data_3EJV # _entry.id 3EJV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EJV pdb_00003ejv 10.2210/pdb3ejv/pdb RCSB RCSB049413 ? ? WWPDB D_1000049413 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391050 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3EJV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of protein of unknown function with a cystatin-like fold (YP_498036.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.40 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3EJV _cell.length_a 79.540 _cell.length_b 79.540 _cell.length_c 79.540 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EJV _symmetry.Int_Tables_number 198 _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein with cystatin-like fold' 20167.564 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 4 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 5 water nat water 18.015 174 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)T(MSE)ADETIILNVLGQYTRAHDRRDPDA(MSE)AALFAPEATIEIVDAVG GASRSISRLEGRDAIRVAVRQ(MSE)(MSE)APHGYRAWSQNVVNAPIIVIEGDHAVLDAQF(MSE)VFSILAAEVPDGG WPTGTFGAQGRIVPIEAGQYRLTLRTVADGWVISA(MSE)RIEHRLP(MSE)AFG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMTMADETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIR VAVRQMMAPHGYRAWSQNVVNAPIIVIEGDHAVLDAQFMVFSILAAEVPDGGWPTGTFGAQGRIVPIEAGQYRLTLRTVA DGWVISAMRIEHRLPMAFG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 391050 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 THR n 1 22 MSE n 1 23 ALA n 1 24 ASP n 1 25 GLU n 1 26 THR n 1 27 ILE n 1 28 ILE n 1 29 LEU n 1 30 ASN n 1 31 VAL n 1 32 LEU n 1 33 GLY n 1 34 GLN n 1 35 TYR n 1 36 THR n 1 37 ARG n 1 38 ALA n 1 39 HIS n 1 40 ASP n 1 41 ARG n 1 42 ARG n 1 43 ASP n 1 44 PRO n 1 45 ASP n 1 46 ALA n 1 47 MSE n 1 48 ALA n 1 49 ALA n 1 50 LEU n 1 51 PHE n 1 52 ALA n 1 53 PRO n 1 54 GLU n 1 55 ALA n 1 56 THR n 1 57 ILE n 1 58 GLU n 1 59 ILE n 1 60 VAL n 1 61 ASP n 1 62 ALA n 1 63 VAL n 1 64 GLY n 1 65 GLY n 1 66 ALA n 1 67 SER n 1 68 ARG n 1 69 SER n 1 70 ILE n 1 71 SER n 1 72 ARG n 1 73 LEU n 1 74 GLU n 1 75 GLY n 1 76 ARG n 1 77 ASP n 1 78 ALA n 1 79 ILE n 1 80 ARG n 1 81 VAL n 1 82 ALA n 1 83 VAL n 1 84 ARG n 1 85 GLN n 1 86 MSE n 1 87 MSE n 1 88 ALA n 1 89 PRO n 1 90 HIS n 1 91 GLY n 1 92 TYR n 1 93 ARG n 1 94 ALA n 1 95 TRP n 1 96 SER n 1 97 GLN n 1 98 ASN n 1 99 VAL n 1 100 VAL n 1 101 ASN n 1 102 ALA n 1 103 PRO n 1 104 ILE n 1 105 ILE n 1 106 VAL n 1 107 ILE n 1 108 GLU n 1 109 GLY n 1 110 ASP n 1 111 HIS n 1 112 ALA n 1 113 VAL n 1 114 LEU n 1 115 ASP n 1 116 ALA n 1 117 GLN n 1 118 PHE n 1 119 MSE n 1 120 VAL n 1 121 PHE n 1 122 SER n 1 123 ILE n 1 124 LEU n 1 125 ALA n 1 126 ALA n 1 127 GLU n 1 128 VAL n 1 129 PRO n 1 130 ASP n 1 131 GLY n 1 132 GLY n 1 133 TRP n 1 134 PRO n 1 135 THR n 1 136 GLY n 1 137 THR n 1 138 PHE n 1 139 GLY n 1 140 ALA n 1 141 GLN n 1 142 GLY n 1 143 ARG n 1 144 ILE n 1 145 VAL n 1 146 PRO n 1 147 ILE n 1 148 GLU n 1 149 ALA n 1 150 GLY n 1 151 GLN n 1 152 TYR n 1 153 ARG n 1 154 LEU n 1 155 THR n 1 156 LEU n 1 157 ARG n 1 158 THR n 1 159 VAL n 1 160 ALA n 1 161 ASP n 1 162 GLY n 1 163 TRP n 1 164 VAL n 1 165 ILE n 1 166 SER n 1 167 ALA n 1 168 MSE n 1 169 ARG n 1 170 ILE n 1 171 GLU n 1 172 HIS n 1 173 ARG n 1 174 LEU n 1 175 PRO n 1 176 MSE n 1 177 ALA n 1 178 PHE n 1 179 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_498036.1, Saro_2766' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Novosphingobium aromaticivorans DSM 12444' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 279238 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2G4M1_NOVAD _struct_ref.pdbx_db_accession Q2G4M1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTMADETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNV VNAPIIVIEGDHAVLDAQFMVFSILAAEVPDGGWPTGTFGAQGRIVPIEAGQYRLTLRTVADGWVISAMRIEHRLPMAFG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EJV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2G4M1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 160 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 160 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EJV MSE A 1 ? UNP Q2G4M1 ? ? 'expression tag' -18 1 1 3EJV GLY A 2 ? UNP Q2G4M1 ? ? 'expression tag' -17 2 1 3EJV SER A 3 ? UNP Q2G4M1 ? ? 'expression tag' -16 3 1 3EJV ASP A 4 ? UNP Q2G4M1 ? ? 'expression tag' -15 4 1 3EJV LYS A 5 ? UNP Q2G4M1 ? ? 'expression tag' -14 5 1 3EJV ILE A 6 ? UNP Q2G4M1 ? ? 'expression tag' -13 6 1 3EJV HIS A 7 ? UNP Q2G4M1 ? ? 'expression tag' -12 7 1 3EJV HIS A 8 ? UNP Q2G4M1 ? ? 'expression tag' -11 8 1 3EJV HIS A 9 ? UNP Q2G4M1 ? ? 'expression tag' -10 9 1 3EJV HIS A 10 ? UNP Q2G4M1 ? ? 'expression tag' -9 10 1 3EJV HIS A 11 ? UNP Q2G4M1 ? ? 'expression tag' -8 11 1 3EJV HIS A 12 ? UNP Q2G4M1 ? ? 'expression tag' -7 12 1 3EJV GLU A 13 ? UNP Q2G4M1 ? ? 'expression tag' -6 13 1 3EJV ASN A 14 ? UNP Q2G4M1 ? ? 'expression tag' -5 14 1 3EJV LEU A 15 ? UNP Q2G4M1 ? ? 'expression tag' -4 15 1 3EJV TYR A 16 ? UNP Q2G4M1 ? ? 'expression tag' -3 16 1 3EJV PHE A 17 ? UNP Q2G4M1 ? ? 'expression tag' -2 17 1 3EJV GLN A 18 ? UNP Q2G4M1 ? ? 'expression tag' -1 18 1 3EJV GLY A 19 ? UNP Q2G4M1 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3EJV # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.0000M (NH4)2SO4, 2.0000% PEG-400, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-08-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97929 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97929 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3EJV _reflns.d_resolution_high 1.40 _reflns.d_resolution_low 28.127 _reflns.number_obs 33205 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.percent_possible_obs 99.300 _reflns.B_iso_Wilson_estimate 13.350 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.990 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.40 1.45 17275 ? 6198 0.550 2.0 ? ? ? ? ? 97.00 ? 1 1.45 1.51 18394 ? 6558 0.392 2.8 ? ? ? ? ? 99.50 ? 2 1.51 1.58 18154 ? 6457 0.282 3.8 ? ? ? ? ? 99.60 ? 3 1.58 1.66 17415 ? 6161 0.204 5.3 ? ? ? ? ? 99.60 ? 4 1.66 1.76 17474 ? 6150 0.140 7.4 ? ? ? ? ? 99.60 ? 5 1.76 1.90 18779 ? 6587 0.096 10.6 ? ? ? ? ? 99.60 ? 6 1.90 2.09 18230 ? 6377 0.058 16.3 ? ? ? ? ? 99.70 ? 7 2.09 2.39 18160 ? 6316 0.042 22.1 ? ? ? ? ? 99.50 ? 8 2.39 3.01 18588 ? 6418 0.030 28.7 ? ? ? ? ? 99.80 ? 9 3.01 28.127 18692 ? 6443 0.022 40.3 ? ? ? ? ? 99.40 ? 10 # _refine.entry_id 3EJV _refine.ls_d_res_high 1.400 _refine.ls_d_res_low 28.127 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.870 _refine.ls_number_reflns_obs 33165 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.PGE (PEG 400 FRAGMENT) AND 1,2-ETHANEDIOL (EDO) FROM THE CRYSTALLIZATION AND CRYOPROTECTANT RESPECTIVELY HAVE BEEN MODELED. 4.AN UNKNOWN LIGAND (UNL) RESEMBLING BENZOIC ACID (BEZ) HAS BEEN MODELED NEAR RESIDUE TYR16 BASED ON ELECTRON DENSITY. 5.THE ELECTRON DENSITY BETWEEN RESIDUES 72-75 IS POOR. ; _refine.ls_R_factor_obs 0.143 _refine.ls_R_factor_R_work 0.142 _refine.ls_R_factor_R_free 0.161 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1672 _refine.B_iso_mean 16.110 _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.968 _refine.pdbx_overall_ESU_R 0.060 _refine.pdbx_overall_ESU_R_Free 0.051 _refine.overall_SU_ML 0.029 _refine.overall_SU_B 1.605 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.B_iso_max 61.96 _refine.B_iso_min 5.38 _refine.occupancy_max 1.00 _refine.occupancy_min 0.15 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1203 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 1412 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 28.127 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1387 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 952 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1900 1.545 1.960 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2325 0.971 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 194 6.624 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 60 33.973 23.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 228 11.860 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 17.200 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 216 0.112 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1582 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 288 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 208 0.223 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 957 0.214 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 646 0.172 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 761 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 78 0.136 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 17 0.186 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 67 0.295 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 26 0.169 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 934 1.990 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 348 0.859 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1403 2.606 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 569 2.131 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 481 2.888 3.000 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2641 1.363 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 187 6.287 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2301 3.057 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.401 _refine_ls_shell.d_res_low 1.438 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.430 _refine_ls_shell.number_reflns_R_work 2317 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.202 _refine_ls_shell.R_factor_R_free 0.239 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 118 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2435 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EJV _struct.title 'Crystal structure of a cystatin-like protein (saro_2766) from novosphingobium aromaticivorans dsm at 1.40 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Cystatin-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3EJV # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS A TRIMER AS THE OLIGOMERIC FORM IN SOLUTION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 23 ? ARG A 42 ? ALA A 4 ARG A 23 1 ? 20 HELX_P HELX_P2 2 ASP A 43 ? ALA A 49 ? ASP A 24 ALA A 30 1 ? 7 HELX_P HELX_P3 3 VAL A 63 ? ALA A 66 ? VAL A 44 ALA A 47 5 ? 4 HELX_P HELX_P4 4 GLY A 75 ? MSE A 86 ? GLY A 56 MSE A 67 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 21 C ? ? ? 1_555 A MSE 22 N ? ? A THR 2 A MSE 3 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A MSE 22 C ? ? ? 1_555 A ALA 23 N ? ? A MSE 3 A ALA 4 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale3 covale both ? A ALA 46 C ? ? ? 1_555 A MSE 47 N ? ? A ALA 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A MSE 47 C ? ? ? 1_555 A ALA 48 N ? ? A MSE 28 A ALA 29 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? A GLN 85 C ? ? ? 1_555 A MSE 86 N ? ? A GLN 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale6 covale both ? A MSE 86 C ? ? ? 1_555 A MSE 87 N ? ? A MSE 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A MSE 87 C ? ? ? 1_555 A ALA 88 N ? ? A MSE 68 A ALA 69 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? A PHE 118 C ? ? ? 1_555 A MSE 119 N ? ? A PHE 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A MSE 119 C ? ? ? 1_555 A VAL 120 N ? ? A MSE 100 A VAL 101 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale10 covale both ? A ALA 167 C ? ? ? 1_555 A MSE 168 N ? ? A ALA 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? A MSE 168 C ? ? ? 1_555 A ARG 169 N ? ? A MSE 149 A ARG 150 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale12 covale both ? A PRO 175 C ? ? ? 1_555 A MSE 176 N ? ? A PRO 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale13 covale both ? A MSE 176 C ? ? ? 1_555 A ALA 177 N ? ? A MSE 157 A ALA 158 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 68 ? GLU A 74 ? ARG A 49 GLU A 55 A 2 PHE A 51 ? ASP A 61 ? PHE A 32 ASP A 42 A 3 GLY A 162 ? HIS A 172 ? GLY A 143 HIS A 153 A 4 GLY A 142 ? VAL A 159 ? GLY A 123 VAL A 140 A 5 HIS A 111 ? ALA A 125 ? HIS A 92 ALA A 106 A 6 ALA A 94 ? GLU A 108 ? ALA A 75 GLU A 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 68 ? O ARG A 49 N ASP A 61 ? N ASP A 42 A 2 3 N VAL A 60 ? N VAL A 41 O ILE A 170 ? O ILE A 151 A 3 4 O ALA A 167 ? O ALA A 148 N THR A 155 ? N THR A 136 A 4 5 O ILE A 147 ? O ILE A 128 N VAL A 120 ? N VAL A 101 A 5 6 O MSE A 119 ? O MSE A 100 N VAL A 99 ? N VAL A 80 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A UNL 200 ? 8 'BINDING SITE FOR RESIDUE UNL A 200' AC2 Software A EDO 201 ? 5 'BINDING SITE FOR RESIDUE EDO A 201' AC3 Software A EDO 202 ? 4 'BINDING SITE FOR RESIDUE EDO A 202' AC4 Software A EDO 203 ? 7 'BINDING SITE FOR RESIDUE EDO A 203' AC5 Software A EDO 204 ? 6 'BINDING SITE FOR RESIDUE EDO A 204' AC6 Software A PGE 205 ? 6 'BINDING SITE FOR RESIDUE PGE A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TYR A 35 ? TYR A 16 . ? 1_555 ? 2 AC1 8 HIS A 39 ? HIS A 20 . ? 1_555 ? 3 AC1 8 MSE A 47 ? MSE A 28 . ? 1_555 ? 4 AC1 8 MSE A 87 ? MSE A 68 . ? 1_555 ? 5 AC1 8 TYR A 152 ? TYR A 133 . ? 1_555 ? 6 AC1 8 ILE A 170 ? ILE A 151 . ? 1_555 ? 7 AC1 8 EDO D . ? EDO A 202 . ? 1_555 ? 8 AC1 8 HOH H . ? HOH A 290 . ? 1_555 ? 9 AC2 5 ALA A 140 ? ALA A 121 . ? 6_456 ? 10 AC2 5 GLY A 142 ? GLY A 123 . ? 6_456 ? 11 AC2 5 PRO A 146 ? PRO A 127 . ? 1_555 ? 12 AC2 5 ILE A 147 ? ILE A 128 . ? 1_555 ? 13 AC2 5 LEU A 174 ? LEU A 155 . ? 1_555 ? 14 AC3 4 MSE A 86 ? MSE A 67 . ? 1_555 ? 15 AC3 4 GLU A 148 ? GLU A 129 . ? 1_555 ? 16 AC3 4 HIS A 172 ? HIS A 153 . ? 1_555 ? 17 AC3 4 UNL B . ? UNL A 200 . ? 1_555 ? 18 AC4 7 ARG A 153 ? ARG A 134 . ? 1_555 ? 19 AC4 7 LEU A 154 ? LEU A 135 . ? 1_555 ? 20 AC4 7 THR A 155 ? THR A 136 . ? 1_555 ? 21 AC4 7 ALA A 167 ? ALA A 148 . ? 1_555 ? 22 AC4 7 MSE A 168 ? MSE A 149 . ? 1_555 ? 23 AC4 7 ARG A 169 ? ARG A 150 . ? 1_555 ? 24 AC4 7 HOH H . ? HOH A 265 . ? 1_555 ? 25 AC5 6 ARG A 84 ? ARG A 65 . ? 5_555 ? 26 AC5 6 HIS A 111 ? HIS A 92 . ? 1_555 ? 27 AC5 6 ARG A 157 ? ARG A 138 . ? 1_555 ? 28 AC5 6 SER A 166 ? SER A 147 . ? 1_555 ? 29 AC5 6 HOH H . ? HOH A 340 . ? 5_555 ? 30 AC5 6 HOH H . ? HOH A 360 . ? 1_555 ? 31 AC6 6 SER A 71 ? SER A 52 . ? 3_555 ? 32 AC6 6 THR A 135 ? THR A 116 . ? 1_555 ? 33 AC6 6 PHE A 178 ? PHE A 159 . ? 3_555 ? 34 AC6 6 HOH H . ? HOH A 325 . ? 3_555 ? 35 AC6 6 HOH H . ? HOH A 335 . ? 1_555 ? 36 AC6 6 HOH H . ? HOH A 339 . ? 3_555 ? # _atom_sites.entry_id 3EJV _atom_sites.fract_transf_matrix[1][1] 0.012572 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012572 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012572 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 ? ? ? A . n A 1 15 LEU 15 -4 ? ? ? A . n A 1 16 TYR 16 -3 ? ? ? A . n A 1 17 PHE 17 -2 ? ? ? A . n A 1 18 GLN 18 -1 ? ? ? A . n A 1 19 GLY 19 0 ? ? ? A . n A 1 20 MSE 20 1 ? ? ? A . n A 1 21 THR 21 2 2 THR THR A . n A 1 22 MSE 22 3 3 MSE MSE A . n A 1 23 ALA 23 4 4 ALA ALA A . n A 1 24 ASP 24 5 5 ASP ASP A . n A 1 25 GLU 25 6 6 GLU GLU A . n A 1 26 THR 26 7 7 THR THR A . n A 1 27 ILE 27 8 8 ILE ILE A . n A 1 28 ILE 28 9 9 ILE ILE A . n A 1 29 LEU 29 10 10 LEU LEU A . n A 1 30 ASN 30 11 11 ASN ASN A . n A 1 31 VAL 31 12 12 VAL VAL A . n A 1 32 LEU 32 13 13 LEU LEU A . n A 1 33 GLY 33 14 14 GLY GLY A . n A 1 34 GLN 34 15 15 GLN GLN A . n A 1 35 TYR 35 16 16 TYR TYR A . n A 1 36 THR 36 17 17 THR THR A . n A 1 37 ARG 37 18 18 ARG ARG A . n A 1 38 ALA 38 19 19 ALA ALA A . n A 1 39 HIS 39 20 20 HIS HIS A . n A 1 40 ASP 40 21 21 ASP ASP A . n A 1 41 ARG 41 22 22 ARG ARG A . n A 1 42 ARG 42 23 23 ARG ARG A . n A 1 43 ASP 43 24 24 ASP ASP A . n A 1 44 PRO 44 25 25 PRO PRO A . n A 1 45 ASP 45 26 26 ASP ASP A . n A 1 46 ALA 46 27 27 ALA ALA A . n A 1 47 MSE 47 28 28 MSE MSE A . n A 1 48 ALA 48 29 29 ALA ALA A . n A 1 49 ALA 49 30 30 ALA ALA A . n A 1 50 LEU 50 31 31 LEU LEU A . n A 1 51 PHE 51 32 32 PHE PHE A . n A 1 52 ALA 52 33 33 ALA ALA A . n A 1 53 PRO 53 34 34 PRO PRO A . n A 1 54 GLU 54 35 35 GLU GLU A . n A 1 55 ALA 55 36 36 ALA ALA A . n A 1 56 THR 56 37 37 THR THR A . n A 1 57 ILE 57 38 38 ILE ILE A . n A 1 58 GLU 58 39 39 GLU GLU A . n A 1 59 ILE 59 40 40 ILE ILE A . n A 1 60 VAL 60 41 41 VAL VAL A . n A 1 61 ASP 61 42 42 ASP ASP A . n A 1 62 ALA 62 43 43 ALA ALA A . n A 1 63 VAL 63 44 44 VAL VAL A . n A 1 64 GLY 64 45 45 GLY GLY A . n A 1 65 GLY 65 46 46 GLY GLY A . n A 1 66 ALA 66 47 47 ALA ALA A . n A 1 67 SER 67 48 48 SER SER A . n A 1 68 ARG 68 49 49 ARG ARG A . n A 1 69 SER 69 50 50 SER SER A . n A 1 70 ILE 70 51 51 ILE ILE A . n A 1 71 SER 71 52 52 SER SER A . n A 1 72 ARG 72 53 53 ARG ARG A . n A 1 73 LEU 73 54 54 LEU LEU A . n A 1 74 GLU 74 55 55 GLU GLU A . n A 1 75 GLY 75 56 56 GLY GLY A . n A 1 76 ARG 76 57 57 ARG ARG A . n A 1 77 ASP 77 58 58 ASP ASP A . n A 1 78 ALA 78 59 59 ALA ALA A . n A 1 79 ILE 79 60 60 ILE ILE A . n A 1 80 ARG 80 61 61 ARG ARG A . n A 1 81 VAL 81 62 62 VAL VAL A . n A 1 82 ALA 82 63 63 ALA ALA A . n A 1 83 VAL 83 64 64 VAL VAL A . n A 1 84 ARG 84 65 65 ARG ARG A . n A 1 85 GLN 85 66 66 GLN GLN A . n A 1 86 MSE 86 67 67 MSE MSE A . n A 1 87 MSE 87 68 68 MSE MSE A . n A 1 88 ALA 88 69 69 ALA ALA A . n A 1 89 PRO 89 70 70 PRO PRO A . n A 1 90 HIS 90 71 71 HIS HIS A . n A 1 91 GLY 91 72 72 GLY GLY A . n A 1 92 TYR 92 73 73 TYR TYR A . n A 1 93 ARG 93 74 74 ARG ARG A . n A 1 94 ALA 94 75 75 ALA ALA A . n A 1 95 TRP 95 76 76 TRP TRP A . n A 1 96 SER 96 77 77 SER SER A . n A 1 97 GLN 97 78 78 GLN GLN A . n A 1 98 ASN 98 79 79 ASN ASN A . n A 1 99 VAL 99 80 80 VAL VAL A . n A 1 100 VAL 100 81 81 VAL VAL A . n A 1 101 ASN 101 82 82 ASN ASN A . n A 1 102 ALA 102 83 83 ALA ALA A . n A 1 103 PRO 103 84 84 PRO PRO A . n A 1 104 ILE 104 85 85 ILE ILE A . n A 1 105 ILE 105 86 86 ILE ILE A . n A 1 106 VAL 106 87 87 VAL VAL A . n A 1 107 ILE 107 88 88 ILE ILE A . n A 1 108 GLU 108 89 89 GLU GLU A . n A 1 109 GLY 109 90 90 GLY GLY A . n A 1 110 ASP 110 91 91 ASP ASP A . n A 1 111 HIS 111 92 92 HIS HIS A . n A 1 112 ALA 112 93 93 ALA ALA A . n A 1 113 VAL 113 94 94 VAL VAL A . n A 1 114 LEU 114 95 95 LEU LEU A . n A 1 115 ASP 115 96 96 ASP ASP A . n A 1 116 ALA 116 97 97 ALA ALA A . n A 1 117 GLN 117 98 98 GLN GLN A . n A 1 118 PHE 118 99 99 PHE PHE A . n A 1 119 MSE 119 100 100 MSE MSE A . n A 1 120 VAL 120 101 101 VAL VAL A . n A 1 121 PHE 121 102 102 PHE PHE A . n A 1 122 SER 122 103 103 SER SER A . n A 1 123 ILE 123 104 104 ILE ILE A . n A 1 124 LEU 124 105 105 LEU LEU A . n A 1 125 ALA 125 106 106 ALA ALA A . n A 1 126 ALA 126 107 107 ALA ALA A . n A 1 127 GLU 127 108 108 GLU GLU A . n A 1 128 VAL 128 109 109 VAL VAL A . n A 1 129 PRO 129 110 110 PRO PRO A . n A 1 130 ASP 130 111 111 ASP ASP A . n A 1 131 GLY 131 112 112 GLY GLY A . n A 1 132 GLY 132 113 113 GLY GLY A . n A 1 133 TRP 133 114 114 TRP TRP A . n A 1 134 PRO 134 115 115 PRO PRO A . n A 1 135 THR 135 116 116 THR THR A . n A 1 136 GLY 136 117 117 GLY GLY A . n A 1 137 THR 137 118 118 THR THR A . n A 1 138 PHE 138 119 119 PHE PHE A . n A 1 139 GLY 139 120 120 GLY GLY A . n A 1 140 ALA 140 121 121 ALA ALA A . n A 1 141 GLN 141 122 122 GLN GLN A . n A 1 142 GLY 142 123 123 GLY GLY A . n A 1 143 ARG 143 124 124 ARG ARG A . n A 1 144 ILE 144 125 125 ILE ILE A . n A 1 145 VAL 145 126 126 VAL VAL A . n A 1 146 PRO 146 127 127 PRO PRO A . n A 1 147 ILE 147 128 128 ILE ILE A . n A 1 148 GLU 148 129 129 GLU GLU A . n A 1 149 ALA 149 130 130 ALA ALA A . n A 1 150 GLY 150 131 131 GLY GLY A . n A 1 151 GLN 151 132 132 GLN GLN A . n A 1 152 TYR 152 133 133 TYR TYR A . n A 1 153 ARG 153 134 134 ARG ARG A . n A 1 154 LEU 154 135 135 LEU LEU A . n A 1 155 THR 155 136 136 THR THR A . n A 1 156 LEU 156 137 137 LEU LEU A . n A 1 157 ARG 157 138 138 ARG ARG A . n A 1 158 THR 158 139 139 THR THR A . n A 1 159 VAL 159 140 140 VAL VAL A . n A 1 160 ALA 160 141 141 ALA ALA A . n A 1 161 ASP 161 142 142 ASP ASP A . n A 1 162 GLY 162 143 143 GLY GLY A . n A 1 163 TRP 163 144 144 TRP TRP A . n A 1 164 VAL 164 145 145 VAL VAL A . n A 1 165 ILE 165 146 146 ILE ILE A . n A 1 166 SER 166 147 147 SER SER A . n A 1 167 ALA 167 148 148 ALA ALA A . n A 1 168 MSE 168 149 149 MSE MSE A . n A 1 169 ARG 169 150 150 ARG ARG A . n A 1 170 ILE 170 151 151 ILE ILE A . n A 1 171 GLU 171 152 152 GLU GLU A . n A 1 172 HIS 172 153 153 HIS HIS A . n A 1 173 ARG 173 154 154 ARG ARG A . n A 1 174 LEU 174 155 155 LEU LEU A . n A 1 175 PRO 175 156 156 PRO PRO A . n A 1 176 MSE 176 157 157 MSE MSE A . n A 1 177 ALA 177 158 158 ALA ALA A . n A 1 178 PHE 178 159 159 PHE PHE A . n A 1 179 GLY 179 160 160 GLY GLY A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL 1 200 200 UNL UNL A . C 3 EDO 1 201 1 EDO EDO A . D 3 EDO 1 202 2 EDO EDO A . E 3 EDO 1 203 3 EDO EDO A . F 3 EDO 1 204 4 EDO EDO A . G 4 PGE 1 205 5 PGE PGE A . H 5 HOH 1 206 6 HOH HOH A . H 5 HOH 2 207 7 HOH HOH A . H 5 HOH 3 208 8 HOH HOH A . H 5 HOH 4 209 9 HOH HOH A . H 5 HOH 5 210 10 HOH HOH A . H 5 HOH 6 211 11 HOH HOH A . H 5 HOH 7 212 12 HOH HOH A . H 5 HOH 8 213 13 HOH HOH A . H 5 HOH 9 214 14 HOH HOH A . H 5 HOH 10 215 15 HOH HOH A . H 5 HOH 11 216 16 HOH HOH A . H 5 HOH 12 217 17 HOH HOH A . H 5 HOH 13 218 18 HOH HOH A . H 5 HOH 14 219 19 HOH HOH A . H 5 HOH 15 220 20 HOH HOH A . H 5 HOH 16 221 21 HOH HOH A . H 5 HOH 17 222 22 HOH HOH A . H 5 HOH 18 223 23 HOH HOH A . H 5 HOH 19 224 24 HOH HOH A . H 5 HOH 20 225 25 HOH HOH A . H 5 HOH 21 226 26 HOH HOH A . H 5 HOH 22 227 27 HOH HOH A . H 5 HOH 23 228 28 HOH HOH A . H 5 HOH 24 229 29 HOH HOH A . H 5 HOH 25 230 30 HOH HOH A . H 5 HOH 26 231 31 HOH HOH A . H 5 HOH 27 232 32 HOH HOH A . H 5 HOH 28 233 33 HOH HOH A . H 5 HOH 29 234 34 HOH HOH A . H 5 HOH 30 235 35 HOH HOH A . H 5 HOH 31 236 36 HOH HOH A . H 5 HOH 32 237 37 HOH HOH A . H 5 HOH 33 238 38 HOH HOH A . H 5 HOH 34 239 39 HOH HOH A . H 5 HOH 35 240 40 HOH HOH A . H 5 HOH 36 241 41 HOH HOH A . H 5 HOH 37 242 42 HOH HOH A . H 5 HOH 38 243 43 HOH HOH A . H 5 HOH 39 244 44 HOH HOH A . H 5 HOH 40 245 45 HOH HOH A . H 5 HOH 41 246 46 HOH HOH A . H 5 HOH 42 247 47 HOH HOH A . H 5 HOH 43 248 48 HOH HOH A . H 5 HOH 44 249 49 HOH HOH A . H 5 HOH 45 250 50 HOH HOH A . H 5 HOH 46 251 51 HOH HOH A . H 5 HOH 47 252 52 HOH HOH A . H 5 HOH 48 253 53 HOH HOH A . H 5 HOH 49 254 54 HOH HOH A . H 5 HOH 50 255 55 HOH HOH A . H 5 HOH 51 256 56 HOH HOH A . H 5 HOH 52 257 57 HOH HOH A . H 5 HOH 53 258 58 HOH HOH A . H 5 HOH 54 259 59 HOH HOH A . H 5 HOH 55 260 60 HOH HOH A . H 5 HOH 56 261 61 HOH HOH A . H 5 HOH 57 262 62 HOH HOH A . H 5 HOH 58 263 63 HOH HOH A . H 5 HOH 59 264 64 HOH HOH A . H 5 HOH 60 265 65 HOH HOH A . H 5 HOH 61 266 66 HOH HOH A . H 5 HOH 62 267 67 HOH HOH A . H 5 HOH 63 268 68 HOH HOH A . H 5 HOH 64 269 69 HOH HOH A . H 5 HOH 65 270 70 HOH HOH A . H 5 HOH 66 271 71 HOH HOH A . H 5 HOH 67 272 72 HOH HOH A . H 5 HOH 68 273 73 HOH HOH A . H 5 HOH 69 274 74 HOH HOH A . H 5 HOH 70 275 75 HOH HOH A . H 5 HOH 71 276 76 HOH HOH A . H 5 HOH 72 277 77 HOH HOH A . H 5 HOH 73 278 78 HOH HOH A . H 5 HOH 74 279 79 HOH HOH A . H 5 HOH 75 280 80 HOH HOH A . H 5 HOH 76 281 81 HOH HOH A . H 5 HOH 77 282 82 HOH HOH A . H 5 HOH 78 283 83 HOH HOH A . H 5 HOH 79 284 84 HOH HOH A . H 5 HOH 80 285 85 HOH HOH A . H 5 HOH 81 286 86 HOH HOH A . H 5 HOH 82 287 87 HOH HOH A . H 5 HOH 83 288 88 HOH HOH A . H 5 HOH 84 289 89 HOH HOH A . H 5 HOH 85 290 90 HOH HOH A . H 5 HOH 86 291 91 HOH HOH A . H 5 HOH 87 292 92 HOH HOH A . H 5 HOH 88 293 93 HOH HOH A . H 5 HOH 89 294 94 HOH HOH A . H 5 HOH 90 295 95 HOH HOH A . H 5 HOH 91 296 96 HOH HOH A . H 5 HOH 92 297 97 HOH HOH A . H 5 HOH 93 298 98 HOH HOH A . H 5 HOH 94 299 99 HOH HOH A . H 5 HOH 95 300 100 HOH HOH A . H 5 HOH 96 301 101 HOH HOH A . H 5 HOH 97 302 102 HOH HOH A . H 5 HOH 98 303 103 HOH HOH A . H 5 HOH 99 304 104 HOH HOH A . H 5 HOH 100 305 105 HOH HOH A . H 5 HOH 101 306 106 HOH HOH A . H 5 HOH 102 307 107 HOH HOH A . H 5 HOH 103 308 108 HOH HOH A . H 5 HOH 104 309 109 HOH HOH A . H 5 HOH 105 310 110 HOH HOH A . H 5 HOH 106 311 111 HOH HOH A . H 5 HOH 107 312 112 HOH HOH A . H 5 HOH 108 313 113 HOH HOH A . H 5 HOH 109 314 114 HOH HOH A . H 5 HOH 110 315 115 HOH HOH A . H 5 HOH 111 316 116 HOH HOH A . H 5 HOH 112 317 117 HOH HOH A . H 5 HOH 113 318 118 HOH HOH A . H 5 HOH 114 319 119 HOH HOH A . H 5 HOH 115 320 120 HOH HOH A . H 5 HOH 116 321 121 HOH HOH A . H 5 HOH 117 322 122 HOH HOH A . H 5 HOH 118 323 123 HOH HOH A . H 5 HOH 119 324 124 HOH HOH A . H 5 HOH 120 325 125 HOH HOH A . H 5 HOH 121 326 126 HOH HOH A . H 5 HOH 122 327 127 HOH HOH A . H 5 HOH 123 328 128 HOH HOH A . H 5 HOH 124 329 129 HOH HOH A . H 5 HOH 125 330 130 HOH HOH A . H 5 HOH 126 331 131 HOH HOH A . H 5 HOH 127 332 132 HOH HOH A . H 5 HOH 128 333 133 HOH HOH A . H 5 HOH 129 334 134 HOH HOH A . H 5 HOH 130 335 135 HOH HOH A . H 5 HOH 131 336 136 HOH HOH A . H 5 HOH 132 337 137 HOH HOH A . H 5 HOH 133 338 138 HOH HOH A . H 5 HOH 134 339 139 HOH HOH A . H 5 HOH 135 340 140 HOH HOH A . H 5 HOH 136 341 141 HOH HOH A . H 5 HOH 137 342 142 HOH HOH A . H 5 HOH 138 343 143 HOH HOH A . H 5 HOH 139 344 144 HOH HOH A . H 5 HOH 140 345 145 HOH HOH A . H 5 HOH 141 346 146 HOH HOH A . H 5 HOH 142 347 147 HOH HOH A . H 5 HOH 143 348 148 HOH HOH A . H 5 HOH 144 349 149 HOH HOH A . H 5 HOH 145 350 150 HOH HOH A . H 5 HOH 146 351 151 HOH HOH A . H 5 HOH 147 352 152 HOH HOH A . H 5 HOH 148 353 153 HOH HOH A . H 5 HOH 149 354 154 HOH HOH A . H 5 HOH 150 355 155 HOH HOH A . H 5 HOH 151 356 156 HOH HOH A . H 5 HOH 152 357 157 HOH HOH A . H 5 HOH 153 358 158 HOH HOH A . H 5 HOH 154 359 159 HOH HOH A . H 5 HOH 155 360 160 HOH HOH A . H 5 HOH 156 361 161 HOH HOH A . H 5 HOH 157 362 162 HOH HOH A . H 5 HOH 158 363 163 HOH HOH A . H 5 HOH 159 364 164 HOH HOH A . H 5 HOH 160 365 165 HOH HOH A . H 5 HOH 161 366 166 HOH HOH A . H 5 HOH 162 367 167 HOH HOH A . H 5 HOH 163 368 168 HOH HOH A . H 5 HOH 164 369 169 HOH HOH A . H 5 HOH 165 370 170 HOH HOH A . H 5 HOH 166 371 171 HOH HOH A . H 5 HOH 167 372 172 HOH HOH A . H 5 HOH 168 373 173 HOH HOH A . H 5 HOH 169 374 174 HOH HOH A . H 5 HOH 170 375 175 HOH HOH A . H 5 HOH 171 376 176 HOH HOH A . H 5 HOH 172 377 177 HOH HOH A . H 5 HOH 173 378 178 HOH HOH A . H 5 HOH 174 379 179 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 22 A MSE 3 ? MET SELENOMETHIONINE 2 A MSE 47 A MSE 28 ? MET SELENOMETHIONINE 3 A MSE 86 A MSE 67 ? MET SELENOMETHIONINE 4 A MSE 87 A MSE 68 ? MET SELENOMETHIONINE 5 A MSE 119 A MSE 100 ? MET SELENOMETHIONINE 6 A MSE 168 A MSE 149 ? MET SELENOMETHIONINE 7 A MSE 176 A MSE 157 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11530 ? 1 MORE -5 ? 1 'SSA (A^2)' 20500 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0.0000000000 0.0000000000 1.0000000000 -39.7700000000 -1.0000000000 0.0000000000 0.0000000000 39.7700000000 0.0000000000 -1.0000000000 0.0000000000 79.5400000000 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0.0000000000 -1.0000000000 0.0000000000 39.7700000000 0.0000000000 0.0000000000 -1.0000000000 79.5400000000 1.0000000000 0.0000000000 0.0000000000 39.7700000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 206 ? H HOH . 2 1 A HOH 274 ? H HOH . 3 1 A HOH 275 ? H HOH . 4 1 A HOH 293 ? H HOH . 5 1 A HOH 321 ? H HOH . 6 1 A HOH 322 ? H HOH . 7 1 A HOH 330 ? H HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3EJV _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG.' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 48 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -142.70 _pdbx_validate_torsion.psi 56.78 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 49 ? NE ? A ARG 68 NE 2 1 Y 1 A ARG 49 ? CZ ? A ARG 68 CZ 3 1 Y 1 A ARG 49 ? NH1 ? A ARG 68 NH1 4 1 Y 1 A ARG 49 ? NH2 ? A ARG 68 NH2 5 1 Y 1 A ARG 53 ? CZ ? A ARG 72 CZ 6 1 Y 1 A ARG 53 ? NH1 ? A ARG 72 NH1 7 1 Y 1 A ARG 53 ? NH2 ? A ARG 72 NH2 8 1 Y 1 A ARG 124 ? CD ? A ARG 143 CD 9 1 Y 1 A ARG 124 ? NE ? A ARG 143 NE 10 1 Y 1 A ARG 124 ? CZ ? A ARG 143 CZ 11 1 Y 1 A ARG 124 ? NH1 ? A ARG 143 NH1 12 1 Y 1 A ARG 124 ? NH2 ? A ARG 143 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A ASN -5 ? A ASN 14 15 1 Y 1 A LEU -4 ? A LEU 15 16 1 Y 1 A TYR -3 ? A TYR 16 17 1 Y 1 A PHE -2 ? A PHE 17 18 1 Y 1 A GLN -1 ? A GLN 18 19 1 Y 1 A GLY 0 ? A GLY 19 20 1 Y 1 A MSE 1 ? A MSE 20 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 1,2-ETHANEDIOL EDO 4 'TRIETHYLENE GLYCOL' PGE 5 water HOH #