HEADER UNKNOWN FUNCTION 12-SEP-08 3EHC TITLE CRYSTAL STRUCTURE OF A SNOAL-LIKE POLYKETIDE CYCLASE (ATU3018) FROM TITLE 2 AGROBACTERIUM TUMEFACIENS STR. C58 AT 2.12 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNOAL-LIKE POLYKETIDE CYCLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 GENE: 17741376, AGR_L_3571, ATU3018; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3EHC 1 REMARK SEQADV REVDAT 6 24-JUL-19 3EHC 1 REMARK LINK REVDAT 5 25-OCT-17 3EHC 1 REMARK REVDAT 4 13-JUL-11 3EHC 1 VERSN REVDAT 3 23-MAR-11 3EHC 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3EHC 1 VERSN REVDAT 1 23-SEP-08 3EHC 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SNOAL-LIKE POLYKETIDE CYCLASE JRNL TITL 2 (17741376) FROM AGROBACTERIUM TUMEFACIENS STR. C58 (DUPONT) JRNL TITL 3 AT 2.12 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 47114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3251 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 481 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : -1.93000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.346 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4302 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2924 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5829 ; 1.431 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7028 ; 1.009 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 6.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;33.615 ;23.361 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 706 ;14.570 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;13.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4846 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 987 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 748 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2922 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2054 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2379 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 305 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.291 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2665 ; 1.575 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1027 ; 0.307 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4112 ; 2.379 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1878 ; 4.287 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1717 ; 5.826 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 127 2 REMARK 3 1 B 3 B 127 2 REMARK 3 1 C 3 C 127 2 REMARK 3 1 D 3 D 127 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 715 ; 0.060 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 B (A): 715 ; 0.070 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 C (A): 715 ; 0.060 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 D (A): 715 ; 0.070 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 956 ; 0.330 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 956 ; 0.390 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 956 ; 0.380 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 956 ; 0.400 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 715 ; 0.160 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 715 ; 0.140 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 715 ; 0.150 ; 0.500 REMARK 3 TIGHT THERMAL 1 D (A**2): 715 ; 0.140 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 956 ; 1.020 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 956 ; 1.040 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 956 ; 0.950 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 956 ; 0.930 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4737 24.1131 -25.0319 REMARK 3 T TENSOR REMARK 3 T11: -0.1426 T22: -0.1829 REMARK 3 T33: -0.1666 T12: 0.0308 REMARK 3 T13: -0.0388 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 1.8114 L22: 2.4254 REMARK 3 L33: 0.8593 L12: -0.5457 REMARK 3 L13: -0.2957 L23: -0.0554 REMARK 3 S TENSOR REMARK 3 S11: 0.1098 S12: -0.0623 S13: 0.0158 REMARK 3 S21: 0.0752 S22: -0.0068 S23: -0.0376 REMARK 3 S31: -0.0257 S32: -0.0371 S33: -0.1030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 127 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8604 5.2160 -12.6472 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: -0.0591 REMARK 3 T33: -0.0943 T12: 0.0187 REMARK 3 T13: 0.0018 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 1.8956 L22: 1.9054 REMARK 3 L33: 3.6311 L12: 0.5862 REMARK 3 L13: 1.7171 L23: 1.4220 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.4091 S13: -0.3226 REMARK 3 S21: 0.5516 S22: -0.0354 S23: 0.1020 REMARK 3 S31: 0.3510 S32: -0.3046 S33: 0.0400 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 127 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6561 7.3319 24.8114 REMARK 3 T TENSOR REMARK 3 T11: -0.1671 T22: -0.1909 REMARK 3 T33: -0.1376 T12: -0.0256 REMARK 3 T13: -0.0727 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.2379 L22: 2.5188 REMARK 3 L33: 1.0722 L12: 0.5478 REMARK 3 L13: -0.3095 L23: 0.0444 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: 0.0465 S13: 0.0079 REMARK 3 S21: -0.0113 S22: 0.0006 S23: -0.0016 REMARK 3 S31: 0.0326 S32: 0.0479 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 127 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5504 -11.4085 12.3817 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: -0.0545 REMARK 3 T33: -0.0690 T12: 0.0391 REMARK 3 T13: -0.0713 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 2.0083 L22: 2.9432 REMARK 3 L33: 2.8242 L12: -1.5614 REMARK 3 L13: 1.4259 L23: -1.8801 REMARK 3 S TENSOR REMARK 3 S11: 0.2954 S12: 0.4192 S13: -0.3101 REMARK 3 S21: -0.7031 S22: -0.2083 S23: 0.0644 REMARK 3 S31: 0.5071 S32: 0.3889 S33: -0.0871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 (3). ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 (4). SULFATE (SO4) IONS AND GLYCEROL (GOL) MOLECULE REMARK 3 FROM CRYSTALLIZATION SOLUTION WERE MODELED. REMARK 3 (5). UNEXPLAINED ELECTRON DENSITIES NEAR RESIDUE 77 OF REMARK 3 A/B/C/D CHAINS WERE NOT MODELED. REMARK 4 REMARK 4 3EHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97920, 0.97932 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 29.514 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.630 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5000M (NH4)2SO4, 12.0000% GLYCEROL, REMARK 280 0.1M TRIS PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.99500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.99500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY C 0 REMARK 465 GLY D 0 REMARK 465 MSE D 1 REMARK 465 GLN D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 SE CE REMARK 470 GLU A 22 CD OE1 OE2 REMARK 470 GLN A 107 CD OE1 NE2 REMARK 470 GLU B 22 CD OE1 OE2 REMARK 470 MSE C 1 CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 -152.31 -130.19 REMARK 500 SER A 83 -131.48 -142.56 REMARK 500 ASP B 67 -150.34 -128.62 REMARK 500 SER B 83 -124.26 -148.31 REMARK 500 ASP C 67 -151.87 -130.17 REMARK 500 SER C 83 -133.93 -142.76 REMARK 500 ASP D 67 -152.38 -129.31 REMARK 500 SER D 83 -123.46 -145.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 128 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390431 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EHC A 1 127 UNP Q7CRD4 Q7CRD4_AGRT5 1 127 DBREF 3EHC B 1 127 UNP Q7CRD4 Q7CRD4_AGRT5 1 127 DBREF 3EHC C 1 127 UNP Q7CRD4 Q7CRD4_AGRT5 1 127 DBREF 3EHC D 1 127 UNP Q7CRD4 Q7CRD4_AGRT5 1 127 SEQADV 3EHC GLY A 0 UNP Q7CRD4 EXPRESSION TAG SEQADV 3EHC GLY B 0 UNP Q7CRD4 EXPRESSION TAG SEQADV 3EHC GLY C 0 UNP Q7CRD4 EXPRESSION TAG SEQADV 3EHC GLY D 0 UNP Q7CRD4 EXPRESSION TAG SEQRES 1 A 128 GLY MSE GLN THR LEU ASN ASP ILE TYR LEU ALA TYR LEU SEQRES 2 A 128 ASP SER LEU ASN HIS GLN ALA PHE ASP GLU LEU GLY THR SEQRES 3 A 128 PHE VAL ASP ASP ASN VAL GLU HIS ASN GLY ARG PRO PHE SEQRES 4 A 128 GLY LEU SER GLY TYR ARG ASP MSE LEU VAL LYS ASP PHE SEQRES 5 A 128 ALA ASP ILE PRO ASP LEU ARG PHE GLU ALA GLU ILE LEU SEQRES 6 A 128 VAL SER ASP ALA THR ARG LEU ALA ALA ARG LEU PHE PHE SEQRES 7 A 128 ASP CYS THR PRO LYS SER ILE PHE MSE ASP LEU PRO VAL SEQRES 8 A 128 ASN GLY ARG ARG VAL GLN PHE CYS GLU HIS VAL PHE TYR SEQRES 9 A 128 ASP PHE GLU GLN ALA LYS ILE ARG ARG VAL TRP SER VAL SEQRES 10 A 128 LEU ASP LYS VAL ALA ILE GLU ARG GLN LEU GLY SEQRES 1 B 128 GLY MSE GLN THR LEU ASN ASP ILE TYR LEU ALA TYR LEU SEQRES 2 B 128 ASP SER LEU ASN HIS GLN ALA PHE ASP GLU LEU GLY THR SEQRES 3 B 128 PHE VAL ASP ASP ASN VAL GLU HIS ASN GLY ARG PRO PHE SEQRES 4 B 128 GLY LEU SER GLY TYR ARG ASP MSE LEU VAL LYS ASP PHE SEQRES 5 B 128 ALA ASP ILE PRO ASP LEU ARG PHE GLU ALA GLU ILE LEU SEQRES 6 B 128 VAL SER ASP ALA THR ARG LEU ALA ALA ARG LEU PHE PHE SEQRES 7 B 128 ASP CYS THR PRO LYS SER ILE PHE MSE ASP LEU PRO VAL SEQRES 8 B 128 ASN GLY ARG ARG VAL GLN PHE CYS GLU HIS VAL PHE TYR SEQRES 9 B 128 ASP PHE GLU GLN ALA LYS ILE ARG ARG VAL TRP SER VAL SEQRES 10 B 128 LEU ASP LYS VAL ALA ILE GLU ARG GLN LEU GLY SEQRES 1 C 128 GLY MSE GLN THR LEU ASN ASP ILE TYR LEU ALA TYR LEU SEQRES 2 C 128 ASP SER LEU ASN HIS GLN ALA PHE ASP GLU LEU GLY THR SEQRES 3 C 128 PHE VAL ASP ASP ASN VAL GLU HIS ASN GLY ARG PRO PHE SEQRES 4 C 128 GLY LEU SER GLY TYR ARG ASP MSE LEU VAL LYS ASP PHE SEQRES 5 C 128 ALA ASP ILE PRO ASP LEU ARG PHE GLU ALA GLU ILE LEU SEQRES 6 C 128 VAL SER ASP ALA THR ARG LEU ALA ALA ARG LEU PHE PHE SEQRES 7 C 128 ASP CYS THR PRO LYS SER ILE PHE MSE ASP LEU PRO VAL SEQRES 8 C 128 ASN GLY ARG ARG VAL GLN PHE CYS GLU HIS VAL PHE TYR SEQRES 9 C 128 ASP PHE GLU GLN ALA LYS ILE ARG ARG VAL TRP SER VAL SEQRES 10 C 128 LEU ASP LYS VAL ALA ILE GLU ARG GLN LEU GLY SEQRES 1 D 128 GLY MSE GLN THR LEU ASN ASP ILE TYR LEU ALA TYR LEU SEQRES 2 D 128 ASP SER LEU ASN HIS GLN ALA PHE ASP GLU LEU GLY THR SEQRES 3 D 128 PHE VAL ASP ASP ASN VAL GLU HIS ASN GLY ARG PRO PHE SEQRES 4 D 128 GLY LEU SER GLY TYR ARG ASP MSE LEU VAL LYS ASP PHE SEQRES 5 D 128 ALA ASP ILE PRO ASP LEU ARG PHE GLU ALA GLU ILE LEU SEQRES 6 D 128 VAL SER ASP ALA THR ARG LEU ALA ALA ARG LEU PHE PHE SEQRES 7 D 128 ASP CYS THR PRO LYS SER ILE PHE MSE ASP LEU PRO VAL SEQRES 8 D 128 ASN GLY ARG ARG VAL GLN PHE CYS GLU HIS VAL PHE TYR SEQRES 9 D 128 ASP PHE GLU GLN ALA LYS ILE ARG ARG VAL TRP SER VAL SEQRES 10 D 128 LEU ASP LYS VAL ALA ILE GLU ARG GLN LEU GLY MODRES 3EHC MSE A 1 MET SELENOMETHIONINE MODRES 3EHC MSE A 46 MET SELENOMETHIONINE MODRES 3EHC MSE A 86 MET SELENOMETHIONINE MODRES 3EHC MSE B 1 MET SELENOMETHIONINE MODRES 3EHC MSE B 46 MET SELENOMETHIONINE MODRES 3EHC MSE B 86 MET SELENOMETHIONINE MODRES 3EHC MSE C 1 MET SELENOMETHIONINE MODRES 3EHC MSE C 46 MET SELENOMETHIONINE MODRES 3EHC MSE C 86 MET SELENOMETHIONINE MODRES 3EHC MSE D 46 MET SELENOMETHIONINE MODRES 3EHC MSE D 86 MET SELENOMETHIONINE HET MSE A 1 6 HET MSE A 46 8 HET MSE A 86 8 HET MSE B 1 8 HET MSE B 46 8 HET MSE B 86 8 HET MSE C 1 5 HET MSE C 46 8 HET MSE C 86 8 HET MSE D 46 8 HET MSE D 86 8 HET SO4 A 128 5 HET SO4 A 129 5 HET SO4 A 130 5 HET SO4 B 128 5 HET SO4 C 128 5 HET SO4 C 129 5 HET SO4 C 130 5 HET GOL C 131 6 HET SO4 D 128 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 5 SO4 8(O4 S 2-) FORMUL 12 GOL C3 H8 O3 FORMUL 14 HOH *481(H2 O) HELIX 1 1 THR A 3 HIS A 17 1 15 HELIX 2 2 ALA A 19 THR A 25 5 7 HELIX 3 3 PHE A 38 ILE A 54 1 17 HELIX 4 4 ASP A 118 GLY A 127 1 10 HELIX 5 5 THR B 3 HIS B 17 1 15 HELIX 6 6 ALA B 19 THR B 25 5 7 HELIX 7 7 PHE B 38 ILE B 54 1 17 HELIX 8 8 ASP B 118 GLY B 127 1 10 HELIX 9 9 THR C 3 HIS C 17 1 15 HELIX 10 10 ALA C 19 THR C 25 5 7 HELIX 11 11 PHE C 38 ILE C 54 1 17 HELIX 12 12 ASP C 118 GLY C 127 1 10 HELIX 13 13 THR D 3 HIS D 17 1 15 HELIX 14 14 ALA D 19 THR D 25 5 7 HELIX 15 15 PHE D 38 ILE D 54 1 17 HELIX 16 16 ASP D 118 GLY D 127 1 10 SHEET 1 A 5 VAL A 27 HIS A 33 0 SHEET 2 A 5 LYS A 109 LEU A 117 1 O ILE A 110 N ASP A 28 SHEET 3 A 5 VAL A 95 GLU A 106 -1 N ASP A 104 O ARG A 111 SHEET 4 A 5 ARG A 70 CYS A 79 -1 N CYS A 79 O VAL A 95 SHEET 5 A 5 ALA A 61 SER A 66 -1 N GLU A 62 O ARG A 74 SHEET 1 B 2 ILE A 84 PHE A 85 0 SHEET 2 B 2 LEU A 88 PRO A 89 -1 O LEU A 88 N PHE A 85 SHEET 1 C 5 VAL B 27 HIS B 33 0 SHEET 2 C 5 LYS B 109 LEU B 117 1 O ILE B 110 N ASP B 28 SHEET 3 C 5 VAL B 95 GLU B 106 -1 N ASP B 104 O ARG B 111 SHEET 4 C 5 ARG B 70 CYS B 79 -1 N CYS B 79 O VAL B 95 SHEET 5 C 5 ALA B 61 SER B 66 -1 N GLU B 62 O ARG B 74 SHEET 1 D 2 ILE B 84 PHE B 85 0 SHEET 2 D 2 LEU B 88 PRO B 89 -1 O LEU B 88 N PHE B 85 SHEET 1 E 5 VAL C 27 HIS C 33 0 SHEET 2 E 5 LYS C 109 LEU C 117 1 O ILE C 110 N ASP C 28 SHEET 3 E 5 VAL C 95 GLU C 106 -1 N ASP C 104 O ARG C 111 SHEET 4 E 5 ARG C 70 CYS C 79 -1 N CYS C 79 O VAL C 95 SHEET 5 E 5 ALA C 61 SER C 66 -1 N GLU C 62 O ARG C 74 SHEET 1 F 2 ILE C 84 PHE C 85 0 SHEET 2 F 2 LEU C 88 PRO C 89 -1 O LEU C 88 N PHE C 85 SHEET 1 G 5 VAL D 27 HIS D 33 0 SHEET 2 G 5 LYS D 109 LEU D 117 1 O ILE D 110 N ASP D 28 SHEET 3 G 5 VAL D 95 GLU D 106 -1 N ASP D 104 O ARG D 111 SHEET 4 G 5 ARG D 70 CYS D 79 -1 N LEU D 71 O TYR D 103 SHEET 5 G 5 ALA D 61 SER D 66 -1 N VAL D 65 O ALA D 72 SHEET 1 H 2 ILE D 84 PHE D 85 0 SHEET 2 H 2 LEU D 88 PRO D 89 -1 O LEU D 88 N PHE D 85 LINK C MSE A 1 N GLN A 2 1555 1555 1.34 LINK C ASP A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N LEU A 47 1555 1555 1.33 LINK C PHE A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N ASP A 87 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK C ASP B 45 N MSE B 46 1555 1555 1.33 LINK C MSE B 46 N LEU B 47 1555 1555 1.33 LINK C PHE B 85 N MSE B 86 1555 1555 1.34 LINK C MSE B 86 N ASP B 87 1555 1555 1.34 LINK C MSE C 1 N GLN C 2 1555 1555 1.34 LINK C ASP C 45 N MSE C 46 1555 1555 1.33 LINK C MSE C 46 N LEU C 47 1555 1555 1.32 LINK C PHE C 85 N MSE C 86 1555 1555 1.33 LINK C MSE C 86 N ASP C 87 1555 1555 1.34 LINK C ASP D 45 N MSE D 46 1555 1555 1.33 LINK C MSE D 46 N LEU D 47 1555 1555 1.33 LINK C PHE D 85 N MSE D 86 1555 1555 1.34 LINK C MSE D 86 N ASP D 87 1555 1555 1.34 SITE 1 AC1 2 ASN A 91 ARG A 93 SITE 1 AC2 5 ASP A 28 GLU A 106 ARG A 111 HOH A 218 SITE 2 AC2 5 GLY D 127 SITE 1 AC3 3 ASN A 34 ARG A 36 ARG B 124 SITE 1 AC4 2 ASP B 28 ARG B 111 SITE 1 AC5 3 PRO C 89 ASN C 91 ARG C 93 SITE 1 AC6 4 ASN C 30 GLU C 106 ARG C 111 HOH C 346 SITE 1 AC7 3 ASN C 34 ARG C 36 ARG D 124 SITE 1 AC8 6 GLU C 62 ARG C 74 HOH C 276 HOH C 298 SITE 2 AC8 6 ARG D 70 TRP D 114 SITE 1 AC9 2 ASN D 30 ARG D 111 CRYST1 52.100 114.060 137.990 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007247 0.00000 HETATM 1 N MSE A 1 12.459 32.454 -9.192 1.00 64.94 N HETATM 2 CA MSE A 1 12.328 31.255 -10.087 1.00 63.70 C HETATM 3 C MSE A 1 10.835 30.938 -10.460 1.00 63.35 C HETATM 4 O MSE A 1 9.972 30.747 -9.585 1.00 61.56 O HETATM 5 CB MSE A 1 13.048 30.056 -9.440 1.00 64.59 C HETATM 6 CG MSE A 1 14.572 30.252 -9.286 1.00 61.51 C