HEADER TRANSFERASE 12-SEP-08 3EHH TITLE CRYSTAL STRUCTURE OF DESKC-H188V IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR KINASE (YOCF PROTEIN); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ENTIRE CYTOPLASMIC REGION; COMPND 5 SYNONYM: DESK HISTIDINE KINASE; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YOCF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE32 KEYWDS FOUR-HELIX BUNDLE, GHL ATPASE DOMAIN, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ALBANESI,P.M.ALZARI,A.BUSCHIAZZO REVDAT 3 10-NOV-21 3EHH 1 REMARK SEQADV LINK REVDAT 2 28-JUL-10 3EHH 1 JRNL REVDAT 1 15-SEP-09 3EHH 0 JRNL AUTH D.ALBANESI,M.MARTIN,F.TRAJTENBERG,M.C.MANSILLA,A.HAOUZ, JRNL AUTH 2 P.M.ALZARI,D.DE MENDOZA,A.BUSCHIAZZO JRNL TITL STRUCTURAL PLASTICITY AND CATALYSIS REGULATION OF A JRNL TITL 2 THERMOSENSOR HISTIDINE KINASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 16185 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805278 JRNL DOI 10.1073/PNAS.0906699106 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 35159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1756 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3021 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : 2.86000 REMARK 3 B33 (A**2) : -2.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3171 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2183 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4258 ; 1.743 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5371 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 6.042 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;40.322 ;25.255 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 647 ;17.185 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.021 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3412 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 565 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 979 ; 1.069 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 402 ; 0.232 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1575 ; 1.780 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 582 ; 2.811 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 520 ; 4.815 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 177 A 241 4 REMARK 3 1 B 177 B 241 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 883 ; 0.310 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 883 ; 1.540 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 242 A 367 4 REMARK 3 1 B 242 B 367 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 1554 ; 0.250 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 1554 ; 1.860 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 241 REMARK 3 RESIDUE RANGE : B 174 B 241 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8190 45.9800 46.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.0826 T22: 0.2056 REMARK 3 T33: 0.0489 T12: 0.0192 REMARK 3 T13: 0.0019 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 2.2296 L22: 5.8095 REMARK 3 L33: 4.1041 L12: 0.5348 REMARK 3 L13: 1.1645 L23: -0.7806 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.0145 S13: -0.2861 REMARK 3 S21: -0.0400 S22: 0.1211 S23: 0.0247 REMARK 3 S31: 0.4606 S32: 0.0688 S33: -0.1295 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 242 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5690 58.6320 25.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.1281 T22: 0.2246 REMARK 3 T33: 0.0640 T12: -0.0345 REMARK 3 T13: 0.0561 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 7.5098 L22: 1.6417 REMARK 3 L33: 10.4314 L12: 0.4171 REMARK 3 L13: -0.9758 L23: -3.6418 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: 0.3461 S13: -0.1724 REMARK 3 S21: 0.0270 S22: 0.0712 S23: 0.1047 REMARK 3 S31: 0.4873 S32: -0.3138 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 242 B 367 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0010 54.1660 70.2200 REMARK 3 T TENSOR REMARK 3 T11: 0.0117 T22: 0.1029 REMARK 3 T33: 0.0059 T12: -0.0043 REMARK 3 T13: -0.0020 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.1728 L22: 1.5406 REMARK 3 L33: 10.4433 L12: 0.6260 REMARK 3 L13: 3.0555 L23: 1.6733 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: 0.1929 S13: -0.1339 REMARK 3 S21: -0.0981 S22: 0.0921 S23: -0.0391 REMARK 3 S31: 0.0790 S32: 0.0401 S33: -0.1730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B ANISOU REMARK 3 RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 4 REMARK 4 3EHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9795, 0.9756 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) CHANNEL-CUT REMARK 200 OPTICS : SILICON TOROIDAL MIRROR COATED REMARK 200 WITH RHODIUM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.097 REMARK 200 RESOLUTION RANGE LOW (A) : 41.345 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 4.9610 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : 0.37300 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, DM 6.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, CACL2, ADP, PH 9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.37150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.15150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.15150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.37150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 153 REMARK 465 ARG A 154 REMARK 465 LYS A 155 REMARK 465 GLU A 156 REMARK 465 ARG A 157 REMARK 465 GLU A 158 REMARK 465 ARG A 159 REMARK 465 LEU A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 465 LYS A 163 REMARK 465 LEU A 164 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 GLU A 327 REMARK 465 GLU A 328 REMARK 465 ASN A 329 REMARK 465 SER A 330 REMARK 465 PHE A 331 REMARK 465 SER A 332 REMARK 465 LYS A 333 REMARK 465 GLY A 334 REMARK 465 ASN A 368 REMARK 465 SER A 369 REMARK 465 LYS A 370 REMARK 465 GLY B 153 REMARK 465 ARG B 154 REMARK 465 LYS B 155 REMARK 465 GLU B 156 REMARK 465 ARG B 157 REMARK 465 GLU B 158 REMARK 465 ARG B 159 REMARK 465 LEU B 160 REMARK 465 GLU B 161 REMARK 465 GLU B 162 REMARK 465 LYS B 163 REMARK 465 LEU B 164 REMARK 465 GLU B 165 REMARK 465 ASP B 166 REMARK 465 ALA B 167 REMARK 465 ASN B 168 REMARK 465 GLU B 169 REMARK 465 ARG B 170 REMARK 465 PHE B 331 REMARK 465 SER B 332 REMARK 465 LYS B 333 REMARK 465 GLY B 334 REMARK 465 ASN B 368 REMARK 465 SER B 369 REMARK 465 LYS B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 169 CB CG CD OE1 OE2 REMARK 470 ARG A 170 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA A 172 CB REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 HIS A 335 CB CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 171 CG1 CG2 CD1 REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 GLU B 328 CB CG CD OE1 OE2 REMARK 470 ASN B 329 CB CG OD1 ND2 REMARK 470 SER B 330 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 304 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 304 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 212 80.71 -156.64 REMARK 500 TRP A 311 -107.17 59.20 REMARK 500 ALA B 172 -71.42 66.69 REMARK 500 ASP B 212 61.22 -164.18 REMARK 500 TRP B 311 -111.40 56.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 14 O REMARK 620 2 HOH A 64 O 94.7 REMARK 620 3 GLU A 289 OE2 91.5 82.4 REMARK 620 4 ASN A 293 OD1 159.5 105.6 88.4 REMARK 620 5 ADP A2500 O3B 79.9 109.3 165.9 95.8 REMARK 620 6 ADP A2500 O2A 76.6 168.2 89.8 82.9 77.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 43 O REMARK 620 2 HOH B 63 O 102.1 REMARK 620 3 GLU B 289 OE2 93.2 103.6 REMARK 620 4 ASN B 293 OD1 154.7 101.3 90.6 REMARK 620 5 ADP B3500 O3B 77.2 91.3 163.7 92.8 REMARK 620 6 ADP B3500 O2A 70.8 163.8 91.5 84.2 73.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 2500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 3500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EHF RELATED DB: PDB REMARK 900 RELATED ID: 3EHG RELATED DB: PDB REMARK 900 RELATED ID: 3EHJ RELATED DB: PDB DBREF 3EHH A 154 370 UNP O34757 O34757_BACSU 154 370 DBREF 3EHH B 154 370 UNP O34757 O34757_BACSU 154 370 SEQADV 3EHH GLY A 153 UNP O34757 EXPRESSION TAG SEQADV 3EHH MSE A 183 UNP O34757 ILE 183 ENGINEERED MUTATION SEQADV 3EHH VAL A 188 UNP O34757 HIS 188 ENGINEERED MUTATION SEQADV 3EHH MSE A 198 UNP O34757 ILE 198 ENGINEERED MUTATION SEQADV 3EHH GLY B 153 UNP O34757 EXPRESSION TAG SEQADV 3EHH MSE B 183 UNP O34757 ILE 183 ENGINEERED MUTATION SEQADV 3EHH VAL B 188 UNP O34757 HIS 188 ENGINEERED MUTATION SEQADV 3EHH MSE B 198 UNP O34757 ILE 198 ENGINEERED MUTATION SEQRES 1 A 218 GLY ARG LYS GLU ARG GLU ARG LEU GLU GLU LYS LEU GLU SEQRES 2 A 218 ASP ALA ASN GLU ARG ILE ALA GLU LEU VAL LYS LEU GLU SEQRES 3 A 218 GLU ARG GLN ARG MSE ALA ARG ASP LEU VAL ASP THR LEU SEQRES 4 A 218 GLY GLN LYS LEU SER LEU MSE GLY LEU LYS SER ASP LEU SEQRES 5 A 218 ALA ARG LYS LEU ILE TYR LYS ASP PRO GLU GLN ALA ALA SEQRES 6 A 218 ARG GLU LEU LYS SER VAL GLN GLN THR ALA ARG THR SER SEQRES 7 A 218 LEU ASN GLU VAL ARG LYS ILE VAL SER SER MSE LYS GLY SEQRES 8 A 218 ILE ARG LEU LYS ASP GLU LEU ILE ASN ILE LYS GLN ILE SEQRES 9 A 218 LEU GLU ALA ALA ASP ILE MSE PHE ILE TYR GLU GLU GLU SEQRES 10 A 218 LYS TRP PRO GLU ASN ILE SER LEU LEU ASN GLU ASN ILE SEQRES 11 A 218 LEU SER MSE CYS LEU LYS GLU ALA VAL THR ASN VAL VAL SEQRES 12 A 218 LYS HIS SER GLN ALA LYS THR CYS ARG VAL ASP ILE GLN SEQRES 13 A 218 GLN LEU TRP LYS GLU VAL VAL ILE THR VAL SER ASP ASP SEQRES 14 A 218 GLY THR PHE LYS GLY GLU GLU ASN SER PHE SER LYS GLY SEQRES 15 A 218 HIS GLY LEU LEU GLY MSE ARG GLU ARG LEU GLU PHE ALA SEQRES 16 A 218 ASN GLY SER LEU HIS ILE ASP THR GLU ASN GLY THR LYS SEQRES 17 A 218 LEU THR MSE ALA ILE PRO ASN ASN SER LYS SEQRES 1 B 218 GLY ARG LYS GLU ARG GLU ARG LEU GLU GLU LYS LEU GLU SEQRES 2 B 218 ASP ALA ASN GLU ARG ILE ALA GLU LEU VAL LYS LEU GLU SEQRES 3 B 218 GLU ARG GLN ARG MSE ALA ARG ASP LEU VAL ASP THR LEU SEQRES 4 B 218 GLY GLN LYS LEU SER LEU MSE GLY LEU LYS SER ASP LEU SEQRES 5 B 218 ALA ARG LYS LEU ILE TYR LYS ASP PRO GLU GLN ALA ALA SEQRES 6 B 218 ARG GLU LEU LYS SER VAL GLN GLN THR ALA ARG THR SER SEQRES 7 B 218 LEU ASN GLU VAL ARG LYS ILE VAL SER SER MSE LYS GLY SEQRES 8 B 218 ILE ARG LEU LYS ASP GLU LEU ILE ASN ILE LYS GLN ILE SEQRES 9 B 218 LEU GLU ALA ALA ASP ILE MSE PHE ILE TYR GLU GLU GLU SEQRES 10 B 218 LYS TRP PRO GLU ASN ILE SER LEU LEU ASN GLU ASN ILE SEQRES 11 B 218 LEU SER MSE CYS LEU LYS GLU ALA VAL THR ASN VAL VAL SEQRES 12 B 218 LYS HIS SER GLN ALA LYS THR CYS ARG VAL ASP ILE GLN SEQRES 13 B 218 GLN LEU TRP LYS GLU VAL VAL ILE THR VAL SER ASP ASP SEQRES 14 B 218 GLY THR PHE LYS GLY GLU GLU ASN SER PHE SER LYS GLY SEQRES 15 B 218 HIS GLY LEU LEU GLY MSE ARG GLU ARG LEU GLU PHE ALA SEQRES 16 B 218 ASN GLY SER LEU HIS ILE ASP THR GLU ASN GLY THR LYS SEQRES 17 B 218 LEU THR MSE ALA ILE PRO ASN ASN SER LYS MODRES 3EHH MSE A 183 MET SELENOMETHIONINE MODRES 3EHH MSE A 198 MET SELENOMETHIONINE MODRES 3EHH MSE A 241 MET SELENOMETHIONINE MODRES 3EHH MSE A 263 MET SELENOMETHIONINE MODRES 3EHH MSE A 285 MET SELENOMETHIONINE MODRES 3EHH MSE A 340 MET SELENOMETHIONINE MODRES 3EHH MSE A 363 MET SELENOMETHIONINE MODRES 3EHH MSE B 183 MET SELENOMETHIONINE MODRES 3EHH MSE B 198 MET SELENOMETHIONINE MODRES 3EHH MSE B 241 MET SELENOMETHIONINE MODRES 3EHH MSE B 263 MET SELENOMETHIONINE MODRES 3EHH MSE B 285 MET SELENOMETHIONINE MODRES 3EHH MSE B 340 MET SELENOMETHIONINE MODRES 3EHH MSE B 363 MET SELENOMETHIONINE HET MSE A 183 8 HET MSE A 198 8 HET MSE A 241 8 HET MSE A 263 8 HET MSE A 285 16 HET MSE A 340 13 HET MSE A 363 16 HET MSE B 183 8 HET MSE B 198 8 HET MSE B 241 8 HET MSE B 263 8 HET MSE B 285 16 HET MSE B 340 8 HET MSE B 363 13 HET ADP A2500 27 HET CA A 1 1 HET ADP B3500 27 HET CA B 2 1 HETNAM MSE SELENOMETHIONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *103(H2 O) HELIX 1 1 ARG A 170 ILE A 209 1 40 HELIX 2 2 ASP A 212 LYS A 236 1 25 HELIX 3 3 ARG A 245 ALA A 260 1 16 HELIX 4 4 SER A 276 SER A 298 1 23 HELIX 5 5 HIS A 335 ALA A 347 1 13 HELIX 6 6 LYS B 176 LYS B 207 1 32 HELIX 7 7 ASP B 212 LYS B 236 1 25 HELIX 8 8 ARG B 245 ALA B 260 1 16 HELIX 9 9 SER B 276 SER B 298 1 23 HELIX 10 10 HIS B 335 ALA B 347 1 13 SHEET 1 A 5 MSE A 263 ILE A 265 0 SHEET 2 A 5 THR A 302 LEU A 310 1 O CYS A 303 N MSE A 263 SHEET 3 A 5 GLU A 313 ASP A 320 -1 O VAL A 315 N GLN A 308 SHEET 4 A 5 THR A 359 PRO A 366 -1 O MSE A 363 N ILE A 316 SHEET 5 A 5 SER A 350 ASP A 354 -1 N ASP A 354 O LYS A 360 SHEET 1 B 5 MSE B 263 ILE B 265 0 SHEET 2 B 5 THR B 302 LEU B 310 1 O CYS B 303 N MSE B 263 SHEET 3 B 5 GLU B 313 ASP B 320 -1 O SER B 319 N ARG B 304 SHEET 4 B 5 THR B 359 PRO B 366 -1 O MSE B 363 N ILE B 316 SHEET 5 B 5 SER B 350 ASP B 354 -1 N HIS B 352 O THR B 362 LINK C ARG A 182 N MSE A 183 1555 1555 1.35 LINK C MSE A 183 N ALA A 184 1555 1555 1.33 LINK C LEU A 197 N MSE A 198 1555 1555 1.32 LINK C MSE A 198 N GLY A 199 1555 1555 1.33 LINK C SER A 240 N MSE A 241 1555 1555 1.34 LINK C MSE A 241 N LYS A 242 1555 1555 1.31 LINK C ILE A 262 N MSE A 263 1555 1555 1.32 LINK C MSE A 263 N PHE A 264 1555 1555 1.32 LINK C SER A 284 N AMSE A 285 1555 1555 1.32 LINK C SER A 284 N BMSE A 285 1555 1555 1.32 LINK C AMSE A 285 N CYS A 286 1555 1555 1.32 LINK C BMSE A 285 N CYS A 286 1555 1555 1.32 LINK C GLY A 339 N MSE A 340 1555 1555 1.34 LINK C MSE A 340 N ARG A 341 1555 1555 1.34 LINK C THR A 362 N AMSE A 363 1555 1555 1.32 LINK C THR A 362 N BMSE A 363 1555 1555 1.33 LINK C AMSE A 363 N ALA A 364 1555 1555 1.32 LINK C BMSE A 363 N ALA A 364 1555 1555 1.34 LINK C ARG B 182 N MSE B 183 1555 1555 1.32 LINK C MSE B 183 N ALA B 184 1555 1555 1.33 LINK C LEU B 197 N MSE B 198 1555 1555 1.32 LINK C MSE B 198 N GLY B 199 1555 1555 1.34 LINK C SER B 240 N MSE B 241 1555 1555 1.33 LINK C MSE B 241 N LYS B 242 1555 1555 1.32 LINK C ILE B 262 N MSE B 263 1555 1555 1.32 LINK C MSE B 263 N PHE B 264 1555 1555 1.33 LINK C SER B 284 N AMSE B 285 1555 1555 1.33 LINK C SER B 284 N BMSE B 285 1555 1555 1.33 LINK C AMSE B 285 N CYS B 286 1555 1555 1.33 LINK C BMSE B 285 N CYS B 286 1555 1555 1.32 LINK C GLY B 339 N MSE B 340 1555 1555 1.34 LINK C MSE B 340 N ARG B 341 1555 1555 1.33 LINK C THR B 362 N MSE B 363 1555 1555 1.32 LINK C MSE B 363 N ALA B 364 1555 1555 1.33 LINK CA CA A 1 O HOH A 14 1555 1555 2.32 LINK CA CA A 1 O HOH A 64 1555 1555 2.29 LINK CA CA A 1 OE2 GLU A 289 1555 1555 2.29 LINK CA CA A 1 OD1 ASN A 293 1555 1555 2.29 LINK CA CA A 1 O3B ADP A2500 1555 1555 2.41 LINK CA CA A 1 O2A ADP A2500 1555 1555 2.23 LINK CA CA B 2 O HOH B 43 1555 1555 2.35 LINK CA CA B 2 O HOH B 63 1555 1555 2.28 LINK CA CA B 2 OE2 GLU B 289 1555 1555 2.30 LINK CA CA B 2 OD1 ASN B 293 1555 1555 2.34 LINK CA CA B 2 O3B ADP B3500 1555 1555 2.33 LINK CA CA B 2 O2A ADP B3500 1555 1555 2.15 SITE 1 AC1 17 CA A 1 HOH A 13 HOH A 14 HOH A 19 SITE 2 AC1 17 HOH A 69 GLU A 289 ASN A 293 HIS A 297 SITE 3 AC1 17 SER A 298 ASP A 320 THR A 323 PHE A 324 SITE 4 AC1 17 LYS A 325 GLY A 326 GLY A 336 LEU A 337 SITE 5 AC1 17 THR A 359 SITE 1 AC2 5 HOH A 14 HOH A 64 GLU A 289 ASN A 293 SITE 2 AC2 5 ADP A2500 SITE 1 AC3 18 CA B 2 HOH B 43 HOH B 44 HOH B 45 SITE 2 AC3 18 HOH B 48 GLU B 289 ASN B 293 HIS B 297 SITE 3 AC3 18 SER B 298 ASP B 320 THR B 323 PHE B 324 SITE 4 AC3 18 LYS B 325 GLY B 326 HIS B 335 GLY B 336 SITE 5 AC3 18 LEU B 337 THR B 359 SITE 1 AC4 5 HOH B 43 HOH B 63 GLU B 289 ASN B 293 SITE 2 AC4 5 ADP B3500 CRYST1 34.743 124.050 138.303 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007231 0.00000