HEADER SUGAR BINDING PROTEIN 18-SEP-08 3EJN TITLE CRYSTAL STRUCTURE OF A SUSD HOMOLOG (BF3025) FROM BACTEROIDES FRAGILIS TITLE 2 NCTC 9343 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS NCTC 9343; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 GENE: YP_212639.1, BF3025; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS SUSD HOMOLOG, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, SUGAR BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3EJN 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3EJN 1 REMARK LINK REVDAT 4 25-OCT-17 3EJN 1 REMARK REVDAT 3 28-JUL-10 3EJN 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3EJN 1 VERSN REVDAT 1 30-SEP-08 3EJN 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SUSD HOMOLOG (YP_212639.1) FROM JRNL TITL 2 BACTEROIDES FRAGILIS NCTC 9343 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 81071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4146 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5233 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 278 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.12000 REMARK 3 B22 (A**2) : -4.12000 REMARK 3 B33 (A**2) : 8.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.013 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.013 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3835 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2600 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5208 ; 1.786 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6303 ; 1.403 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 4.152 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;35.000 ;24.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 625 ;10.891 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.801 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4358 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 832 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2288 ; 1.472 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 931 ; 0.315 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3682 ; 2.274 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1547 ; 3.538 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1511 ; 4.492 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. MG, FMT, AND PG4 MOLECULES FROM THE CRYSTALLIZATION/CRYO REMARK 3 SOLUTION ARE MODELED. REMARK 3 3. THE DATASET IS TWINNED WITH THE OPERATOR "-H-K, K, -L". REMARK 3 THE FINAL REFINED TWIN FRACTION IS 0.3235 REMARK 4 REMARK 4 3EJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97876,0.97822 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.074 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM FORMATE, 18.5% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 83.49500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.20586 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.31333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 83.49500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 48.20586 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.31333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 83.49500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 48.20586 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.31333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 96.41172 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.62667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 96.41172 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.62667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 96.41172 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.62667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 888 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 961 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 ASN A 19 REMARK 465 LEU A 20 REMARK 465 GLU A 21 REMARK 465 GLU A 22 REMARK 465 MSE A 23 REMARK 465 ASN A 24 REMARK 465 ILE A 25 REMARK 465 ASP A 26 REMARK 465 PRO A 27 REMARK 465 ASP A 28 REMARK 465 ASN A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 GLY A 133 REMARK 465 GLU A 134 REMARK 465 LYS A 135 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 ILE A 138 REMARK 465 GLU A 312 REMARK 465 GLY A 313 REMARK 465 THR A 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 73 CD CE NZ REMARK 470 LYS A 90 CD CE NZ REMARK 470 LYS A 132 CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 ASP A 305 CG OD1 OD2 REMARK 470 ILE A 308 CG1 CG2 CD1 REMARK 470 LYS A 479 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 264 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 433 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 471 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 52 -126.38 47.10 REMARK 500 THR A 75 -95.49 -129.37 REMARK 500 TYR A 127 -76.77 -140.18 REMARK 500 GLN A 239 124.64 -37.68 REMARK 500 TYR A 303 -19.98 -39.42 REMARK 500 SER A 304 82.44 -61.46 REMARK 500 VAL A 328 -95.19 64.38 REMARK 500 ALA A 375 69.36 -112.98 REMARK 500 ASP A 397 112.14 -37.76 REMARK 500 ASN A 424 -117.31 51.71 REMARK 500 ARG A 450 -174.40 -178.31 REMARK 500 ASN A 477 46.28 -96.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 1 REMARK 610 PG4 A 2 REMARK 610 PG4 A 3 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 8 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 491 O REMARK 620 2 HOH A 492 O 88.2 REMARK 620 3 HOH A 493 O 91.4 84.4 REMARK 620 4 HOH A 494 O 176.6 94.0 91.4 REMARK 620 5 HOH A 495 O 84.9 170.8 89.8 93.3 REMARK 620 6 HOH A 496 O 85.1 88.7 172.4 92.3 96.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390167 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 18-490) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EJN A 18 490 UNP Q5LB02 Q5LB02_BACFN 18 490 SEQADV 3EJN GLY A 17 UNP Q5LB02 EXPRESSION TAG SEQRES 1 A 474 GLY GLY ASN LEU GLU GLU MSE ASN ILE ASP PRO ASP ASN SEQRES 2 A 474 ALA THR GLN THR HIS PRO LYS LEU LEU LEU THR GLN ILE SEQRES 3 A 474 CYS MSE ASN ALA PHE LYS ARG GLY THR ASP GLY MSE TYR SEQRES 4 A 474 ALA THR LYS LYS VAL ILE GLN ALA ASP GLY GLU SER ALA SEQRES 5 A 474 ASP GLN TYR TYR LYS TRP THR ARG GLY SER PHE GLY TYR SEQRES 6 A 474 TYR ASP ASN LEU ARG ASN VAL GLN LYS MSE GLY GLU GLU SEQRES 7 A 474 ALA GLU ARG VAL ASN ALA PRO VAL TYR THR ALA LEU THR SEQRES 8 A 474 LYS PHE PHE ARG ALA TYR TYR PHE TYR GLU LEU THR LEU SEQRES 9 A 474 ARG PHE GLY ASP ILE PRO TYR SER GLN ALA LEU LYS GLY SEQRES 10 A 474 GLU LYS GLU GLU ILE TYR THR PRO GLU TYR ASP ALA GLN SEQRES 11 A 474 GLU ASP VAL PHE ALA GLY ILE LEU GLN GLU LEU ARG GLU SEQRES 12 A 474 ALA ASP GLU ILE LEU ALA ASN ASP ALA SER VAL ILE ASP SEQRES 13 A 474 GLY ASP ILE ILE TYR ASN GLY ASN SER THR GLN TRP ARG SEQRES 14 A 474 LYS LEU ILE ASN SER PHE ARG LEU LYS VAL LEU MSE THR SEQRES 15 A 474 LEU SER ASN HIS THR THR VAL GLY ASN ILE ASN ILE ALA SEQRES 16 A 474 SER GLU PHE LYS ASN ILE ALA THR ASN SER PRO LEU MSE SEQRES 17 A 474 ASN SER LEU ALA ASP ASN GLY GLN LEU VAL TYR LEU ASP SEQRES 18 A 474 GLN GLN GLY ASN ARG TYR PRO GLN PHE ASN ALA GLN TRP SEQRES 19 A 474 SER GLY TYR TYR MSE ASP ASP THR PHE ILE GLN ARG MSE SEQRES 20 A 474 ARG GLU ARG ARG ASP PRO ARG LEU PHE ILE PHE SER ALA SEQRES 21 A 474 GLN THR ASN LYS GLY LYS THR GLU GLY LYS PRO ILE ASP SEQRES 22 A 474 ASP PHE SER SER TYR GLU GLY GLY ASP PRO ALA ALA PRO SEQRES 23 A 474 TYR SER ASP ALA ILE ILE LYS VAL SER GLU GLY THR ILE SEQRES 24 A 474 SER PRO ILE ASN ASP ARG PHE ARG THR ASP PRO ILE VAL SEQRES 25 A 474 GLU PRO THR MSE LEU MSE GLY TYR ALA GLU LEU GLN GLN SEQRES 26 A 474 ILE LEU ALA GLU ALA VAL VAL ARG GLY TRP ILE SER GLY SEQRES 27 A 474 ASN ALA GLN THR TYR TYR GLU LYS GLY ILE ARG ALA SER SEQRES 28 A 474 PHE SER PHE TYR GLU THR HIS ALA LYS ASP TYR ALA GLY SEQRES 29 A 474 TYR LEU ASN GLU ASN ALA VAL ALA GLN TYR LEU LYS GLU SEQRES 30 A 474 PRO LEU VAL ASP PHE THR GLN ALA SER GLY THR GLU GLU SEQRES 31 A 474 GLN ILE GLU ARG ILE ILE MSE GLN LYS TYR LEU VAL THR SEQRES 32 A 474 PHE TYR GLN GLY ASN TRP ASP SER PHE TYR GLU GLN LEU SEQRES 33 A 474 ARG THR GLY TYR PRO ASP PHE ARG ARG PRO ALA GLY THR SEQRES 34 A 474 GLU ILE PRO LYS ARG TRP MSE TYR PRO GLN GLY GLU TYR SEQRES 35 A 474 ASP ASN ASN GLY THR ASN VAL GLU THR ALA ILE THR ARG SEQRES 36 A 474 GLN PHE GLY ALA GLY ASN ASP LYS ILE ASN GLN ALA THR SEQRES 37 A 474 TRP TRP GLN LYS LYS SER MODRES 3EJN MSE A 44 MET SELENOMETHIONINE MODRES 3EJN MSE A 54 MET SELENOMETHIONINE MODRES 3EJN MSE A 91 MET SELENOMETHIONINE MODRES 3EJN MSE A 197 MET SELENOMETHIONINE MODRES 3EJN MSE A 224 MET SELENOMETHIONINE MODRES 3EJN MSE A 255 MET SELENOMETHIONINE MODRES 3EJN MSE A 263 MET SELENOMETHIONINE MODRES 3EJN MSE A 332 MET SELENOMETHIONINE MODRES 3EJN MSE A 334 MET SELENOMETHIONINE MODRES 3EJN MSE A 413 MET SELENOMETHIONINE MODRES 3EJN MSE A 452 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 54 8 HET MSE A 91 8 HET MSE A 197 8 HET MSE A 224 8 HET MSE A 255 13 HET MSE A 263 13 HET MSE A 332 8 HET MSE A 334 8 HET MSE A 413 13 HET MSE A 452 8 HET PG4 A 1 7 HET PG4 A 2 7 HET PG4 A 3 7 HET FMT A 4 3 HET FMT A 5 3 HET FMT A 6 3 HET FMT A 7 3 HET MG A 8 1 HETNAM MSE SELENOMETHIONINE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM FMT FORMIC ACID HETNAM MG MAGNESIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 PG4 3(C8 H18 O5) FORMUL 5 FMT 4(C H2 O2) FORMUL 9 MG MG 2+ FORMUL 10 HOH *493(H2 O) HELIX 1 1 PRO A 35 LYS A 48 1 14 HELIX 2 2 THR A 51 TYR A 55 5 5 HELIX 3 3 GLY A 80 ASN A 99 1 20 HELIX 4 4 ALA A 100 GLY A 123 1 24 HELIX 5 5 ALA A 145 ASN A 166 1 22 HELIX 6 6 ASN A 180 LEU A 199 1 20 HELIX 7 7 ILE A 210 SER A 221 1 12 HELIX 8 8 SER A 226 ASN A 230 5 5 HELIX 9 9 ASP A 256 ARG A 266 1 11 HELIX 10 10 ARG A 267 PRO A 269 5 3 HELIX 11 11 ARG A 270 SER A 275 1 6 HELIX 12 12 THR A 278 GLU A 284 1 7 HELIX 13 13 ASP A 290 TYR A 294 5 5 HELIX 14 14 ASP A 305 SER A 311 1 7 HELIX 15 15 ASN A 319 ARG A 323 5 5 HELIX 16 16 GLY A 335 ARG A 349 1 15 HELIX 17 17 ASN A 355 ALA A 375 1 21 HELIX 18 18 LYS A 376 LEU A 382 5 7 HELIX 19 19 ASN A 383 LEU A 391 1 9 HELIX 20 20 ASP A 397 ALA A 401 5 5 HELIX 21 21 GLY A 403 LEU A 417 1 15 HELIX 22 22 TRP A 425 GLY A 435 1 11 HELIX 23 23 PRO A 454 ASN A 461 1 8 HELIX 24 24 ASN A 461 GLY A 474 1 14 HELIX 25 25 THR A 484 LYS A 488 5 5 SHEET 1 A 2 VAL A 60 GLN A 62 0 SHEET 2 A 2 TYR A 253 MSE A 255 -1 O TYR A 254 N ILE A 61 SHEET 1 B 2 THR A 204 VAL A 205 0 SHEET 2 B 2 ILE A 208 ASN A 209 -1 O ILE A 208 N VAL A 205 SHEET 1 C 2 GLY A 231 LEU A 233 0 SHEET 2 C 2 THR A 331 MSE A 334 -1 O THR A 331 N LEU A 233 LINK C CYS A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N ASN A 45 1555 1555 1.32 LINK C GLY A 53 N MSE A 54 1555 1555 1.34 LINK C MSE A 54 N TYR A 55 1555 1555 1.33 LINK C LYS A 90 N MSE A 91 1555 1555 1.34 LINK C MSE A 91 N GLY A 92 1555 1555 1.33 LINK C LEU A 196 N MSE A 197 1555 1555 1.35 LINK C MSE A 197 N THR A 198 1555 1555 1.33 LINK C LEU A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N ASN A 225 1555 1555 1.34 LINK C TYR A 254 N MSE A 255 1555 1555 1.35 LINK C MSE A 255 N ASP A 256 1555 1555 1.34 LINK C ARG A 262 N MSE A 263 1555 1555 1.34 LINK C MSE A 263 N ARG A 264 1555 1555 1.33 LINK C THR A 331 N MSE A 332 1555 1555 1.32 LINK C MSE A 332 N LEU A 333 1555 1555 1.33 LINK C LEU A 333 N MSE A 334 1555 1555 1.35 LINK C MSE A 334 N GLY A 335 1555 1555 1.33 LINK C ILE A 412 N MSE A 413 1555 1555 1.32 LINK C MSE A 413 N GLN A 414 1555 1555 1.34 LINK C TRP A 451 N MSE A 452 1555 1555 1.35 LINK C MSE A 452 N TYR A 453 1555 1555 1.32 LINK MG MG A 8 O HOH A 491 1555 1555 2.08 LINK MG MG A 8 O HOH A 492 1555 1555 2.23 LINK MG MG A 8 O HOH A 493 1555 1555 1.94 LINK MG MG A 8 O HOH A 494 1555 1555 2.05 LINK MG MG A 8 O HOH A 495 1555 1555 2.04 LINK MG MG A 8 O HOH A 496 1555 1555 2.11 CISPEP 1 TYR A 436 PRO A 437 0 -7.19 SITE 1 AC1 9 GLY A 77 SER A 78 ARG A 121 TRP A 425 SITE 2 AC1 9 TYR A 429 TRP A 451 HOH A 503 HOH A 626 SITE 3 AC1 9 HOH A 632 SITE 1 AC2 5 ALA A 211 LYS A 215 GLY A 350 TRP A 351 SITE 2 AC2 5 SER A 353 SITE 1 AC3 4 GLN A 129 GLU A 142 ASP A 144 HOH A 977 SITE 1 AC4 5 GLY A 354 ASN A 355 TYR A 359 HOH A 721 SITE 2 AC4 5 HOH A 885 SITE 1 AC5 6 ILE A 42 ASN A 45 ASN A 84 ASN A 87 SITE 2 AC5 6 TYR A 114 HOH A 752 SITE 1 AC6 6 SER A 78 GLY A 80 TYR A 81 ARG A 121 SITE 2 AC6 6 HOH A 632 HOH A 955 SITE 1 AC7 1 ASN A 87 SITE 1 AC8 6 HOH A 491 HOH A 492 HOH A 493 HOH A 494 SITE 2 AC8 6 HOH A 495 HOH A 496 CRYST1 166.990 166.990 48.940 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005988 0.003457 0.000000 0.00000 SCALE2 0.000000 0.006915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020433 0.00000