data_3EN3 # _entry.id 3EN3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.283 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3EN3 RCSB RCSB049529 WWPDB D_1000049529 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3EPE _pdbx_database_related.details 'Crystal Structure of the GluR4 Ligand-Binding domain in complex with glutamate' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3EN3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gill, A.' 1 'Madden, D.R.' 2 # _citation.id primary _citation.title ;Correlating AMPA receptor activation and cleft closure across subunits: crystal structures of the GluR4 ligand-binding domain in complex with full and partial agonists ; _citation.journal_abbrev Biochemistry _citation.journal_volume 47 _citation.page_first 13831 _citation.page_last 13841 _citation.year 2008 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19102704 _citation.pdbx_database_id_DOI 10.1021/bi8013196 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gill, A.' 1 primary 'Birdsey-Benson, A.' 2 primary 'Jones, B.L.' 3 primary 'Henderson, L.P.' 4 primary 'Madden, D.R.' 5 # _cell.length_a 125.906 _cell.length_b 48.749 _cell.length_c 47.766 _cell.angle_alpha 90.000 _cell.angle_beta 109.060 _cell.angle_gamma 90.000 _cell.entry_id 3EN3 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3EN3 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glutamate receptor 4,Glutamate receptor' 28737.195 1 ? ? 'ligand binding domain (UNP residues 416-528 and 654-958)' ? 2 non-polymer syn '3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE' 213.230 1 ? ? ? ? 3 water nat water 18.015 97 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GluR-4, GluR4, GluR-D, Glutamate receptor ionotropic, AMPA 4, AMPA-selective glutamate receptor 4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAE IAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRS AEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEA GVLDKLKNKWWYDKGEC ; _entity_poly.pdbx_seq_one_letter_code_can ;TVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAE IAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRS AEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEA GVLDKLKNKWWYDKGEC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 VAL n 1 3 VAL n 1 4 VAL n 1 5 THR n 1 6 THR n 1 7 ILE n 1 8 MET n 1 9 GLU n 1 10 SER n 1 11 PRO n 1 12 TYR n 1 13 VAL n 1 14 MET n 1 15 TYR n 1 16 LYS n 1 17 LYS n 1 18 ASN n 1 19 HIS n 1 20 GLU n 1 21 MET n 1 22 PHE n 1 23 GLU n 1 24 GLY n 1 25 ASN n 1 26 ASP n 1 27 LYS n 1 28 TYR n 1 29 GLU n 1 30 GLY n 1 31 TYR n 1 32 CYS n 1 33 VAL n 1 34 ASP n 1 35 LEU n 1 36 ALA n 1 37 SER n 1 38 GLU n 1 39 ILE n 1 40 ALA n 1 41 LYS n 1 42 HIS n 1 43 ILE n 1 44 GLY n 1 45 ILE n 1 46 LYS n 1 47 TYR n 1 48 LYS n 1 49 ILE n 1 50 ALA n 1 51 ILE n 1 52 VAL n 1 53 PRO n 1 54 ASP n 1 55 GLY n 1 56 LYS n 1 57 TYR n 1 58 GLY n 1 59 ALA n 1 60 ARG n 1 61 ASP n 1 62 ALA n 1 63 ASP n 1 64 THR n 1 65 LYS n 1 66 ILE n 1 67 TRP n 1 68 ASN n 1 69 GLY n 1 70 MET n 1 71 VAL n 1 72 GLY n 1 73 GLU n 1 74 LEU n 1 75 VAL n 1 76 TYR n 1 77 GLY n 1 78 LYS n 1 79 ALA n 1 80 GLU n 1 81 ILE n 1 82 ALA n 1 83 ILE n 1 84 ALA n 1 85 PRO n 1 86 LEU n 1 87 THR n 1 88 ILE n 1 89 THR n 1 90 LEU n 1 91 VAL n 1 92 ARG n 1 93 GLU n 1 94 GLU n 1 95 VAL n 1 96 ILE n 1 97 ASP n 1 98 PHE n 1 99 SER n 1 100 LYS n 1 101 PRO n 1 102 PHE n 1 103 MET n 1 104 SER n 1 105 LEU n 1 106 GLY n 1 107 ILE n 1 108 SER n 1 109 ILE n 1 110 MET n 1 111 ILE n 1 112 LYS n 1 113 LYS n 1 114 GLY n 1 115 THR n 1 116 PRO n 1 117 ILE n 1 118 GLU n 1 119 SER n 1 120 ALA n 1 121 GLU n 1 122 ASP n 1 123 LEU n 1 124 ALA n 1 125 LYS n 1 126 GLN n 1 127 THR n 1 128 GLU n 1 129 ILE n 1 130 ALA n 1 131 TYR n 1 132 GLY n 1 133 THR n 1 134 LEU n 1 135 ASP n 1 136 SER n 1 137 GLY n 1 138 SER n 1 139 THR n 1 140 LYS n 1 141 GLU n 1 142 PHE n 1 143 PHE n 1 144 ARG n 1 145 ARG n 1 146 SER n 1 147 LYS n 1 148 ILE n 1 149 ALA n 1 150 VAL n 1 151 TYR n 1 152 GLU n 1 153 LYS n 1 154 MET n 1 155 TRP n 1 156 THR n 1 157 TYR n 1 158 MET n 1 159 ARG n 1 160 SER n 1 161 ALA n 1 162 GLU n 1 163 PRO n 1 164 SER n 1 165 VAL n 1 166 PHE n 1 167 THR n 1 168 ARG n 1 169 THR n 1 170 THR n 1 171 ALA n 1 172 GLU n 1 173 GLY n 1 174 VAL n 1 175 ALA n 1 176 ARG n 1 177 VAL n 1 178 ARG n 1 179 LYS n 1 180 SER n 1 181 LYS n 1 182 GLY n 1 183 LYS n 1 184 PHE n 1 185 ALA n 1 186 PHE n 1 187 LEU n 1 188 LEU n 1 189 GLU n 1 190 SER n 1 191 THR n 1 192 MET n 1 193 ASN n 1 194 GLU n 1 195 TYR n 1 196 THR n 1 197 GLU n 1 198 GLN n 1 199 ARG n 1 200 LYS n 1 201 PRO n 1 202 CYS n 1 203 ASP n 1 204 THR n 1 205 MET n 1 206 LYS n 1 207 VAL n 1 208 GLY n 1 209 GLY n 1 210 ASN n 1 211 LEU n 1 212 ASP n 1 213 SER n 1 214 LYS n 1 215 GLY n 1 216 TYR n 1 217 GLY n 1 218 VAL n 1 219 ALA n 1 220 THR n 1 221 PRO n 1 222 LYS n 1 223 GLY n 1 224 SER n 1 225 SER n 1 226 LEU n 1 227 ARG n 1 228 THR n 1 229 PRO n 1 230 VAL n 1 231 ASN n 1 232 LEU n 1 233 ALA n 1 234 VAL n 1 235 LEU n 1 236 LYS n 1 237 LEU n 1 238 SER n 1 239 GLU n 1 240 ALA n 1 241 GLY n 1 242 VAL n 1 243 LEU n 1 244 ASP n 1 245 LYS n 1 246 LEU n 1 247 LYS n 1 248 ASN n 1 249 LYS n 1 250 TRP n 1 251 TRP n 1 252 TYR n 1 253 ASP n 1 254 LYS n 1 255 GLY n 1 256 GLU n 1 257 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 113 rat ? 'Glur4,Glutamate receptor' ? Sprague-Dawley ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'XJb(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET16-b ? ? 1 2 sample ? 116 257 rat ? 'Glur4,Glutamate receptor' ? Sprague-Dawley ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'XJb(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET16-b ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GRIA4_RAT P19493 1 ;TVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAE IAIAPLTITLVREEVIDFSKPFMSLGISIMIKK ; 416 ? 2 UNP GRIA4_RAT P19493 1 ;PIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEY TEQRKPCDTMKVGGNLDSKGYGVATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC ; 654 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EN3 A 1 ? 113 ? P19493 416 ? 528 ? 1 113 2 2 3EN3 A 116 ? 257 ? P19493 654 ? 795 ? 116 257 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EN3 GLY A 114 ? UNP P19493 ? ? LINKER 114 1 1 3EN3 THR A 115 ? UNP P19493 ? ? LINKER 115 2 2 3EN3 ARG A 227 ? UNP P19493 GLY 765 VARIANT 227 3 2 3EN3 THR A 228 ? UNP P19493 ASN 766 VARIANT 228 4 2 3EN3 PRO A 229 ? UNP P19493 ALA 767 VARIANT 229 5 2 3EN3 SER A 238 ? UNP P19493 ASN 776 VARIANT 238 6 2 3EN3 ALA A 240 ? UNP P19493 GLN 778 VARIANT 240 7 2 3EN3 VAL A 242 ? UNP P19493 LEU 780 VARIANT 242 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KAI non-polymer . '3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE' KAINATE 'C10 H15 N O4' 213.230 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3EN3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '25.5% PEG 1500, 0.05M Na-Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2006-03-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Focusing mirrors' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3EN3 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.43 _reflns.d_resolution_low 11.95 _reflns.number_all 10516 _reflns.number_obs 10025 _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.43 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 94.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3EN3 _refine.ls_d_res_high 2.430 _refine.ls_d_res_low 11.950 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 10025 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.159 _refine.ls_R_factor_R_work 0.156 _refine.ls_R_factor_R_free 0.219 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 502 _refine.B_iso_mean 43.628 _refine.aniso_B[1][1] 0.020 _refine.aniso_B[2][2] -0.210 _refine.aniso_B[3][3] 0.240 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.080 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.pdbx_overall_ESU_R 0.557 _refine.pdbx_overall_ESU_R_Free 0.256 _refine.overall_SU_ML 0.187 _refine.overall_SU_B 15.988 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.B_iso_max 94.65 _refine.B_iso_min 20.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.00 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 10516 _refine.ls_R_factor_all 0.159 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2014 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 2126 _refine_hist.d_res_high 2.430 _refine_hist.d_res_low 11.950 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2058 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2774 1.173 1.979 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 256 5.149 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 79 32.023 24.051 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 380 16.088 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 17.547 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 309 0.077 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1498 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 834 0.196 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1437 0.296 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 90 0.148 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 18 0.135 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.044 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1313 0.396 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2059 0.697 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 860 1.054 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 715 1.796 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.430 _refine_ls_shell.d_res_low 2.491 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 652 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.199 _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 687 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EN3 _struct.title 'Crystal Structure of the GluR4 Ligand-Binding domain in complex with kainate' _struct.pdbx_descriptor 'Glutamate receptor 4,Glutamate receptor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EN3 _struct_keywords.text ;GluR4, AMPA receptor, ligand-gated ion channel, ligand-binding domain, Kainate, Cell junction, Cell membrane, Glycoprotein, Ion transport, Ionic channel, Lipoprotein, MEMBRANE PROTEIN ; _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 18 ? PHE A 22 ? ASN A 18 PHE A 22 5 ? 5 HELX_P HELX_P2 2 GLU A 23 ? ASP A 26 ? GLU A 23 ASP A 26 5 ? 4 HELX_P HELX_P3 3 GLY A 30 ? GLY A 44 ? GLY A 30 GLY A 44 1 ? 15 HELX_P HELX_P4 4 ASN A 68 ? TYR A 76 ? ASN A 68 TYR A 76 1 ? 9 HELX_P HELX_P5 5 THR A 89 ? GLU A 94 ? THR A 89 GLU A 94 1 ? 6 HELX_P HELX_P6 6 SER A 119 ? LYS A 125 ? SER A 119 LYS A 125 1 ? 7 HELX_P HELX_P7 7 GLY A 137 ? SER A 146 ? GLY A 137 SER A 146 1 ? 10 HELX_P HELX_P8 8 ILE A 148 ? ALA A 161 ? ILE A 148 ALA A 161 1 ? 14 HELX_P HELX_P9 9 THR A 169 ? SER A 180 ? THR A 169 SER A 180 1 ? 12 HELX_P HELX_P10 10 SER A 190 ? GLN A 198 ? SER A 190 GLN A 198 1 ? 9 HELX_P HELX_P11 11 LEU A 226 ? ALA A 240 ? LEU A 226 ALA A 240 1 ? 15 HELX_P HELX_P12 12 GLY A 241 ? TYR A 252 ? GLY A 241 TYR A 252 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 202 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 257 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 202 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 257 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 10 A . ? SER 10 A PRO 11 A ? PRO 11 A 1 -4.59 2 GLU 162 A . ? GLU 162 A PRO 163 A ? PRO 163 A 1 1.40 3 LYS 200 A . ? LYS 200 A PRO 201 A ? PRO 201 A 1 5.10 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 47 ? ILE A 51 ? TYR A 47 ILE A 51 A 2 VAL A 2 ? THR A 6 ? VAL A 2 THR A 6 A 3 ILE A 81 ? ALA A 82 ? ILE A 81 ALA A 82 B 1 MET A 14 ? TYR A 15 ? MET A 14 TYR A 15 B 2 TYR A 28 ? GLU A 29 ? TYR A 28 GLU A 29 C 1 ILE A 96 ? PHE A 98 ? ILE A 96 PHE A 98 C 2 ALA A 219 ? PRO A 221 ? ALA A 219 PRO A 221 D 1 MET A 103 ? LEU A 105 ? MET A 103 LEU A 105 D 2 LYS A 214 ? TYR A 216 ? LYS A 214 TYR A 216 E 1 ALA A 130 ? GLY A 132 ? ALA A 130 GLY A 132 E 2 PHE A 184 ? GLU A 189 ? PHE A 184 GLU A 189 E 3 ILE A 107 ? LYS A 112 ? ILE A 107 LYS A 112 E 4 THR A 204 ? VAL A 207 ? THR A 204 VAL A 207 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 48 ? O LYS A 48 N VAL A 4 ? N VAL A 4 A 2 3 N THR A 5 ? N THR A 5 O ILE A 81 ? O ILE A 81 B 1 2 N MET A 14 ? N MET A 14 O GLU A 29 ? O GLU A 29 C 1 2 N ASP A 97 ? N ASP A 97 O THR A 220 ? O THR A 220 D 1 2 N LEU A 105 ? N LEU A 105 O LYS A 214 ? O LYS A 214 E 1 2 N GLY A 132 ? N GLY A 132 O LEU A 187 ? O LEU A 187 E 2 3 O PHE A 186 ? O PHE A 186 N MET A 110 ? N MET A 110 E 3 4 N ILE A 111 ? N ILE A 111 O MET A 205 ? O MET A 205 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE KAI A 999' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLU A 9 ? GLU A 9 . ? 1_555 ? 2 AC1 11 TYR A 57 ? TYR A 57 . ? 1_555 ? 3 AC1 11 PRO A 85 ? PRO A 85 . ? 1_555 ? 4 AC1 11 THR A 87 ? THR A 87 . ? 1_555 ? 5 AC1 11 ARG A 92 ? ARG A 92 . ? 1_555 ? 6 AC1 11 GLY A 137 ? GLY A 137 . ? 1_555 ? 7 AC1 11 SER A 138 ? SER A 138 . ? 1_555 ? 8 AC1 11 THR A 139 ? THR A 139 . ? 1_555 ? 9 AC1 11 GLU A 189 ? GLU A 189 . ? 1_555 ? 10 AC1 11 HOH C . ? HOH A 1040 . ? 1_555 ? 11 AC1 11 HOH C . ? HOH A 1053 . ? 1_555 ? # _database_PDB_matrix.entry_id 3EN3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3EN3 _atom_sites.fract_transf_matrix[1][1] 0.007942 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002744 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020513 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022150 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 MET 21 21 21 MET MET A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 MET 103 103 103 MET MET A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 MET 110 110 110 MET MET A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 GLN 126 126 126 GLN GLN A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 LYS 153 153 153 LYS LYS A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 TRP 155 155 155 TRP TRP A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 MET 158 158 158 MET MET A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 SER 160 160 160 SER SER A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 ALA 171 171 171 ALA ALA A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 PHE 184 184 184 PHE PHE A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 PHE 186 186 186 PHE PHE A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 MET 192 192 192 MET MET A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 TYR 195 195 195 TYR TYR A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 GLN 198 198 198 GLN GLN A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 PRO 201 201 201 PRO PRO A . n A 1 202 CYS 202 202 202 CYS CYS A . n A 1 203 ASP 203 203 203 ASP ASP A . n A 1 204 THR 204 204 204 THR THR A . n A 1 205 MET 205 205 205 MET MET A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 GLY 208 208 208 GLY GLY A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 ASN 210 210 210 ASN ASN A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 ASP 212 212 212 ASP ASP A . n A 1 213 SER 213 213 213 SER SER A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 TYR 216 216 216 TYR TYR A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 VAL 218 218 218 VAL VAL A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 THR 220 220 220 THR THR A . n A 1 221 PRO 221 221 221 PRO PRO A . n A 1 222 LYS 222 222 222 LYS LYS A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 SER 224 224 224 SER SER A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 ARG 227 227 227 ARG ARG A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 PRO 229 229 229 PRO PRO A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 LYS 236 236 236 LYS LYS A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 SER 238 238 238 SER SER A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 ASP 244 244 244 ASP ASP A . n A 1 245 LYS 245 245 245 LYS LYS A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 LYS 247 247 247 LYS LYS A . n A 1 248 ASN 248 248 248 ASN ASN A . n A 1 249 LYS 249 249 249 LYS LYS A . n A 1 250 TRP 250 250 250 TRP TRP A . n A 1 251 TRP 251 251 251 TRP TRP A . n A 1 252 TYR 252 252 252 TYR TYR A . n A 1 253 ASP 253 253 253 ASP ASP A . n A 1 254 LYS 254 254 254 LYS LYS A . n A 1 255 GLY 255 255 255 GLY GLY A . n A 1 256 GLU 256 256 256 GLU GLU A . n A 1 257 CYS 257 257 257 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KAI 1 999 999 KAI KAI A . C 3 HOH 1 1000 1 HOH HOH A . C 3 HOH 2 1001 2 HOH HOH A . C 3 HOH 3 1002 3 HOH HOH A . C 3 HOH 4 1003 4 HOH HOH A . C 3 HOH 5 1004 5 HOH HOH A . C 3 HOH 6 1005 6 HOH HOH A . C 3 HOH 7 1006 7 HOH HOH A . C 3 HOH 8 1007 8 HOH HOH A . C 3 HOH 9 1008 9 HOH HOH A . C 3 HOH 10 1009 10 HOH HOH A . C 3 HOH 11 1010 11 HOH HOH A . C 3 HOH 12 1011 12 HOH HOH A . C 3 HOH 13 1012 13 HOH HOH A . C 3 HOH 14 1013 14 HOH HOH A . C 3 HOH 15 1014 15 HOH HOH A . C 3 HOH 16 1015 16 HOH HOH A . C 3 HOH 17 1016 17 HOH HOH A . C 3 HOH 18 1017 18 HOH HOH A . C 3 HOH 19 1018 19 HOH HOH A . C 3 HOH 20 1019 20 HOH HOH A . C 3 HOH 21 1020 21 HOH HOH A . C 3 HOH 22 1021 22 HOH HOH A . C 3 HOH 23 1022 23 HOH HOH A . C 3 HOH 24 1023 24 HOH HOH A . C 3 HOH 25 1024 25 HOH HOH A . C 3 HOH 26 1025 26 HOH HOH A . C 3 HOH 27 1026 27 HOH HOH A . C 3 HOH 28 1027 28 HOH HOH A . C 3 HOH 29 1028 29 HOH HOH A . C 3 HOH 30 1029 30 HOH HOH A . C 3 HOH 31 1030 31 HOH HOH A . C 3 HOH 32 1031 32 HOH HOH A . C 3 HOH 33 1032 33 HOH HOH A . C 3 HOH 34 1033 34 HOH HOH A . C 3 HOH 35 1034 35 HOH HOH A . C 3 HOH 36 1035 36 HOH HOH A . C 3 HOH 37 1036 37 HOH HOH A . C 3 HOH 38 1037 38 HOH HOH A . C 3 HOH 39 1038 39 HOH HOH A . C 3 HOH 40 1039 40 HOH HOH A . C 3 HOH 41 1040 41 HOH HOH A . C 3 HOH 42 1041 42 HOH HOH A . C 3 HOH 43 1042 43 HOH HOH A . C 3 HOH 44 1043 44 HOH HOH A . C 3 HOH 45 1044 45 HOH HOH A . C 3 HOH 46 1045 46 HOH HOH A . C 3 HOH 47 1046 47 HOH HOH A . C 3 HOH 48 1047 48 HOH HOH A . C 3 HOH 49 1048 49 HOH HOH A . C 3 HOH 50 1049 50 HOH HOH A . C 3 HOH 51 1050 51 HOH HOH A . C 3 HOH 52 1051 52 HOH HOH A . C 3 HOH 53 1052 53 HOH HOH A . C 3 HOH 54 1053 54 HOH HOH A . C 3 HOH 55 1054 55 HOH HOH A . C 3 HOH 56 1055 56 HOH HOH A . C 3 HOH 57 1056 57 HOH HOH A . C 3 HOH 58 1057 58 HOH HOH A . C 3 HOH 59 1058 59 HOH HOH A . C 3 HOH 60 1059 60 HOH HOH A . C 3 HOH 61 1060 61 HOH HOH A . C 3 HOH 62 1061 62 HOH HOH A . C 3 HOH 63 1062 63 HOH HOH A . C 3 HOH 64 1063 64 HOH HOH A . C 3 HOH 65 1064 65 HOH HOH A . C 3 HOH 66 1065 66 HOH HOH A . C 3 HOH 67 1066 67 HOH HOH A . C 3 HOH 68 1067 68 HOH HOH A . C 3 HOH 69 1068 69 HOH HOH A . C 3 HOH 70 1069 70 HOH HOH A . C 3 HOH 71 1070 71 HOH HOH A . C 3 HOH 72 1071 72 HOH HOH A . C 3 HOH 73 1072 73 HOH HOH A . C 3 HOH 74 1073 74 HOH HOH A . C 3 HOH 75 1074 75 HOH HOH A . C 3 HOH 76 1075 76 HOH HOH A . C 3 HOH 77 1076 77 HOH HOH A . C 3 HOH 78 1077 78 HOH HOH A . C 3 HOH 79 1078 79 HOH HOH A . C 3 HOH 80 1079 80 HOH HOH A . C 3 HOH 81 1080 81 HOH HOH A . C 3 HOH 82 1081 82 HOH HOH A . C 3 HOH 83 1082 83 HOH HOH A . C 3 HOH 84 1083 84 HOH HOH A . C 3 HOH 85 1084 85 HOH HOH A . C 3 HOH 86 1085 86 HOH HOH A . C 3 HOH 87 1086 87 HOH HOH A . C 3 HOH 88 1087 88 HOH HOH A . C 3 HOH 89 1088 89 HOH HOH A . C 3 HOH 90 1089 90 HOH HOH A . C 3 HOH 91 1090 91 HOH HOH A . C 3 HOH 92 1091 92 HOH HOH A . C 3 HOH 93 1092 93 HOH HOH A . C 3 HOH 94 1093 94 HOH HOH A . C 3 HOH 95 1094 95 HOH HOH A . C 3 HOH 96 1095 96 HOH HOH A . C 3 HOH 97 1096 97 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C 2 1 A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-04-02 4 'Structure model' 1 3 2017-07-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Refinement description' 6 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 4 'Structure model' software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 10.7600 15.7850 10.9010 -0.2035 -0.2155 -0.2909 0.0440 -0.0177 0.0058 4.9532 4.1363 3.8863 -0.7797 0.5450 0.2694 -0.1351 0.1806 -0.0456 -0.5100 -0.0685 -0.4211 0.5187 0.0524 0.0678 'X-RAY DIFFRACTION' 2 ? refined 18.1220 33.5820 -3.7200 -0.1948 -0.1547 -0.1516 -0.0369 0.0162 -0.0400 6.2127 7.0591 5.6564 2.8659 0.4059 2.0739 -0.3166 0.4737 -0.1570 0.3655 0.0487 -0.6613 -0.4429 -0.3842 0.3855 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 103 ? . . . . 'X-RAY DIFFRACTION' ? 2 1 A 215 A 257 ? . . . . 'X-RAY DIFFRACTION' ? 3 2 A 104 A 214 ? . . . . 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 3 XDS . ? ? ? ? 'data reduction' ? ? ? 4 XDS . ? ? ? ? 'data scaling' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE' KAI 3 water HOH #