data_3EK3 # _entry.id 3EK3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EK3 pdb_00003ek3 10.2210/pdb3ek3/pdb RCSB RCSB049421 ? ? WWPDB D_1000049421 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391613 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3EK3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Nitroreductase with Bound FMN (YP_211706.1) from Bacteroides fragilis NCTC 9343 at 1.70 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3EK3 _cell.length_a 40.610 _cell.length_b 83.730 _cell.length_c 116.510 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EK3 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Nitroreductase 21278.631 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 3 ? ? ? ? 5 water nat water 18.015 205 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)KTNEVLETIKARRSVRAYDRKQIPADDLNAILEAGAYAPSG(MSE)HYETWHFTAVCNTVKLEELNERIKGAFA KSDDKHLRERGHSETYCCYYHAPTLVIVSNEPKQWWAG(MSE)DCACAIEN(MSE)FLAATSLGIASCWINQLGTTCDDP EVRAYLTSLGVPENHKVYGCVALGYKAEGALLKEKTVKAGTITIVE ; _entity_poly.pdbx_seq_one_letter_code_can ;GMKTNEVLETIKARRSVRAYDRKQIPADDLNAILEAGAYAPSGMHYETWHFTAVCNTVKLEELNERIKGAFAKSDDKHLR ERGHSETYCCYYHAPTLVIVSNEPKQWWAGMDCACAIENMFLAATSLGIASCWINQLGTTCDDPEVRAYLTSLGVPENHK VYGCVALGYKAEGALLKEKTVKAGTITIVE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 391613 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 LYS n 1 4 THR n 1 5 ASN n 1 6 GLU n 1 7 VAL n 1 8 LEU n 1 9 GLU n 1 10 THR n 1 11 ILE n 1 12 LYS n 1 13 ALA n 1 14 ARG n 1 15 ARG n 1 16 SER n 1 17 VAL n 1 18 ARG n 1 19 ALA n 1 20 TYR n 1 21 ASP n 1 22 ARG n 1 23 LYS n 1 24 GLN n 1 25 ILE n 1 26 PRO n 1 27 ALA n 1 28 ASP n 1 29 ASP n 1 30 LEU n 1 31 ASN n 1 32 ALA n 1 33 ILE n 1 34 LEU n 1 35 GLU n 1 36 ALA n 1 37 GLY n 1 38 ALA n 1 39 TYR n 1 40 ALA n 1 41 PRO n 1 42 SER n 1 43 GLY n 1 44 MSE n 1 45 HIS n 1 46 TYR n 1 47 GLU n 1 48 THR n 1 49 TRP n 1 50 HIS n 1 51 PHE n 1 52 THR n 1 53 ALA n 1 54 VAL n 1 55 CYS n 1 56 ASN n 1 57 THR n 1 58 VAL n 1 59 LYS n 1 60 LEU n 1 61 GLU n 1 62 GLU n 1 63 LEU n 1 64 ASN n 1 65 GLU n 1 66 ARG n 1 67 ILE n 1 68 LYS n 1 69 GLY n 1 70 ALA n 1 71 PHE n 1 72 ALA n 1 73 LYS n 1 74 SER n 1 75 ASP n 1 76 ASP n 1 77 LYS n 1 78 HIS n 1 79 LEU n 1 80 ARG n 1 81 GLU n 1 82 ARG n 1 83 GLY n 1 84 HIS n 1 85 SER n 1 86 GLU n 1 87 THR n 1 88 TYR n 1 89 CYS n 1 90 CYS n 1 91 TYR n 1 92 TYR n 1 93 HIS n 1 94 ALA n 1 95 PRO n 1 96 THR n 1 97 LEU n 1 98 VAL n 1 99 ILE n 1 100 VAL n 1 101 SER n 1 102 ASN n 1 103 GLU n 1 104 PRO n 1 105 LYS n 1 106 GLN n 1 107 TRP n 1 108 TRP n 1 109 ALA n 1 110 GLY n 1 111 MSE n 1 112 ASP n 1 113 CYS n 1 114 ALA n 1 115 CYS n 1 116 ALA n 1 117 ILE n 1 118 GLU n 1 119 ASN n 1 120 MSE n 1 121 PHE n 1 122 LEU n 1 123 ALA n 1 124 ALA n 1 125 THR n 1 126 SER n 1 127 LEU n 1 128 GLY n 1 129 ILE n 1 130 ALA n 1 131 SER n 1 132 CYS n 1 133 TRP n 1 134 ILE n 1 135 ASN n 1 136 GLN n 1 137 LEU n 1 138 GLY n 1 139 THR n 1 140 THR n 1 141 CYS n 1 142 ASP n 1 143 ASP n 1 144 PRO n 1 145 GLU n 1 146 VAL n 1 147 ARG n 1 148 ALA n 1 149 TYR n 1 150 LEU n 1 151 THR n 1 152 SER n 1 153 LEU n 1 154 GLY n 1 155 VAL n 1 156 PRO n 1 157 GLU n 1 158 ASN n 1 159 HIS n 1 160 LYS n 1 161 VAL n 1 162 TYR n 1 163 GLY n 1 164 CYS n 1 165 VAL n 1 166 ALA n 1 167 LEU n 1 168 GLY n 1 169 TYR n 1 170 LYS n 1 171 ALA n 1 172 GLU n 1 173 GLY n 1 174 ALA n 1 175 LEU n 1 176 LEU n 1 177 LYS n 1 178 GLU n 1 179 LYS n 1 180 THR n 1 181 VAL n 1 182 LYS n 1 183 ALA n 1 184 GLY n 1 185 THR n 1 186 ILE n 1 187 THR n 1 188 ILE n 1 189 VAL n 1 190 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_211706.1, BF2078' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis NCTC 9343' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LDN3_BACFN _struct_ref.pdbx_db_accession Q5LDN3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKTNEVLETIKARRSVRAYDRKQIPADDLNAILEAGAYAPSGMHYETWHFTAVCNTVKLEELNERIKGAFAKSDDKHLRE RGHSETYCCYYHAPTLVIVSNEPKQWWAGMDCACAIENMFLAATSLGIASCWINQLGTTCDDPEVRAYLTSLGVPENHKV YGCVALGYKAEGALLKEKTVKAGTITIVE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EK3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 190 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LDN3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 189 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 189 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3EK3 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5LDN3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3EK3 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '65.0000% MPD, 0.1M TRIS pH 8.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-08-04 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97932 1.0 3 0.97918 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97932,0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3EK3 _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 29.123 _reflns.pdbx_number_measured_all 80152 _reflns.number_obs 21975 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_netI_over_sigmaI 10.630 _reflns.percent_possible_obs 96.300 _reflns.pdbx_Rrim_I_all 0.080 _reflns.B_iso_Wilson_estimate 17.497 _reflns.Rmerge_F_obs 0.185 _reflns.observed_criterion_sigma_I -3.00 _reflns.number_all ? _reflns.observed_criterion_sigma_F ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.70 1.76 7757 ? 3959 ? 0.521 1.7 ? ? ? ? 4192 ? ? 1.089 ? ? 94.40 0.715 ? 1 1 1.76 1.83 7833 ? 4008 ? 0.396 2.2 ? ? ? ? 4166 ? ? 0.818 ? ? 96.20 0.544 ? 2 1 1.83 1.91 7716 ? 3939 ? 0.268 3.1 ? ? ? ? 4088 ? ? 0.562 ? ? 96.40 0.368 ? 3 1 1.91 2.02 8782 ? 4463 ? 0.190 4.3 ? ? ? ? 4661 ? ? 0.379 ? ? 95.80 0.260 ? 4 1 2.02 2.14 7458 ? 3786 ? 0.136 6.1 ? ? ? ? 3956 ? ? 0.267 ? ? 95.70 0.187 ? 5 1 2.14 2.31 8257 ? 4194 ? 0.090 8.4 ? ? ? ? 4342 ? ? 0.171 ? ? 96.60 0.123 ? 6 1 2.31 2.54 7957 ? 4036 ? 0.069 10.9 ? ? ? ? 4174 ? ? 0.127 ? ? 96.70 0.094 ? 7 1 2.54 2.90 8013 ? 4063 ? 0.050 14.5 ? ? ? ? 4188 ? ? 0.090 ? ? 97.00 0.069 ? 8 1 2.90 3.66 8215 ? 4152 ? 0.028 23.0 ? ? ? ? 4268 ? ? 0.045 ? ? 97.30 0.039 ? 9 1 3.66 29.123 8164 ? 4123 ? 0.021 31.5 ? ? ? ? 4247 ? ? 0.027 ? ? 97.10 0.029 ? 10 1 # _refine.entry_id 3EK3 _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 29.123 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.470 _refine.ls_number_reflns_obs 21941 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. 2-METHYL-2,4-PENTANEDIOL MOLECULES FROM THE CRYSTALLIZATION BUFFER WERE MODELED INTO THE STRUCTURE. 5. AN UNKOWN LIGAND (UNL) WAS MODELED INTO THE PUTATIVE IN THE VICINITY OF A BOUND FLAVIN MONONUCLEOTIDE (FMN) COFACTOR. ; _refine.ls_R_factor_obs 0.152 _refine.ls_R_factor_R_work 0.150 _refine.ls_R_factor_R_free 0.183 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1124 _refine.ls_number_reflns_R_work 20817 _refine.B_iso_mean 17.359 _refine.aniso_B[1][1] -1.390 _refine.aniso_B[2][2] 2.350 _refine.aniso_B[3][3] -0.950 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.955 _refine.pdbx_overall_ESU_R 0.093 _refine.pdbx_overall_ESU_R_Free 0.093 _refine.overall_SU_ML 0.062 _refine.overall_SU_B 3.552 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.B_iso_max 62.52 _refine.B_iso_min 5.93 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1437 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 63 _refine_hist.number_atoms_solvent 205 _refine_hist.number_atoms_total 1705 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 29.123 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1572 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1017 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2156 1.367 1.994 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2496 0.926 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 200 5.394 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 66 37.756 24.697 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 253 12.202 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 14.226 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 242 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1726 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 296 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 309 0.227 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1081 0.191 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 767 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 776 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 165 0.252 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 21 0.168 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 47 0.177 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 23 0.139 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1016 1.803 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 386 0.477 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1534 2.204 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 734 3.881 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 615 5.061 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.701 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.200 _refine_ls_shell.number_reflns_R_work 1521 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.213 _refine_ls_shell.R_factor_R_free 0.253 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 89 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1610 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3EK3 _struct.title 'Crystal structure of Nitroreductase with Bound FMN (YP_211706.1) from Bacteroides fragilis NCTC 9343 at 1.70 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_211706.1, Nitroreductase with Bound FMN, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, OXIDOREDUCTASE, FLAVOPROTEIN ; _struct_keywords.pdbx_keywords FLAVOPROTEIN _struct_keywords.entry_id 3EK3 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 5 ? ARG A 14 ? ASN A 4 ARG A 13 1 ? 10 HELX_P HELX_P2 2 PRO A 26 ? TYR A 39 ? PRO A 25 TYR A 38 1 ? 14 HELX_P HELX_P3 3 SER A 42 ? TYR A 46 ? SER A 41 TYR A 45 5 ? 5 HELX_P HELX_P4 4 ASN A 56 ? LYS A 73 ? ASN A 55 LYS A 72 1 ? 18 HELX_P HELX_P5 5 ASP A 76 ? HIS A 84 ? ASP A 75 HIS A 83 1 ? 9 HELX_P HELX_P6 6 TRP A 108 ? LEU A 127 ? TRP A 107 LEU A 126 1 ? 20 HELX_P HELX_P7 7 ASP A 143 ? GLY A 154 ? ASP A 142 GLY A 153 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 43 C ? ? ? 1_555 A MSE 44 N ? ? A GLY 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 44 C ? ? ? 1_555 A HIS 45 N ? ? A MSE 43 A HIS 44 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale3 covale both ? A GLY 110 C ? ? ? 1_555 A MSE 111 N ? ? A GLY 109 A MSE 110 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale4 covale both ? A MSE 111 C ? ? ? 1_555 A ASP 112 N ? ? A MSE 110 A ASP 111 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? A ASN 119 C ? ? ? 1_555 A MSE 120 N ? ? A ASN 118 A MSE 119 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale6 covale both ? A MSE 120 C ? ? ? 1_555 A PHE 121 N ? ? A MSE 119 A PHE 120 1_555 ? ? ? ? ? ? ? 1.339 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 50 ? VAL A 54 ? HIS A 49 VAL A 53 A 2 THR A 96 ? ASN A 102 ? THR A 95 ASN A 101 A 3 LYS A 160 ? GLY A 168 ? LYS A 159 GLY A 167 A 4 ALA A 130 ? ILE A 134 ? ALA A 129 ILE A 133 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 54 ? N VAL A 53 O LEU A 97 ? O LEU A 96 A 2 3 N VAL A 98 ? N VAL A 97 O VAL A 165 ? O VAL A 164 A 3 4 O CYS A 164 ? O CYS A 163 N ILE A 134 ? N ILE A 133 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 200 ? 20 'BINDING SITE FOR RESIDUE FMN A 200' AC2 Software A UNL 201 ? 7 'BINDING SITE FOR RESIDUE UNL A 201' AC3 Software A MPD 202 ? 7 'BINDING SITE FOR RESIDUE MPD A 202' AC4 Software A MPD 203 ? 7 'BINDING SITE FOR RESIDUE MPD A 203' AC5 Software A MPD 204 ? 4 'BINDING SITE FOR RESIDUE MPD A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 ARG A 14 ? ARG A 13 . ? 1_555 ? 2 AC1 20 ARG A 15 ? ARG A 14 . ? 1_555 ? 3 AC1 20 SER A 16 ? SER A 15 . ? 1_555 ? 4 AC1 20 ARG A 18 ? ARG A 17 . ? 1_555 ? 5 AC1 20 PRO A 41 ? PRO A 40 . ? 3_555 ? 6 AC1 20 SER A 42 ? SER A 41 . ? 3_555 ? 7 AC1 20 GLY A 43 ? GLY A 42 . ? 3_555 ? 8 AC1 20 HIS A 45 ? HIS A 44 . ? 3_555 ? 9 AC1 20 TYR A 92 ? TYR A 91 . ? 1_555 ? 10 AC1 20 CYS A 132 ? CYS A 131 . ? 1_555 ? 11 AC1 20 TRP A 133 ? TRP A 132 . ? 1_555 ? 12 AC1 20 ASN A 135 ? ASN A 134 . ? 1_555 ? 13 AC1 20 GLN A 136 ? GLN A 135 . ? 1_555 ? 14 AC1 20 LYS A 179 ? LYS A 178 . ? 1_555 ? 15 AC1 20 UNL C . ? UNL A 201 . ? 1_555 ? 16 AC1 20 MPD D . ? MPD A 202 . ? 1_555 ? 17 AC1 20 MPD F . ? MPD A 204 . ? 1_555 ? 18 AC1 20 HOH G . ? HOH A 217 . ? 1_555 ? 19 AC1 20 HOH G . ? HOH A 225 . ? 1_555 ? 20 AC1 20 HOH G . ? HOH A 265 . ? 1_555 ? 21 AC2 7 MSE A 44 ? MSE A 43 . ? 3_555 ? 22 AC2 7 TYR A 92 ? TYR A 91 . ? 1_555 ? 23 AC2 7 TRP A 108 ? TRP A 107 . ? 3_555 ? 24 AC2 7 ASN A 135 ? ASN A 134 . ? 1_555 ? 25 AC2 7 FMN B . ? FMN A 200 . ? 1_555 ? 26 AC2 7 MPD F . ? MPD A 204 . ? 1_555 ? 27 AC2 7 HOH G . ? HOH A 289 . ? 1_555 ? 28 AC3 7 ARG A 15 ? ARG A 14 . ? 1_555 ? 29 AC3 7 HIS A 45 ? HIS A 44 . ? 3_555 ? 30 AC3 7 FMN B . ? FMN A 200 . ? 1_555 ? 31 AC3 7 HOH G . ? HOH A 217 . ? 1_555 ? 32 AC3 7 HOH G . ? HOH A 261 . ? 1_555 ? 33 AC3 7 HOH G . ? HOH A 265 . ? 1_555 ? 34 AC3 7 HOH G . ? HOH A 368 . ? 1_555 ? 35 AC4 7 TRP A 107 ? TRP A 106 . ? 3_555 ? 36 AC4 7 GLY A 138 ? GLY A 137 . ? 1_555 ? 37 AC4 7 THR A 139 ? THR A 138 . ? 1_555 ? 38 AC4 7 LYS A 160 ? LYS A 159 . ? 1_555 ? 39 AC4 7 VAL A 161 ? VAL A 160 . ? 1_555 ? 40 AC4 7 TYR A 162 ? TYR A 161 . ? 1_555 ? 41 AC4 7 HOH G . ? HOH A 401 . ? 1_555 ? 42 AC5 4 ARG A 18 ? ARG A 17 . ? 1_555 ? 43 AC5 4 MSE A 44 ? MSE A 43 . ? 3_555 ? 44 AC5 4 FMN B . ? FMN A 200 . ? 1_555 ? 45 AC5 4 UNL C . ? UNL A 201 . ? 1_555 ? # _atom_sites.entry_id 3EK3 _atom_sites.fract_transf_matrix[1][1] 0.024624 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011943 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008583 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 LYS 3 2 ? ? ? A . n A 1 4 THR 4 3 3 THR THR A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 THR 10 9 9 THR THR A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 SER 16 15 15 SER SER A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 TYR 20 19 19 TYR TYR A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 LYS 23 22 22 LYS LYS A . n A 1 24 GLN 24 23 23 GLN GLN A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 TYR 39 38 38 TYR TYR A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 MSE 44 43 43 MSE MSE A . n A 1 45 HIS 45 44 44 HIS HIS A . n A 1 46 TYR 46 45 45 TYR TYR A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 THR 48 47 47 THR THR A . n A 1 49 TRP 49 48 48 TRP TRP A . n A 1 50 HIS 50 49 49 HIS HIS A . n A 1 51 PHE 51 50 50 PHE PHE A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 CYS 55 54 54 CYS CYS A . n A 1 56 ASN 56 55 55 ASN ASN A . n A 1 57 THR 57 56 56 THR THR A . n A 1 58 VAL 58 57 57 VAL VAL A . n A 1 59 LYS 59 58 58 LYS LYS A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ASN 64 63 63 ASN ASN A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 PHE 71 70 70 PHE PHE A . n A 1 72 ALA 72 71 71 ALA ALA A . n A 1 73 LYS 73 72 72 LYS LYS A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 LYS 77 76 76 LYS LYS A . n A 1 78 HIS 78 77 77 HIS HIS A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 GLU 81 80 80 GLU GLU A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 HIS 84 83 83 HIS HIS A . n A 1 85 SER 85 84 84 SER SER A . n A 1 86 GLU 86 85 85 GLU GLU A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 CYS 89 88 88 CYS CYS A . n A 1 90 CYS 90 89 89 CYS CYS A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 TYR 92 91 91 TYR TYR A . n A 1 93 HIS 93 92 92 HIS HIS A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 PRO 95 94 94 PRO PRO A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 ILE 99 98 98 ILE ILE A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 ASN 102 101 101 ASN ASN A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 PRO 104 103 103 PRO PRO A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 GLN 106 105 105 GLN GLN A . n A 1 107 TRP 107 106 106 TRP TRP A . n A 1 108 TRP 108 107 107 TRP TRP A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 GLY 110 109 109 GLY GLY A . n A 1 111 MSE 111 110 110 MSE MSE A . n A 1 112 ASP 112 111 111 ASP ASP A . n A 1 113 CYS 113 112 112 CYS CYS A . n A 1 114 ALA 114 113 113 ALA ALA A . n A 1 115 CYS 115 114 114 CYS CYS A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 ASN 119 118 118 ASN ASN A . n A 1 120 MSE 120 119 119 MSE MSE A . n A 1 121 PHE 121 120 120 PHE PHE A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 ALA 124 123 123 ALA ALA A . n A 1 125 THR 125 124 124 THR THR A . n A 1 126 SER 126 125 125 SER SER A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 ILE 129 128 128 ILE ILE A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 SER 131 130 130 SER SER A . n A 1 132 CYS 132 131 131 CYS CYS A . n A 1 133 TRP 133 132 132 TRP TRP A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 ASN 135 134 134 ASN ASN A . n A 1 136 GLN 136 135 135 GLN GLN A . n A 1 137 LEU 137 136 136 LEU LEU A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 THR 139 138 138 THR THR A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 CYS 141 140 140 CYS CYS A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 PRO 144 143 143 PRO PRO A . n A 1 145 GLU 145 144 144 GLU GLU A . n A 1 146 VAL 146 145 145 VAL VAL A . n A 1 147 ARG 147 146 146 ARG ARG A . n A 1 148 ALA 148 147 147 ALA ALA A . n A 1 149 TYR 149 148 148 TYR TYR A . n A 1 150 LEU 150 149 149 LEU LEU A . n A 1 151 THR 151 150 150 THR THR A . n A 1 152 SER 152 151 151 SER SER A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 GLY 154 153 153 GLY GLY A . n A 1 155 VAL 155 154 154 VAL VAL A . n A 1 156 PRO 156 155 155 PRO PRO A . n A 1 157 GLU 157 156 156 GLU GLU A . n A 1 158 ASN 158 157 157 ASN ASN A . n A 1 159 HIS 159 158 158 HIS HIS A . n A 1 160 LYS 160 159 159 LYS LYS A . n A 1 161 VAL 161 160 160 VAL VAL A . n A 1 162 TYR 162 161 161 TYR TYR A . n A 1 163 GLY 163 162 162 GLY GLY A . n A 1 164 CYS 164 163 163 CYS CYS A . n A 1 165 VAL 165 164 164 VAL VAL A . n A 1 166 ALA 166 165 165 ALA ALA A . n A 1 167 LEU 167 166 166 LEU LEU A . n A 1 168 GLY 168 167 167 GLY GLY A . n A 1 169 TYR 169 168 168 TYR TYR A . n A 1 170 LYS 170 169 169 LYS LYS A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 GLU 172 171 171 GLU GLU A . n A 1 173 GLY 173 172 172 GLY GLY A . n A 1 174 ALA 174 173 173 ALA ALA A . n A 1 175 LEU 175 174 174 LEU LEU A . n A 1 176 LEU 176 175 175 LEU LEU A . n A 1 177 LYS 177 176 176 LYS LYS A . n A 1 178 GLU 178 177 177 GLU GLU A . n A 1 179 LYS 179 178 178 LYS LYS A . n A 1 180 THR 180 179 179 THR THR A . n A 1 181 VAL 181 180 180 VAL VAL A . n A 1 182 LYS 182 181 181 LYS LYS A . n A 1 183 ALA 183 182 182 ALA ALA A . n A 1 184 GLY 184 183 183 GLY GLY A . n A 1 185 THR 185 184 184 THR THR A . n A 1 186 ILE 186 185 185 ILE ILE A . n A 1 187 THR 187 186 186 THR THR A . n A 1 188 ILE 188 187 187 ILE ILE A . n A 1 189 VAL 189 188 188 VAL VAL A . n A 1 190 GLU 190 189 189 GLU GLU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 200 200 FMN FMN A . C 3 UNL 1 201 201 UNL UNL A . D 4 MPD 1 202 202 MPD MPD A . E 4 MPD 1 203 203 MPD MPD A . F 4 MPD 1 204 204 MPD MPD A . G 5 HOH 1 205 205 HOH HOH A . G 5 HOH 2 206 206 HOH HOH A . G 5 HOH 3 207 207 HOH HOH A . G 5 HOH 4 208 208 HOH HOH A . G 5 HOH 5 209 209 HOH HOH A . G 5 HOH 6 210 210 HOH HOH A . G 5 HOH 7 211 211 HOH HOH A . G 5 HOH 8 212 212 HOH HOH A . G 5 HOH 9 213 213 HOH HOH A . G 5 HOH 10 214 214 HOH HOH A . G 5 HOH 11 215 215 HOH HOH A . G 5 HOH 12 216 216 HOH HOH A . G 5 HOH 13 217 217 HOH HOH A . G 5 HOH 14 218 218 HOH HOH A . G 5 HOH 15 219 219 HOH HOH A . G 5 HOH 16 220 220 HOH HOH A . G 5 HOH 17 221 221 HOH HOH A . G 5 HOH 18 222 222 HOH HOH A . G 5 HOH 19 223 223 HOH HOH A . G 5 HOH 20 224 224 HOH HOH A . G 5 HOH 21 225 225 HOH HOH A . G 5 HOH 22 226 226 HOH HOH A . G 5 HOH 23 227 227 HOH HOH A . G 5 HOH 24 228 228 HOH HOH A . G 5 HOH 25 229 229 HOH HOH A . G 5 HOH 26 230 230 HOH HOH A . G 5 HOH 27 231 231 HOH HOH A . G 5 HOH 28 232 232 HOH HOH A . G 5 HOH 29 233 233 HOH HOH A . G 5 HOH 30 234 234 HOH HOH A . G 5 HOH 31 235 235 HOH HOH A . G 5 HOH 32 236 236 HOH HOH A . G 5 HOH 33 237 237 HOH HOH A . G 5 HOH 34 238 238 HOH HOH A . G 5 HOH 35 239 239 HOH HOH A . G 5 HOH 36 240 240 HOH HOH A . G 5 HOH 37 241 241 HOH HOH A . G 5 HOH 38 242 242 HOH HOH A . G 5 HOH 39 243 243 HOH HOH A . G 5 HOH 40 244 244 HOH HOH A . G 5 HOH 41 245 245 HOH HOH A . G 5 HOH 42 246 246 HOH HOH A . G 5 HOH 43 247 247 HOH HOH A . G 5 HOH 44 248 248 HOH HOH A . G 5 HOH 45 249 249 HOH HOH A . G 5 HOH 46 250 250 HOH HOH A . G 5 HOH 47 251 251 HOH HOH A . G 5 HOH 48 252 252 HOH HOH A . G 5 HOH 49 253 253 HOH HOH A . G 5 HOH 50 254 254 HOH HOH A . G 5 HOH 51 255 255 HOH HOH A . G 5 HOH 52 256 256 HOH HOH A . G 5 HOH 53 257 257 HOH HOH A . G 5 HOH 54 258 258 HOH HOH A . G 5 HOH 55 259 259 HOH HOH A . G 5 HOH 56 260 260 HOH HOH A . G 5 HOH 57 261 261 HOH HOH A . G 5 HOH 58 262 262 HOH HOH A . G 5 HOH 59 263 263 HOH HOH A . G 5 HOH 60 264 264 HOH HOH A . G 5 HOH 61 265 265 HOH HOH A . G 5 HOH 62 266 266 HOH HOH A . G 5 HOH 63 267 267 HOH HOH A . G 5 HOH 64 268 268 HOH HOH A . G 5 HOH 65 269 269 HOH HOH A . G 5 HOH 66 270 270 HOH HOH A . G 5 HOH 67 271 271 HOH HOH A . G 5 HOH 68 272 272 HOH HOH A . G 5 HOH 69 273 273 HOH HOH A . G 5 HOH 70 274 274 HOH HOH A . G 5 HOH 71 275 275 HOH HOH A . G 5 HOH 72 276 276 HOH HOH A . G 5 HOH 73 277 277 HOH HOH A . G 5 HOH 74 278 278 HOH HOH A . G 5 HOH 75 279 279 HOH HOH A . G 5 HOH 76 280 280 HOH HOH A . G 5 HOH 77 281 281 HOH HOH A . G 5 HOH 78 282 282 HOH HOH A . G 5 HOH 79 283 283 HOH HOH A . G 5 HOH 80 284 284 HOH HOH A . G 5 HOH 81 285 285 HOH HOH A . G 5 HOH 82 286 286 HOH HOH A . G 5 HOH 83 287 287 HOH HOH A . G 5 HOH 84 288 288 HOH HOH A . G 5 HOH 85 289 289 HOH HOH A . G 5 HOH 86 290 290 HOH HOH A . G 5 HOH 87 291 291 HOH HOH A . G 5 HOH 88 292 292 HOH HOH A . G 5 HOH 89 293 293 HOH HOH A . G 5 HOH 90 294 294 HOH HOH A . G 5 HOH 91 295 295 HOH HOH A . G 5 HOH 92 296 296 HOH HOH A . G 5 HOH 93 297 297 HOH HOH A . G 5 HOH 94 298 298 HOH HOH A . G 5 HOH 95 299 299 HOH HOH A . G 5 HOH 96 300 300 HOH HOH A . G 5 HOH 97 301 301 HOH HOH A . G 5 HOH 98 302 302 HOH HOH A . G 5 HOH 99 303 303 HOH HOH A . G 5 HOH 100 304 304 HOH HOH A . G 5 HOH 101 305 305 HOH HOH A . G 5 HOH 102 306 306 HOH HOH A . G 5 HOH 103 307 307 HOH HOH A . G 5 HOH 104 308 308 HOH HOH A . G 5 HOH 105 309 309 HOH HOH A . G 5 HOH 106 310 310 HOH HOH A . G 5 HOH 107 311 311 HOH HOH A . G 5 HOH 108 312 312 HOH HOH A . G 5 HOH 109 313 313 HOH HOH A . G 5 HOH 110 314 314 HOH HOH A . G 5 HOH 111 315 315 HOH HOH A . G 5 HOH 112 316 316 HOH HOH A . G 5 HOH 113 317 317 HOH HOH A . G 5 HOH 114 318 318 HOH HOH A . G 5 HOH 115 319 319 HOH HOH A . G 5 HOH 116 320 320 HOH HOH A . G 5 HOH 117 321 321 HOH HOH A . G 5 HOH 118 322 322 HOH HOH A . G 5 HOH 119 323 323 HOH HOH A . G 5 HOH 120 324 324 HOH HOH A . G 5 HOH 121 325 325 HOH HOH A . G 5 HOH 122 326 326 HOH HOH A . G 5 HOH 123 327 327 HOH HOH A . G 5 HOH 124 328 328 HOH HOH A . G 5 HOH 125 329 329 HOH HOH A . G 5 HOH 126 330 330 HOH HOH A . G 5 HOH 127 331 331 HOH HOH A . G 5 HOH 128 332 332 HOH HOH A . G 5 HOH 129 333 333 HOH HOH A . G 5 HOH 130 334 334 HOH HOH A . G 5 HOH 131 335 335 HOH HOH A . G 5 HOH 132 336 336 HOH HOH A . G 5 HOH 133 337 337 HOH HOH A . G 5 HOH 134 338 338 HOH HOH A . G 5 HOH 135 339 339 HOH HOH A . G 5 HOH 136 340 340 HOH HOH A . G 5 HOH 137 341 341 HOH HOH A . G 5 HOH 138 342 342 HOH HOH A . G 5 HOH 139 343 343 HOH HOH A . G 5 HOH 140 344 344 HOH HOH A . G 5 HOH 141 345 345 HOH HOH A . G 5 HOH 142 346 346 HOH HOH A . G 5 HOH 143 347 347 HOH HOH A . G 5 HOH 144 348 348 HOH HOH A . G 5 HOH 145 349 349 HOH HOH A . G 5 HOH 146 350 350 HOH HOH A . G 5 HOH 147 351 351 HOH HOH A . G 5 HOH 148 352 352 HOH HOH A . G 5 HOH 149 353 353 HOH HOH A . G 5 HOH 150 354 354 HOH HOH A . G 5 HOH 151 355 355 HOH HOH A . G 5 HOH 152 356 356 HOH HOH A . G 5 HOH 153 357 357 HOH HOH A . G 5 HOH 154 358 358 HOH HOH A . G 5 HOH 155 359 359 HOH HOH A . G 5 HOH 156 360 360 HOH HOH A . G 5 HOH 157 361 361 HOH HOH A . G 5 HOH 158 362 362 HOH HOH A . G 5 HOH 159 363 363 HOH HOH A . G 5 HOH 160 364 364 HOH HOH A . G 5 HOH 161 365 365 HOH HOH A . G 5 HOH 162 366 366 HOH HOH A . G 5 HOH 163 367 367 HOH HOH A . G 5 HOH 164 368 368 HOH HOH A . G 5 HOH 165 369 369 HOH HOH A . G 5 HOH 166 370 370 HOH HOH A . G 5 HOH 167 371 371 HOH HOH A . G 5 HOH 168 372 372 HOH HOH A . G 5 HOH 169 373 373 HOH HOH A . G 5 HOH 170 374 374 HOH HOH A . G 5 HOH 171 375 375 HOH HOH A . G 5 HOH 172 376 376 HOH HOH A . G 5 HOH 173 377 377 HOH HOH A . G 5 HOH 174 378 378 HOH HOH A . G 5 HOH 175 379 379 HOH HOH A . G 5 HOH 176 380 380 HOH HOH A . G 5 HOH 177 381 381 HOH HOH A . G 5 HOH 178 382 382 HOH HOH A . G 5 HOH 179 383 383 HOH HOH A . G 5 HOH 180 384 384 HOH HOH A . G 5 HOH 181 385 385 HOH HOH A . G 5 HOH 182 386 386 HOH HOH A . G 5 HOH 183 387 387 HOH HOH A . G 5 HOH 184 388 388 HOH HOH A . G 5 HOH 185 389 389 HOH HOH A . G 5 HOH 186 390 390 HOH HOH A . G 5 HOH 187 391 391 HOH HOH A . G 5 HOH 188 392 392 HOH HOH A . G 5 HOH 189 393 393 HOH HOH A . G 5 HOH 190 394 394 HOH HOH A . G 5 HOH 191 395 395 HOH HOH A . G 5 HOH 192 396 396 HOH HOH A . G 5 HOH 193 397 397 HOH HOH A . G 5 HOH 194 398 398 HOH HOH A . G 5 HOH 195 399 399 HOH HOH A . G 5 HOH 196 400 400 HOH HOH A . G 5 HOH 197 401 401 HOH HOH A . G 5 HOH 198 402 402 HOH HOH A . G 5 HOH 199 403 403 HOH HOH A . G 5 HOH 200 404 404 HOH HOH A . G 5 HOH 201 405 405 HOH HOH A . G 5 HOH 202 406 406 HOH HOH A . G 5 HOH 203 407 407 HOH HOH A . G 5 HOH 204 408 408 HOH HOH A . G 5 HOH 205 409 409 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 44 A MSE 43 ? MET SELENOMETHIONINE 2 A MSE 111 A MSE 110 ? MET SELENOMETHIONINE 3 A MSE 120 A MSE 119 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10100 ? 1 MORE -95 ? 1 'SSA (A^2)' 15100 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 58.2550000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 394 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.5379 _pdbx_refine_tls.origin_y 27.6876 _pdbx_refine_tls.origin_z 17.5388 _pdbx_refine_tls.T[1][1] 0.0405 _pdbx_refine_tls.T[2][2] 0.0147 _pdbx_refine_tls.T[3][3] 0.0589 _pdbx_refine_tls.T[1][2] -0.0051 _pdbx_refine_tls.T[1][3] 0.0001 _pdbx_refine_tls.T[2][3] 0.0133 _pdbx_refine_tls.L[1][1] 0.5338 _pdbx_refine_tls.L[2][2] 0.3766 _pdbx_refine_tls.L[3][3] 1.1260 _pdbx_refine_tls.L[1][2] -0.0547 _pdbx_refine_tls.L[1][3] -0.0263 _pdbx_refine_tls.L[2][3] 0.0972 _pdbx_refine_tls.S[1][1] 0.0016 _pdbx_refine_tls.S[2][2] 0.0044 _pdbx_refine_tls.S[3][3] -0.0060 _pdbx_refine_tls.S[1][2] 0.0987 _pdbx_refine_tls.S[1][3] 0.0255 _pdbx_refine_tls.S[2][3] 0.0429 _pdbx_refine_tls.S[2][1] -0.0378 _pdbx_refine_tls.S[3][1] 0.0395 _pdbx_refine_tls.S[3][2] -0.0404 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 3 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 189 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 21 ? CZ ? A ARG 22 CZ 2 1 Y 1 A ARG 21 ? NH1 ? A ARG 22 NH1 3 1 Y 1 A ARG 21 ? NH2 ? A ARG 22 NH2 4 1 Y 1 A LYS 22 ? CD ? A LYS 23 CD 5 1 Y 1 A LYS 22 ? CE ? A LYS 23 CE 6 1 Y 1 A LYS 22 ? NZ ? A LYS 23 NZ 7 1 Y 1 A LYS 76 ? NZ ? A LYS 77 NZ 8 1 Y 1 A HIS 77 ? ND1 ? A HIS 78 ND1 9 1 Y 1 A HIS 77 ? CD2 ? A HIS 78 CD2 10 1 Y 1 A HIS 77 ? CE1 ? A HIS 78 CE1 11 1 Y 1 A HIS 77 ? NE2 ? A HIS 78 NE2 12 1 Y 1 A ARG 79 ? CZ ? A ARG 80 CZ 13 1 Y 1 A ARG 79 ? NH1 ? A ARG 80 NH1 14 1 Y 1 A ARG 79 ? NH2 ? A ARG 80 NH2 15 1 Y 1 A LYS 169 ? NZ ? A LYS 170 NZ 16 1 Y 1 A LYS 176 ? CD ? A LYS 177 CD 17 1 Y 1 A LYS 176 ? CE ? A LYS 177 CE 18 1 Y 1 A LYS 176 ? NZ ? A LYS 177 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A LYS 2 ? A LYS 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'UNKNOWN LIGAND' UNL 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH #