HEADER TPP BINDING PROTEIN 19-SEP-08 3EKI TITLE STRUCTURAL INSIGHTS OF THE MYCOPLASMA HYORHINIS PROTEIN MH-P37: A TITLE 2 PUTATIVE THIAMINE PYROPHOSPHATE TRANSPORTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH AFFINITY TRANSPORT SYSTEM PROTEIN P37; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA HYORHINIS; SOURCE 3 ORGANISM_TAXID: 2100; SOURCE 4 GENE: P37; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET31F1M1; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET31P37 KEYWDS MYCOPLASMA, P37, TPP, CELL MEMBRANE, LIPOPROTEIN, MEMBRANE, KEYWDS 2 TRANSPORT, TRANSPORT PROTEIN, PALMITATE, EXTRACYTOPLASMIC THIAMINE KEYWDS 3 BINDING LIPOPROTEIN, CYPL, TPP BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.H.SIPPEL,A.H.ROBBINS,R.REUTZEL,R.MCKENNA REVDAT 3 30-AUG-23 3EKI 1 REMARK SEQADV REVDAT 2 13-JUL-11 3EKI 1 VERSN REVDAT 1 23-JUN-09 3EKI 0 JRNL AUTH K.H.SIPPEL,A.H.ROBBINS,R.REUTZEL,S.K.BOEHLEIN,K.NAMIKI, JRNL AUTH 2 S.GOODISON,M.AGBANDJE-MCKENNA,C.J.ROSSER,R.MCKENNA JRNL TITL STRUCTURAL INSIGHTS INTO THE EXTRACYTOPLASMIC JRNL TITL 2 THIAMINE-BINDING LIPOPROTEIN P37 OF MYCOPLASMA HYORHINIS JRNL REF J.BACTERIOL. V. 191 2585 2009 JRNL REFN ISSN 0021-9193 JRNL PMID 19233924 JRNL DOI 10.1128/JB.01680-08 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.H.SIPPEL,A.H.ROBBINS,R.REUTZAL,J.DOMSIC,S.K.BOEHLEIN, REMARK 1 AUTH 2 L.GOVINDASAMY,M.AGBANDJE-MCKENNA,C.J.ROSSER,R.MCKENNA REMARK 1 TITL STRUCTURE DETERMINATION OF THE CANCER-ASSOCIATED MYCOPLASMA REMARK 1 TITL 2 HYORHINIS PROTEIN MH-P37 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D 2008 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.184 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2375 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 49563 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 ANGLE DISTANCES (A) : 0.024 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE. REMARK 4 REMARK 4 3EKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9169 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 0.1150 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28800 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3E78 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM BROMIDE, 0.1 M CITRIC REMARK 280 ACID, 40% PEG 4000, UNDER PARAFFIN OIL, PH 4.0, BATCH, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.79300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 PHE A 8 REMARK 465 ILE A 9 REMARK 465 LEU A 10 REMARK 465 PHE A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 PHE A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 ALA A 19 REMARK 465 PHE A 20 REMARK 465 ALA A 21 REMARK 465 ILE A 22 REMARK 465 SER A 23 REMARK 465 CYS A 24 REMARK 465 SER A 25 REMARK 465 ASN A 26 REMARK 465 THR A 27 REMARK 465 GLY A 28 REMARK 465 VAL A 29 REMARK 465 VAL A 30 REMARK 465 LYS A 31 REMARK 465 GLN A 32 REMARK 465 GLU A 33 REMARK 465 ASP A 34 REMARK 465 VAL A 35 REMARK 465 SER A 36 REMARK 465 VAL A 37 REMARK 465 SER A 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 393 O HOH A 1202 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 393 CD GLU A 393 OE2 -0.070 REMARK 500 GLU A 396 CD GLU A 396 OE2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 202 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 144 -30.38 -140.44 REMARK 500 ASP A 155 69.81 -154.78 REMARK 500 VAL A 163 -63.54 -125.36 REMARK 500 ASP A 164 5.89 -150.23 REMARK 500 ASN A 213 39.13 -91.81 REMARK 500 PHE A 259 -71.17 -159.52 REMARK 500 ASN A 272 -8.41 67.75 REMARK 500 TYR A 343 -174.55 -67.59 REMARK 500 ILE A 394 -57.94 -120.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 OD2 REMARK 620 2 SER A 45 O 80.2 REMARK 620 3 PRO A 118 O 115.6 161.6 REMARK 620 4 ASP A 121 OD1 111.6 90.4 91.9 REMARK 620 5 ASP A 121 OD2 72.8 114.9 80.2 50.8 REMARK 620 6 HOH A1011 O 82.4 86.6 86.5 164.9 143.0 REMARK 620 7 HOH A1074 O 150.3 76.8 85.1 87.2 134.5 77.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 326 OG1 REMARK 620 2 LYS A 327 O 92.7 REMARK 620 3 GLU A 330 O 85.9 83.3 REMARK 620 4 HOH A1151 O 81.3 171.5 90.2 REMARK 620 5 HOH A1152 O 168.5 98.8 94.9 87.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP A 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E78 RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 1.9 ANGSTROMS. REMARK 900 RELATED ID: 3E79 RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 1.9 ANGSTROMS AND COMPLEXED WITH 5-AMINO-2,4,6- REMARK 900 TRIIODOISOPHTHALIC ACID. DBREF 3EKI A 1 403 UNP P15363 P37_MYCHR 1 403 SEQADV 3EKI SER A 256 UNP P15363 PHE 256 CONFLICT SEQRES 1 A 403 MET LEU LYS LYS LEU LYS ASN PHE ILE LEU PHE SER SER SEQRES 2 A 403 ILE PHE SER PRO ILE ALA PHE ALA ILE SER CYS SER ASN SEQRES 3 A 403 THR GLY VAL VAL LYS GLN GLU ASP VAL SER VAL SER GLN SEQRES 4 A 403 GLY GLN TRP ASP LYS SER ILE THR PHE GLY VAL SER GLU SEQRES 5 A 403 ALA TRP LEU ASN LYS LYS LYS GLY GLY GLU LYS VAL ASN SEQRES 6 A 403 LYS GLU VAL ILE ASN THR PHE LEU GLU ASN PHE LYS LYS SEQRES 7 A 403 GLU PHE ASN LYS LEU LYS ASN ALA ASN ASP LYS THR LYS SEQRES 8 A 403 ASN PHE ASP ASP VAL ASP PHE LYS VAL THR PRO ILE GLN SEQRES 9 A 403 ASP PHE THR VAL LEU LEU ASN ASN LEU SER THR ASP ASN SEQRES 10 A 403 PRO GLU LEU ASP PHE GLY ILE ASN ALA SER GLY LYS LEU SEQRES 11 A 403 VAL GLU PHE LEU LYS ASN ASN PRO GLY ILE ILE THR PRO SEQRES 12 A 403 ALA LEU GLU THR THR THR ASN SER PHE VAL PHE ASP LYS SEQRES 13 A 403 GLU LYS ASP LYS PHE TYR VAL ASP GLY THR ASP SER ASP SEQRES 14 A 403 PRO LEU VAL LYS ILE ALA LYS GLU ILE ASN LYS ILE PHE SEQRES 15 A 403 VAL GLU THR PRO TYR ALA SER TRP THR ASP GLU ASN HIS SEQRES 16 A 403 LYS TRP ASN GLY ASN VAL TYR GLN SER VAL TYR ASP PRO SEQRES 17 A 403 THR VAL GLN ALA ASN PHE TYR ARG GLY MET ILE TRP ILE SEQRES 18 A 403 LYS GLY ASN ASP GLU THR LEU ALA LYS ILE LYS LYS ALA SEQRES 19 A 403 TRP ASN ASP LYS ASP TRP ASN THR PHE ARG ASN PHE GLY SEQRES 20 A 403 ILE LEU HIS GLY LYS ASP ASN SER SER SER LYS PHE LYS SEQRES 21 A 403 LEU GLU GLU THR ILE LEU LYS ASN HIS PHE GLN ASN LYS SEQRES 22 A 403 PHE THR THR LEU ASN GLU ASP ARG SER ALA HIS PRO ASN SEQRES 23 A 403 ALA TYR LYS GLN LYS SER ALA ASP THR LEU GLY THR LEU SEQRES 24 A 403 ASP ASP PHE HIS ILE ALA PHE SER GLU GLU GLY SER PHE SEQRES 25 A 403 ALA TRP THR HIS ASN LYS SER ALA THR LYS PRO PHE GLU SEQRES 26 A 403 THR LYS ALA ASN GLU LYS MET GLU ALA LEU ILE VAL THR SEQRES 27 A 403 ASN PRO ILE PRO TYR ASP VAL GLY VAL PHE ARG LYS SER SEQRES 28 A 403 VAL ASN GLN LEU GLU GLN ASN LEU ILE VAL GLN THR PHE SEQRES 29 A 403 ILE ASN LEU ALA LYS ASN LYS GLN ASP THR TYR GLY PRO SEQRES 30 A 403 LEU LEU GLY TYR ASN GLY TYR LYS LYS ILE ASP ASN PHE SEQRES 31 A 403 GLN LYS GLU ILE VAL GLU VAL TYR GLU LYS ALA ILE LYS HET TPP A 551 26 HET GOL A 800 6 HET CA A 601 1 HET CA A 602 1 HET BR A 603 1 HET BR A 604 1 HET BR A 605 1 HET BR A 606 1 HET BR A 607 1 HET BR A 608 1 HET BR A 609 1 HETNAM TPP THIAMINE DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM BR BROMIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 CA 2(CA 2+) FORMUL 6 BR 7(BR 1-) FORMUL 13 HOH *322(H2 O) HELIX 1 1 GLU A 52 ASN A 56 1 5 HELIX 2 2 LYS A 63 ALA A 86 1 24 HELIX 3 3 ASP A 105 THR A 115 1 11 HELIX 4 4 ALA A 126 ASN A 137 1 12 HELIX 5 5 ASP A 169 VAL A 183 1 15 HELIX 6 6 PRO A 186 TRP A 190 5 5 HELIX 7 7 TYR A 202 SER A 204 5 3 HELIX 8 8 ASN A 224 ASP A 237 1 14 HELIX 9 9 ASP A 239 PHE A 246 1 8 HELIX 10 10 PHE A 259 PHE A 270 1 12 HELIX 11 11 THR A 276 HIS A 284 1 9 HELIX 12 12 SER A 292 LEU A 299 5 8 HELIX 13 13 GLY A 310 THR A 315 5 6 HELIX 14 14 ASN A 353 ASN A 370 1 18 HELIX 15 15 TYR A 375 GLY A 380 5 6 HELIX 16 16 ASN A 389 ILE A 394 1 6 HELIX 17 17 ILE A 394 LYS A 403 1 10 SHEET 1 A 2 SER A 45 SER A 51 0 SHEET 2 A 2 ASP A 97 ILE A 103 1 O ASP A 97 N ILE A 46 SHEET 1 B 4 PHE A 122 ASN A 125 0 SHEET 2 B 4 VAL A 345 ARG A 349 -1 O VAL A 345 N ASN A 125 SHEET 3 B 4 ILE A 141 PHE A 152 -1 N ALA A 144 O GLY A 346 SHEET 4 B 4 TYR A 206 ALA A 212 -1 O ALA A 212 N THR A 149 SHEET 1 C 4 PHE A 122 ASN A 125 0 SHEET 2 C 4 VAL A 345 ARG A 349 -1 O VAL A 345 N ASN A 125 SHEET 3 C 4 ILE A 141 PHE A 152 -1 N ALA A 144 O GLY A 346 SHEET 4 C 4 GLY A 383 LYS A 386 -1 O LYS A 385 N GLU A 146 SHEET 1 D 5 TYR A 288 GLN A 290 0 SHEET 2 D 5 ILE A 248 HIS A 250 1 N ILE A 248 O LYS A 289 SHEET 3 D 5 ILE A 304 GLU A 308 1 O ILE A 304 N LEU A 249 SHEET 4 D 5 GLY A 217 GLY A 223 -1 N TRP A 220 O ALA A 305 SHEET 5 D 5 LYS A 331 VAL A 337 -1 O LEU A 335 N ILE A 219 LINK OD2 ASP A 43 CA CA A 601 1555 1555 2.41 LINK O SER A 45 CA CA A 601 1555 1555 2.38 LINK O PRO A 118 CA CA A 601 1555 1555 2.29 LINK OD1 ASP A 121 CA CA A 601 1555 1555 2.28 LINK OD2 ASP A 121 CA CA A 601 1555 1555 2.73 LINK OG1 THR A 326 CA CA A 602 1555 1555 2.38 LINK O LYS A 327 CA CA A 602 1555 1555 2.49 LINK O GLU A 330 CA CA A 602 1555 1555 2.29 LINK CA CA A 601 O HOH A1011 1555 1555 2.53 LINK CA CA A 601 O HOH A1074 1555 1555 2.61 LINK CA CA A 602 O HOH A1151 1555 1555 2.34 LINK CA CA A 602 O HOH A1152 1555 1555 2.29 SITE 1 AC1 21 ALA A 126 LYS A 129 ASN A 200 VAL A 201 SITE 2 AC1 21 TYR A 215 SER A 255 SER A 256 SER A 257 SITE 3 AC1 21 LYS A 258 TRP A 314 TYR A 343 ASP A 344 SITE 4 AC1 21 LEU A 379 GLY A 380 HOH A1024 HOH A1026 SITE 5 AC1 21 HOH A1047 HOH A1061 HOH A1072 HOH A1106 SITE 6 AC1 21 HOH A1124 SITE 1 AC2 9 LYS A 77 ASP A 95 VAL A 96 ASP A 97 SITE 2 AC2 9 ASP A 237 LYS A 238 LYS A 273 HOH A1066 SITE 3 AC2 9 HOH A1173 SITE 1 AC3 6 ASP A 43 SER A 45 PRO A 118 ASP A 121 SITE 2 AC3 6 HOH A1011 HOH A1074 SITE 1 AC4 5 THR A 326 LYS A 327 GLU A 330 HOH A1151 SITE 2 AC4 5 HOH A1152 SITE 1 AC5 1 GLU A 193 SITE 1 AC6 1 LYS A 78 SITE 1 AC7 4 SER A 292 ASP A 294 SER A 311 HOH A1046 SITE 1 AC8 4 ASN A 81 ASN A 85 HOH A1040 HOH A1192 SITE 1 AC9 3 HIS A 250 ARG A 281 HOH A1025 SITE 1 BC1 2 LYS A 252 LYS A 258 SITE 1 BC2 1 ASN A 87 CRYST1 49.457 67.586 59.838 90.00 106.28 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020220 0.000000 0.005905 0.00000 SCALE2 0.000000 0.014796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017410 0.00000