HEADER OXIDOREDUCTASE 25-SEP-08 3ENN TITLE 2.1A CRYSTAL STRUCTURE OF GLUCOSE/RIBITOL DEHYDROGENASE FROM BRUCELLA TITLE 2 MELITENSIS (P43212) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE/RIBITOL DEHYDROGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS; SOURCE 3 ORGANISM_TAXID: 29459; SOURCE 4 STRAIN: BIOVAR ABORTUS 2308; SOURCE 5 GENE: BMEI1477, BRUCELLA MELITENSIS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS BRUCELLA, MELITENSIS, GLUCOSE, RIBITOL, DEHYDROGENASE, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 21-FEB-24 3ENN 1 REMARK REVDAT 3 16-NOV-11 3ENN 1 VERSN HETATM REVDAT 2 24-FEB-09 3ENN 1 VERSN REVDAT 1 25-NOV-08 3ENN 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID) JRNL TITL 2.1A CRYSTAL STRUCTURE OF GLUCOSE/RIBITOL DEHYDROGENASE FROM JRNL TITL 2 BRUCELLA MELITENSIS (P43212) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2938 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.218 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.470 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7146 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9640 ; 1.369 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 951 ; 5.595 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 292 ;35.654 ;24.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1247 ;17.508 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;19.497 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1134 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5284 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4494 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4972 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 636 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4779 ; 0.693 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7440 ; 1.184 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2581 ; 1.862 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2197 ; 3.038 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ENN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTI-LAYER OPTICS MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57871 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% MPD, 0.1M TRIS PH 8.5, 0.2M REMARK 280 AMMONIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 344 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 188 REMARK 465 MET A 189 REMARK 465 THR A 190 REMARK 465 GLY A 191 REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 ASN A 194 REMARK 465 GLU A 195 REMARK 465 GLY B -3 REMARK 465 ALA B 188 REMARK 465 MET B 189 REMARK 465 THR B 190 REMARK 465 GLY B 191 REMARK 465 LYS B 192 REMARK 465 LEU B 193 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 187 REMARK 465 ALA C 188 REMARK 465 MET C 189 REMARK 465 THR C 190 REMARK 465 GLY C 191 REMARK 465 LYS C 192 REMARK 465 LEU C 193 REMARK 465 ASN C 194 REMARK 465 GLU C 195 REMARK 465 LYS C 196 REMARK 465 GLN C 197 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 SER D 187 REMARK 465 ALA D 188 REMARK 465 MET D 189 REMARK 465 THR D 190 REMARK 465 GLY D 191 REMARK 465 LYS D 192 REMARK 465 LEU D 193 REMARK 465 ASN D 194 REMARK 465 GLU D 195 REMARK 465 LYS D 196 REMARK 465 GLN D 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 24 OE1 GLU A 49 2.13 REMARK 500 NH1 ARG B 92 O HOH B 270 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 173 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 112 -55.51 -120.77 REMARK 500 THR A 138 -146.20 -100.21 REMARK 500 ASN A 239 14.30 -152.81 REMARK 500 THR B 138 -141.30 -97.52 REMARK 500 ASN B 239 12.25 -148.51 REMARK 500 LEU C 112 -54.20 -120.92 REMARK 500 THR C 138 -142.63 -99.65 REMARK 500 ASN C 239 16.66 -152.69 REMARK 500 LEU D 112 -56.62 -124.45 REMARK 500 THR D 138 -142.86 -101.97 REMARK 500 ASN D 239 15.87 -147.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BRABA.00010.B RELATED DB: TARGETDB DBREF 3ENN A 1 245 UNP Q8YFP3 Q8YFP3_BRUME 1 245 DBREF 3ENN B 1 245 UNP Q8YFP3 Q8YFP3_BRUME 1 245 DBREF 3ENN C 1 245 UNP Q8YFP3 Q8YFP3_BRUME 1 245 DBREF 3ENN D 1 245 UNP Q8YFP3 Q8YFP3_BRUME 1 245 SEQADV 3ENN GLY A -3 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN PRO A -2 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN GLY A -1 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN SER A 0 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN GLY B -3 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN PRO B -2 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN GLY B -1 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN SER B 0 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN GLY C -3 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN PRO C -2 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN GLY C -1 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN SER C 0 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN GLY D -3 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN PRO D -2 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN GLY D -1 UNP Q8YFP3 EXPRESSION TAG SEQADV 3ENN SER D 0 UNP Q8YFP3 EXPRESSION TAG SEQRES 1 A 249 GLY PRO GLY SER MET PHE ASP LEU THR GLY ARG LYS ALA SEQRES 2 A 249 LEU VAL THR GLY ALA THR GLY GLY LEU GLY GLU ALA ILE SEQRES 3 A 249 ALA ARG ALA LEU HIS ALA GLN GLY ALA ILE VAL GLY LEU SEQRES 4 A 249 HIS GLY THR ARG GLU GLU LYS LEU LYS GLU LEU ALA ALA SEQRES 5 A 249 GLU LEU GLY GLU ARG ILE PHE VAL PHE PRO ALA ASN LEU SEQRES 6 A 249 SER ASP ARG GLU ALA VAL LYS ALA LEU GLY GLN LYS ALA SEQRES 7 A 249 GLU GLU GLU MET GLY GLY VAL ASP ILE LEU VAL ASN ASN SEQRES 8 A 249 ALA GLY ILE THR ARG ASP GLY LEU PHE VAL ARG MET SER SEQRES 9 A 249 ASP GLU ASP TRP ASP ALA VAL LEU THR VAL ASN LEU THR SEQRES 10 A 249 SER VAL PHE ASN LEU THR ARG GLU LEU THR HIS PRO MET SEQRES 11 A 249 MET ARG ARG ARG ASN GLY ARG ILE ILE ASN ILE THR SER SEQRES 12 A 249 ILE VAL GLY VAL THR GLY ASN PRO GLY GLN ALA ASN TYR SEQRES 13 A 249 CYS ALA SER LYS ALA GLY LEU ILE GLY PHE SER LYS SER SEQRES 14 A 249 LEU ALA GLN GLU ILE ALA SER ARG ASN VAL THR VAL ASN SEQRES 15 A 249 CYS ILE ALA PRO GLY PHE ILE GLU SER ALA MET THR GLY SEQRES 16 A 249 LYS LEU ASN GLU LYS GLN LYS ASP ALA ILE MET GLY ASN SEQRES 17 A 249 ILE PRO MET LYS ARG MET GLY VAL GLY ALA ASP ILE ALA SEQRES 18 A 249 ALA ALA VAL VAL TYR LEU ALA SER ASP GLU ALA ALA TYR SEQRES 19 A 249 VAL THR GLY GLN THR LEU HIS VAL ASN GLY GLY MET ALA SEQRES 20 A 249 MET ILE SEQRES 1 B 249 GLY PRO GLY SER MET PHE ASP LEU THR GLY ARG LYS ALA SEQRES 2 B 249 LEU VAL THR GLY ALA THR GLY GLY LEU GLY GLU ALA ILE SEQRES 3 B 249 ALA ARG ALA LEU HIS ALA GLN GLY ALA ILE VAL GLY LEU SEQRES 4 B 249 HIS GLY THR ARG GLU GLU LYS LEU LYS GLU LEU ALA ALA SEQRES 5 B 249 GLU LEU GLY GLU ARG ILE PHE VAL PHE PRO ALA ASN LEU SEQRES 6 B 249 SER ASP ARG GLU ALA VAL LYS ALA LEU GLY GLN LYS ALA SEQRES 7 B 249 GLU GLU GLU MET GLY GLY VAL ASP ILE LEU VAL ASN ASN SEQRES 8 B 249 ALA GLY ILE THR ARG ASP GLY LEU PHE VAL ARG MET SER SEQRES 9 B 249 ASP GLU ASP TRP ASP ALA VAL LEU THR VAL ASN LEU THR SEQRES 10 B 249 SER VAL PHE ASN LEU THR ARG GLU LEU THR HIS PRO MET SEQRES 11 B 249 MET ARG ARG ARG ASN GLY ARG ILE ILE ASN ILE THR SER SEQRES 12 B 249 ILE VAL GLY VAL THR GLY ASN PRO GLY GLN ALA ASN TYR SEQRES 13 B 249 CYS ALA SER LYS ALA GLY LEU ILE GLY PHE SER LYS SER SEQRES 14 B 249 LEU ALA GLN GLU ILE ALA SER ARG ASN VAL THR VAL ASN SEQRES 15 B 249 CYS ILE ALA PRO GLY PHE ILE GLU SER ALA MET THR GLY SEQRES 16 B 249 LYS LEU ASN GLU LYS GLN LYS ASP ALA ILE MET GLY ASN SEQRES 17 B 249 ILE PRO MET LYS ARG MET GLY VAL GLY ALA ASP ILE ALA SEQRES 18 B 249 ALA ALA VAL VAL TYR LEU ALA SER ASP GLU ALA ALA TYR SEQRES 19 B 249 VAL THR GLY GLN THR LEU HIS VAL ASN GLY GLY MET ALA SEQRES 20 B 249 MET ILE SEQRES 1 C 249 GLY PRO GLY SER MET PHE ASP LEU THR GLY ARG LYS ALA SEQRES 2 C 249 LEU VAL THR GLY ALA THR GLY GLY LEU GLY GLU ALA ILE SEQRES 3 C 249 ALA ARG ALA LEU HIS ALA GLN GLY ALA ILE VAL GLY LEU SEQRES 4 C 249 HIS GLY THR ARG GLU GLU LYS LEU LYS GLU LEU ALA ALA SEQRES 5 C 249 GLU LEU GLY GLU ARG ILE PHE VAL PHE PRO ALA ASN LEU SEQRES 6 C 249 SER ASP ARG GLU ALA VAL LYS ALA LEU GLY GLN LYS ALA SEQRES 7 C 249 GLU GLU GLU MET GLY GLY VAL ASP ILE LEU VAL ASN ASN SEQRES 8 C 249 ALA GLY ILE THR ARG ASP GLY LEU PHE VAL ARG MET SER SEQRES 9 C 249 ASP GLU ASP TRP ASP ALA VAL LEU THR VAL ASN LEU THR SEQRES 10 C 249 SER VAL PHE ASN LEU THR ARG GLU LEU THR HIS PRO MET SEQRES 11 C 249 MET ARG ARG ARG ASN GLY ARG ILE ILE ASN ILE THR SER SEQRES 12 C 249 ILE VAL GLY VAL THR GLY ASN PRO GLY GLN ALA ASN TYR SEQRES 13 C 249 CYS ALA SER LYS ALA GLY LEU ILE GLY PHE SER LYS SER SEQRES 14 C 249 LEU ALA GLN GLU ILE ALA SER ARG ASN VAL THR VAL ASN SEQRES 15 C 249 CYS ILE ALA PRO GLY PHE ILE GLU SER ALA MET THR GLY SEQRES 16 C 249 LYS LEU ASN GLU LYS GLN LYS ASP ALA ILE MET GLY ASN SEQRES 17 C 249 ILE PRO MET LYS ARG MET GLY VAL GLY ALA ASP ILE ALA SEQRES 18 C 249 ALA ALA VAL VAL TYR LEU ALA SER ASP GLU ALA ALA TYR SEQRES 19 C 249 VAL THR GLY GLN THR LEU HIS VAL ASN GLY GLY MET ALA SEQRES 20 C 249 MET ILE SEQRES 1 D 249 GLY PRO GLY SER MET PHE ASP LEU THR GLY ARG LYS ALA SEQRES 2 D 249 LEU VAL THR GLY ALA THR GLY GLY LEU GLY GLU ALA ILE SEQRES 3 D 249 ALA ARG ALA LEU HIS ALA GLN GLY ALA ILE VAL GLY LEU SEQRES 4 D 249 HIS GLY THR ARG GLU GLU LYS LEU LYS GLU LEU ALA ALA SEQRES 5 D 249 GLU LEU GLY GLU ARG ILE PHE VAL PHE PRO ALA ASN LEU SEQRES 6 D 249 SER ASP ARG GLU ALA VAL LYS ALA LEU GLY GLN LYS ALA SEQRES 7 D 249 GLU GLU GLU MET GLY GLY VAL ASP ILE LEU VAL ASN ASN SEQRES 8 D 249 ALA GLY ILE THR ARG ASP GLY LEU PHE VAL ARG MET SER SEQRES 9 D 249 ASP GLU ASP TRP ASP ALA VAL LEU THR VAL ASN LEU THR SEQRES 10 D 249 SER VAL PHE ASN LEU THR ARG GLU LEU THR HIS PRO MET SEQRES 11 D 249 MET ARG ARG ARG ASN GLY ARG ILE ILE ASN ILE THR SER SEQRES 12 D 249 ILE VAL GLY VAL THR GLY ASN PRO GLY GLN ALA ASN TYR SEQRES 13 D 249 CYS ALA SER LYS ALA GLY LEU ILE GLY PHE SER LYS SER SEQRES 14 D 249 LEU ALA GLN GLU ILE ALA SER ARG ASN VAL THR VAL ASN SEQRES 15 D 249 CYS ILE ALA PRO GLY PHE ILE GLU SER ALA MET THR GLY SEQRES 16 D 249 LYS LEU ASN GLU LYS GLN LYS ASP ALA ILE MET GLY ASN SEQRES 17 D 249 ILE PRO MET LYS ARG MET GLY VAL GLY ALA ASP ILE ALA SEQRES 18 D 249 ALA ALA VAL VAL TYR LEU ALA SER ASP GLU ALA ALA TYR SEQRES 19 D 249 VAL THR GLY GLN THR LEU HIS VAL ASN GLY GLY MET ALA SEQRES 20 D 249 MET ILE FORMUL 5 HOH *359(H2 O) HELIX 1 1 GLY A 16 GLN A 29 1 14 HELIX 2 2 ARG A 39 GLY A 51 1 13 HELIX 3 3 ASP A 63 GLY A 79 1 17 HELIX 4 4 LEU A 95 MET A 99 5 5 HELIX 5 5 SER A 100 LEU A 112 1 13 HELIX 6 6 LEU A 112 ARG A 129 1 18 HELIX 7 7 ILE A 140 GLY A 145 1 6 HELIX 8 8 GLN A 149 ALA A 171 1 23 HELIX 9 9 LYS A 196 ASN A 204 1 9 HELIX 10 10 VAL A 212 SER A 225 1 14 HELIX 11 11 ASP A 226 ALA A 229 5 4 HELIX 12 12 GLY B 16 GLN B 29 1 14 HELIX 13 13 ARG B 39 GLY B 51 1 13 HELIX 14 14 ASP B 63 MET B 78 1 16 HELIX 15 15 LEU B 95 MET B 99 5 5 HELIX 16 16 SER B 100 LEU B 112 1 13 HELIX 17 17 LEU B 112 ARG B 129 1 18 HELIX 18 18 SER B 139 GLY B 145 1 7 HELIX 19 19 GLN B 149 ALA B 171 1 23 HELIX 20 20 ASN B 194 GLY B 203 1 10 HELIX 21 21 VAL B 212 SER B 225 1 14 HELIX 22 22 ASP B 226 ALA B 229 5 4 HELIX 23 23 GLY C 16 GLN C 29 1 14 HELIX 24 24 ARG C 39 GLY C 51 1 13 HELIX 25 25 ASP C 63 MET C 78 1 16 HELIX 26 26 LEU C 95 MET C 99 5 5 HELIX 27 27 SER C 100 LEU C 112 1 13 HELIX 28 28 LEU C 112 ARG C 130 1 19 HELIX 29 29 SER C 139 GLY C 145 1 7 HELIX 30 30 GLN C 149 ALA C 171 1 23 HELIX 31 31 LYS C 198 ASN C 204 1 7 HELIX 32 32 VAL C 212 SER C 225 1 14 HELIX 33 33 ASP C 226 ALA C 229 5 4 HELIX 34 34 GLY D 16 GLN D 29 1 14 HELIX 35 35 ARG D 39 GLY D 51 1 13 HELIX 36 36 ASP D 63 GLY D 79 1 17 HELIX 37 37 LEU D 95 MET D 99 5 5 HELIX 38 38 SER D 100 LEU D 112 1 13 HELIX 39 39 LEU D 112 ARG D 129 1 18 HELIX 40 40 ILE D 140 GLY D 145 1 6 HELIX 41 41 GLN D 149 ALA D 171 1 23 HELIX 42 42 LYS D 198 GLY D 203 1 6 HELIX 43 43 VAL D 212 SER D 225 1 14 HELIX 44 44 ASP D 226 ALA D 229 5 4 SHEET 1 A 7 ILE A 54 PRO A 58 0 SHEET 2 A 7 ILE A 32 GLY A 37 1 N LEU A 35 O PHE A 57 SHEET 3 A 7 LYS A 8 VAL A 11 1 N ALA A 9 O GLY A 34 SHEET 4 A 7 ILE A 83 ASN A 86 1 O VAL A 85 N LEU A 10 SHEET 5 A 7 GLY A 132 ILE A 137 1 O ILE A 135 N LEU A 84 SHEET 6 A 7 VAL A 175 PRO A 182 1 O ASN A 178 N ASN A 136 SHEET 7 A 7 THR A 235 VAL A 238 1 O LEU A 236 N CYS A 179 SHEET 1 B 7 ILE B 54 PRO B 58 0 SHEET 2 B 7 ILE B 32 GLY B 37 1 N LEU B 35 O PHE B 55 SHEET 3 B 7 LYS B 8 VAL B 11 1 N ALA B 9 O GLY B 34 SHEET 4 B 7 ILE B 83 ASN B 86 1 O ILE B 83 N LEU B 10 SHEET 5 B 7 GLY B 132 ILE B 137 1 O ILE B 135 N LEU B 84 SHEET 6 B 7 VAL B 175 PRO B 182 1 O ASN B 178 N ASN B 136 SHEET 7 B 7 THR B 235 VAL B 238 1 O LEU B 236 N CYS B 179 SHEET 1 C 7 ILE C 54 PRO C 58 0 SHEET 2 C 7 ILE C 32 GLY C 37 1 N LEU C 35 O PHE C 55 SHEET 3 C 7 LYS C 8 VAL C 11 1 N ALA C 9 O GLY C 34 SHEET 4 C 7 ILE C 83 ASN C 86 1 O VAL C 85 N LEU C 10 SHEET 5 C 7 GLY C 132 ILE C 137 1 O ILE C 135 N LEU C 84 SHEET 6 C 7 VAL C 175 PRO C 182 1 O ASN C 178 N ASN C 136 SHEET 7 C 7 THR C 235 VAL C 238 1 O LEU C 236 N CYS C 179 SHEET 1 D 7 ILE D 54 PRO D 58 0 SHEET 2 D 7 ILE D 32 GLY D 37 1 N LEU D 35 O PHE D 55 SHEET 3 D 7 LYS D 8 VAL D 11 1 N ALA D 9 O GLY D 34 SHEET 4 D 7 ILE D 83 ASN D 86 1 O VAL D 85 N LEU D 10 SHEET 5 D 7 GLY D 132 ILE D 137 1 O ARG D 133 N LEU D 84 SHEET 6 D 7 VAL D 175 PRO D 182 1 O ASN D 178 N ASN D 136 SHEET 7 D 7 THR D 235 VAL D 238 1 O LEU D 236 N ALA D 181 CRYST1 119.500 119.500 136.000 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008368 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007353 0.00000