2- FORMUL 34 HOH *379(H2 O) HELIX 1 1 PHE A 18 MET A 24 1 7 HELIX 2 2 ASN A 27 GLN A 58 1 32 HELIX 3 3 ASN A 83 VAL A 102 1 20 HELIX 4 4 VAL A 102 PHE A 108 1 7 HELIX 5 5 GLY A 110 GLY A 121 1 12 HELIX 6 6 PHE A 127 ALA A 151 1 25 HELIX 7 7 PRO A 169 GLU A 174 1 6 HELIX 8 8 TYR A 177 MET A 207 1 31 HELIX 9 9 THR A 213 VAL A 217 5 5 HELIX 10 10 PRO A 218 PHE A 251 1 34 HELIX 11 11 ASP A 257 GLY A 261 5 5 HELIX 12 12 ASP A 263 LYS A 299 1 37 HELIX 13 13 GLY A 304 GLY A 319 1 16 HELIX 14 14 PHE A 320 VAL A 321 5 2 HELIX 15 15 VAL A 322 MET A 327 5 6 HELIX 16 16 SER A 333 ILE A 347 1 15 HELIX 17 17 ILE A 347 TRP A 363 1 17 HELIX 18 18 LYS A 370 GLN A 395 1 26 HELIX 19 19 GLN A 395 HIS A 403 1 9 HELIX 20 20 THR A 405 LEU A 418 1 14 HELIX 21 21 GLY A 419 GLY A 437 1 19 HELIX 22 22 PRO A 441 GLN A 469 1 29 HELIX 23 23 PRO A 479 GLU A 481 5 3 HELIX 24 24 PHE A 482 GLY A 514 1 33 HELIX 25 25 THR A 529 LEU A 534 5 6 HELIX 26 26 SER B 25 PHE B 60 1 36 HELIX 27 27 ASN B 74 GLU B 105 1 32 HELIX 28 28 LEU B 144 GLY B 148 5 5 HELIX 29 29 SER B 150 TYR B 154 5 5 HELIX 30 30 PRO B 186 ALA B 189 5 4 HELIX 31 31 ASN B 223 MET B 227 5 5 HELIX 32 32 SER B 235 PHE B 250 1 16 HELIX 33 33 THR C 28 TYR C 32 5 5 HELIX 34 34 LEU D 79 PHE D 83 5 5 SHEET 1 A 2 MET A 65 CYS A 66 0 SHEET 2 A 2 GLY A 69 ALA A 70 -1 O GLY A 69 N CYS A 66 SHEET 1 B 2 ARG A 438 GLN A 439 0 SHEET 2 B 2 LYS A 515 ARG A 516 -1 O LYS A 515 N GLN A 439 SHEET 1 C 4 VAL B 9 GLY B 11 0 SHEET 2 C 4 GLY B 210 GLY B 214 1 O VAL B 211 N ILE B 10 SHEET 3 C 4 ILE B 229 VAL B 234 -1 O VAL B 231 N TYR B 212 SHEET 4 C 4 VAL B 162 PRO B 165 1 N VAL B 162 O LYS B 232 SHEET 1 D 5 VAL B 132 ALA B 136 0 SHEET 2 D 5 TYR B 122 TYR B 127 -1 N TYR B 125 O PHE B 134 SHEET 3 D 5 LEU B 112 HIS B 119 -1 N HIS B 119 O TYR B 122 SHEET 4 D 5 LYS B 169 ALA B 176 1 O GLN B 173 N ALA B 116 SHEET 5 D 5 ALA B 200 SER B 205 -1 O PHE B 204 N VAL B 170 SHEET 1 E 2 HIS B 181 ILE B 185 0 SHEET 2 E 2 VAL B 190 ALA B 194 -1 O ALA B 194 N HIS B 181 SHEET 1 F 4 LYS C 3 SER C 7 0 SHEET 2 F 4 LEU C 18 SER C 25 -1 O SER C 25 N LYS C 3 SHEET 3 F 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 F 4 THR C 69 ASP C 73 -1 N ASP C 73 O THR C 78 SHEET 1 G 6 ASP C 10 VAL C 12 0 SHEET 2 G 6 THR C 112 VAL C 116 1 O THR C 115 N VAL C 12 SHEET 3 G 6 ALA C 92 GLU C 100 -1 N TYR C 94 O THR C 112 SHEET 4 G 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 G 6 LEU C 45 ILE C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 G 6 THR C 58 TYR C 59 -1 O TYR C 59 N SER C 50 SHEET 1 H 4 ASP C 10 VAL C 12 0 SHEET 2 H 4 THR C 112 VAL C 116 1 O THR C 115 N VAL C 12 SHEET 3 H 4 ALA C 92 GLU C 100 -1 N TYR C 94 O THR C 112 SHEET 4 H 4 ALA C 104 TRP C 108 -1 O TYR C 107 N ARG C 98 SHEET 1 I 4 LEU D 4 THR D 7 0 SHEET 2 I 4 VAL D 19 ALA D 25 -1 O THR D 22 N THR D 7 SHEET 3 I 4 GLN D 70 ILE D 75 -1 O PHE D 71 N CYS D 23 SHEET 4 I 4 PHE D 62 SER D 67 -1 N SER D 63 O LYS D 74 SHEET 1 J 6 SER D 10 ALA D 13 0 SHEET 2 J 6 THR D 103 ILE D 107 1 O LYS D 104 N LEU D 11 SHEET 3 J 6 GLY D 84 HIS D 90 -1 N TYR D 86 O THR D 103 SHEET 4 J 6 LEU D 33 GLN D 38 -1 N GLN D 38 O SER D 85 SHEET 5 J 6 PRO D 44 TYR D 49 -1 O GLN D 45 N GLN D 37 SHEET 6 J 6 THR D 53 LEU D 54 -1 O THR D 53 N TYR D 49 SSBOND 1 CYS A 66 CYS A 80 1555 1555 2.02 SSBOND 2 CYS C 22 CYS C 96 1555 1555 2.14 SSBOND 3 CYS D 23 CYS D 88 1555 1555 2.24 LINK O GLU A 56 CA CA A 563 1555 1555 2.39 LINK OE2 GLU A 56 CA CA A 563 1555 1555 2.30 LINK O HIS A 59 CA CA A 563 1555 1555 2.28 LINK O GLY A 61 CA CA A 563 1555 1555 2.35 LINK OE1 GLN A 63 CA CA A 563 1555 1555 2.29 LINK NE2 HIS A 94 FE HEA A 559 1555 1555 1.94 LINK ND1 HIS A 276 CU CU A 561 1555 1555 2.18 LINK NE2 HIS A 325 CU CU A 561 1555 1555 2.19 LINK NE2 HIS A 326 CU CU A 561 1555 1555 2.04 LINK NE2 HIS A 403 MG MG A 562 1555 1555 1.98 LINK OD1 ASP A 404 MG MG A 562 1555 1555 2.14 LINK NE2 HIS A 411 FE HEA A 560 1555 1555 2.00 LINK NE2 HIS A 413 FE HEA A 559 1555 1555 1.96 LINK FE HEA A 560 O2 PER A 576 1555 1555 2.21 LINK MG MG A 562 O HOH A 684 1555 1555 2.08 LINK MG MG A 562 OE1 GLU B 218 1555 1555 2.07 LINK CA CA A 563 O HOH A 669 1555 1555 2.43 LINK ND1 HIS B 181 CU CU B 271 1555 1555 1.94 LINK ND1 HIS B 224 CU CU B 270 1555 1555 1.97 CISPEP 1 PRO A 168 PRO A 169 0 -0.30 CISPEP 2 SER A 536 PRO A 537 0 -3.19 CISPEP 3 GLN B 120 TRP B 121 0 1.83 CISPEP 4 THR D 7 PRO D 8 0 -7.52 CISPEP 5 PRO D 95 PRO D 96 0 5.78 SITE 1 AC1 28 LEU A 36 GLY A 40 VAL A 47 THR A 50 SITE 2 AC1 28 MET A 53 ARG A 54 TRP A 87 ILE A 91 SITE 3 AC1 28 HIS A 94 MET A 98 MET A 99 VAL A 103 SITE 4 AC1 28 GLY A 163 TRP A 164 TYR A 406 PHE A 412 SITE 5 AC1 28 HIS A 413 MET A 416 SER A 417 MET A 452 SITE 6 AC1 28 PHE A 460 GLN A 463 ARG A 473 ARG A 474 SITE 7 AC1 28 SER A 496 PHE A 500 HOH A 583 HOH A 618 SITE 1 AC2 25 TRP A 164 TRP A 272 VAL A 279 TYR A 280 SITE 2 AC2 25 HIS A 325 HIS A 326 THR A 344 THR A 351 SITE 3 AC2 25 GLY A 352 VAL A 355 GLY A 387 GLY A 390 SITE 4 AC2 25 LEU A 393 SER A 394 ASP A 399 HIS A 403 SITE 5 AC2 25 VAL A 408 HIS A 411 PHE A 412 VAL A 415 SITE 6 AC2 25 MET A 416 ARG A 473 PER A 576 HOH A 580 SITE 7 AC2 25 HOH A 581 SITE 1 AC3 4 HIS A 276 HIS A 325 HIS A 326 PER A 576 SITE 1 AC4 6 HIS A 403 ASP A 404 HOH A 582 HOH A 684 SITE 2 AC4 6 GLU B 218 HOH B 280 SITE 1 AC5 5 GLU A 56 HIS A 59 GLY A 61 GLN A 63 SITE 2 AC5 5 HOH A 669 SITE 1 AC6 3 TYR A 484 LMT A 572 LMT B 278 SITE 1 AC7 3 MET A 55 LEU A 72 LMT A 571 SITE 1 AC8 1 GLN A 336 SITE 1 AC9 3 PHE A 37 PHE A 512 LMT A 570 SITE 1 BC1 4 LEU A 447 PHE A 502 LMT A 569 HOH A 660 SITE 1 BC2 6 PRO A 441 TRP A 443 GLY A 505 TYR A 509 SITE 2 BC2 6 LMT A 568 SER D 10 SITE 1 BC3 7 ARG A 21 LYS A 29 MET A 435 SER A 436 SITE 2 BC3 7 ILE A 504 PRO A 537 LDA A 567 SITE 1 BC4 6 HIS A 59 TYR A 64 ALA A 74 TYR A 494 SITE 2 BC4 6 LDA A 565 HOH A 624 SITE 1 BC5 4 MET A 451 ILE A 491 TYR A 494 LDA A 564 SITE 1 BC6 1 ILE B 57 SITE 1 BC7 6 LEU A 342 THR A 346 VAL A 349 VAL B 86 SITE 2 BC7 6 LEU B 89 VAL B 90 SITE 1 BC8 4 MET A 24 THR A 26 ARG A 129 ASN A 132 SITE 1 BC9 5 HIS A 276 VAL A 279 HIS A 326 HEA A 560 SITE 2 BC9 5 CU A 561 SITE 1 CC1 5 CYS B 216 GLU B 218 CYS B 220 HIS B 224 SITE 2 CC1 5 CU B 271 SITE 1 CC2 5 HIS B 181 CYS B 216 CYS B 220 MET B 227 SITE 2 CC2 5 CU B 270 SITE 1 CC3 3 ARG A 468 ASN B 19 LDA B 275 SITE 1 CC4 2 HIS B 36 PHE B 37 SITE 1 CC5 6 PHE A 356 PHE B 48 ILE B 77 ILE B 80 SITE 2 CC5 6 VAL B 84 LMT B 279 SITE 1 CC6 3 TYR B 40 THR B 43 LDA B 272 SITE 1 CC7 3 ALA B 94 LMT B 277 LMT D 121 SITE 1 CC8 6 LEU B 97 PRO B 98 PHE B 101 ARG B 102 SITE 2 CC8 6 GLU B 105 LDA B 276 SITE 1 CC9 6 PHE A 461 TRP A 485 LDA A 564 ASN B 15 SITE 2 CC9 6 GLY B 16 HOH B 351 SITE 1 DC1 7 PHE A 356 LEU B 52 PHE B 71 HIS B 73 SITE 2 DC1 7 ASN B 74 TRP B 81 LDA B 274 SITE 1 DC2 9 TRP B 33 LEU B 87 VAL B 90 PHE B 95 SITE 2 DC2 9 ILE B 99 LDA B 276 GLU D 27 ASN D 28 SITE 3 DC2 9 TYR D 30 CRYST1 84.461 151.332 157.487 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011840 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006350 0.00000