HEADER HYDROLASE 25-SEP-08 3ENP TITLE CRYSTAL STRUCTURE OF HUMAN CGI121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TP53RK-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PRPK-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CGI-121, MY019, TPRKB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3 KEYWDS KEOPS COMPLEX TELOMERE KINASE REGULATOR, NUCLEUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.Z.HAFFANI,D.F.CECCARELLI,D.NECULAI,D.Y.MAO,F.SICHERI REVDAT 6 13-NOV-24 3ENP 1 SEQADV LINK REVDAT 5 13-JUL-11 3ENP 1 VERSN REVDAT 4 12-JAN-10 3ENP 1 JRNL REVDAT 3 24-FEB-09 3ENP 1 VERSN REVDAT 2 18-NOV-08 3ENP 1 AUTHOR REVDAT 1 04-NOV-08 3ENP 0 JRNL AUTH D.Y.MAO,D.NECULAI,M.DOWNEY,S.ORLICKY,Y.Z.HAFFANI, JRNL AUTH 2 D.F.CECCARELLI,J.S.HO,R.K.SZILARD,W.ZHANG,C.S.HO,L.WAN, JRNL AUTH 3 C.FARES,S.RUMPEL,I.KURINOV,C.H.ARROWSMITH,D.DUROCHER, JRNL AUTH 4 F.SICHERI JRNL TITL ATOMIC STRUCTURE OF THE KEOPS COMPLEX: AN ANCIENT PROTEIN JRNL TITL 2 KINASE-CONTAINING MOLECULAR MACHINE. JRNL REF MOL.CELL V. 32 259 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18951093 JRNL DOI 10.1016/J.MOLCEL.2008.10.002 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1039 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.71000 REMARK 3 B22 (A**2) : 1.71000 REMARK 3 B33 (A**2) : -2.56000 REMARK 3 B12 (A**2) : 0.85000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.434 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2667 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3557 ; 1.676 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 5.965 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;42.232 ;26.214 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;21.696 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.560 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1824 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1712 ; 0.625 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2722 ; 1.084 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 955 ; 1.882 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 835 ; 2.989 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5970 24.8160 39.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: -0.0920 REMARK 3 T33: 0.1415 T12: 0.0020 REMARK 3 T13: -0.1006 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.9675 L22: 5.1953 REMARK 3 L33: 5.7354 L12: -0.7866 REMARK 3 L13: 2.2829 L23: 0.8621 REMARK 3 S TENSOR REMARK 3 S11: 0.2335 S12: 0.3942 S13: -0.3573 REMARK 3 S21: -0.6942 S22: -0.2164 S23: 0.6702 REMARK 3 S31: 0.2435 S32: -0.2917 S33: -0.0172 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 175 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2720 22.1210 69.5070 REMARK 3 T TENSOR REMARK 3 T11: -0.0232 T22: -0.1235 REMARK 3 T33: -0.1013 T12: 0.0116 REMARK 3 T13: 0.0948 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: 3.4258 L22: 2.3117 REMARK 3 L33: 4.6902 L12: 0.0292 REMARK 3 L13: 1.8502 L23: 0.3370 REMARK 3 S TENSOR REMARK 3 S11: 0.0883 S12: -0.3255 S13: -0.2829 REMARK 3 S21: 0.3422 S22: 0.0004 S23: 0.2177 REMARK 3 S31: 0.6269 S32: -0.0022 S33: -0.0887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ENP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13866 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 31.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.620 REMARK 200 R MERGE (I) : 0.04940 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 1500, 0.2 M CAOAC, 0.1 M REMARK 280 IMIDAZOLE, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.10333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.05167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.10333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.05167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 113 REMARK 465 GLU A 114 REMARK 465 LYS A 115 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 173 REMARK 465 VAL B 174 REMARK 465 LEU B 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 HIS A 129 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLN B 154 CG CD OE1 NE2 REMARK 470 GLU B 155 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MSE A 34 N GLU A 35 1.47 REMARK 500 O MSE A 1 N GLN A 2 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 70 C LYS A 71 N 0.154 REMARK 500 HIS A 129 N HIS A 129 CA 0.222 REMARK 500 GLU A 156 CD GLU A 156 OE1 0.100 REMARK 500 SER A 157 CB SER A 157 OG 0.153 REMARK 500 GLU B 120 CB GLU B 120 CG 0.151 REMARK 500 GLU B 120 CG GLU B 120 CD 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 1 O - C - N ANGL. DEV. = -32.2 DEGREES REMARK 500 GLN A 2 C - N - CA ANGL. DEV. = 19.4 DEGREES REMARK 500 MSE A 34 CA - C - N ANGL. DEV. = 29.7 DEGREES REMARK 500 MSE A 34 O - C - N ANGL. DEV. = -49.5 DEGREES REMARK 500 GLU A 35 C - N - CA ANGL. DEV. = 16.5 DEGREES REMARK 500 LYS A 69 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 LYS A 71 C - N - CA ANGL. DEV. = -16.5 DEGREES REMARK 500 MSE A 140 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 MSE A 169 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 ALA B 33 O - C - N ANGL. DEV. = -19.0 DEGREES REMARK 500 MSE B 34 CA - C - N ANGL. DEV. = 30.4 DEGREES REMARK 500 MSE B 34 O - C - N ANGL. DEV. = -29.5 DEGREES REMARK 500 GLU B 35 C - N - CA ANGL. DEV. = 18.4 DEGREES REMARK 500 LYS B 71 C - N - CA ANGL. DEV. = -21.9 DEGREES REMARK 500 ILE B 139 O - C - N ANGL. DEV. = -24.4 DEGREES REMARK 500 MSE B 140 C - N - CA ANGL. DEV. = 25.9 DEGREES REMARK 500 MSE B 140 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 34 -108.91 -38.20 REMARK 500 GLU A 35 -43.15 25.87 REMARK 500 GLN A 119 -76.76 145.65 REMARK 500 ASN A 141 94.50 -50.25 REMARK 500 LYS A 150 74.43 53.54 REMARK 500 ASP A 173 86.11 42.63 REMARK 500 GLN B 154 103.14 -38.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE A 34 GLU A 35 136.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MSE A 1 -35.88 REMARK 500 MSE A 34 53.57 REMARK 500 GLY A 128 11.30 REMARK 500 MSE A 140 19.40 REMARK 500 ARG A 168 -17.29 REMARK 500 MSE A 169 22.93 REMARK 500 ALA B 33 -29.23 REMARK 500 LYS B 69 -14.42 REMARK 500 MSE B 70 10.90 REMARK 500 ILE B 139 -26.80 REMARK 500 MSE B 140 -17.75 REMARK 500 ARG B 168 -13.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EN9 RELATED DB: PDB REMARK 900 KEOPS REMARK 900 RELATED ID: 3ENC RELATED DB: PDB REMARK 900 KEOPS REMARK 900 RELATED ID: 3ENH RELATED DB: PDB REMARK 900 KEOPS DBREF 3ENP A 1 175 UNP Q9Y3C4 TPRKB_HUMAN 1 175 DBREF 3ENP B 1 175 UNP Q9Y3C4 TPRKB_HUMAN 1 175 SEQADV 3ENP GLY A -1 UNP Q9Y3C4 EXPRESSION TAG SEQADV 3ENP ALA A 0 UNP Q9Y3C4 EXPRESSION TAG SEQADV 3ENP GLY B -1 UNP Q9Y3C4 EXPRESSION TAG SEQADV 3ENP ALA B 0 UNP Q9Y3C4 EXPRESSION TAG SEQRES 1 A 177 GLY ALA MSE GLN LEU THR HIS GLN LEU ASP LEU PHE PRO SEQRES 2 A 177 GLU CYS ARG VAL THR LEU LEU LEU PHE LYS ASP VAL LYS SEQRES 3 A 177 ASN ALA GLY ASP LEU ARG ARG LYS ALA MSE GLU GLY THR SEQRES 4 A 177 ILE ASP GLY SER LEU ILE ASN PRO THR VAL ILE VAL ASP SEQRES 5 A 177 PRO PHE GLN ILE LEU VAL ALA ALA ASN LYS ALA VAL HIS SEQRES 6 A 177 LEU TYR LYS LEU GLY LYS MSE LYS THR ARG THR LEU SER SEQRES 7 A 177 THR GLU ILE ILE PHE ASN LEU SER PRO ASN ASN ASN ILE SEQRES 8 A 177 SER GLU ALA LEU LYS LYS PHE GLY ILE SER ALA ASN ASP SEQRES 9 A 177 THR SER ILE LEU ILE VAL TYR ILE GLU GLU GLY GLU LYS SEQRES 10 A 177 GLN ILE ASN GLN GLU TYR LEU ILE SER GLN VAL GLU GLY SEQRES 11 A 177 HIS GLN VAL SER LEU LYS ASN LEU PRO GLU ILE MSE ASN SEQRES 12 A 177 ILE THR GLU VAL LYS LYS ILE TYR LYS LEU SER SER GLN SEQRES 13 A 177 GLU GLU SER ILE GLY THR LEU LEU ASP ALA ILE ILE CYS SEQRES 14 A 177 ARG MSE SER THR LYS ASP VAL LEU SEQRES 1 B 177 GLY ALA MSE GLN LEU THR HIS GLN LEU ASP LEU PHE PRO SEQRES 2 B 177 GLU CYS ARG VAL THR LEU LEU LEU PHE LYS ASP VAL LYS SEQRES 3 B 177 ASN ALA GLY ASP LEU ARG ARG LYS ALA MSE GLU GLY THR SEQRES 4 B 177 ILE ASP GLY SER LEU ILE ASN PRO THR VAL ILE VAL ASP SEQRES 5 B 177 PRO PHE GLN ILE LEU VAL ALA ALA ASN LYS ALA VAL HIS SEQRES 6 B 177 LEU TYR LYS LEU GLY LYS MSE LYS THR ARG THR LEU SER SEQRES 7 B 177 THR GLU ILE ILE PHE ASN LEU SER PRO ASN ASN ASN ILE SEQRES 8 B 177 SER GLU ALA LEU LYS LYS PHE GLY ILE SER ALA ASN ASP SEQRES 9 B 177 THR SER ILE LEU ILE VAL TYR ILE GLU GLU GLY GLU LYS SEQRES 10 B 177 GLN ILE ASN GLN GLU TYR LEU ILE SER GLN VAL GLU GLY SEQRES 11 B 177 HIS GLN VAL SER LEU LYS ASN LEU PRO GLU ILE MSE ASN SEQRES 12 B 177 ILE THR GLU VAL LYS LYS ILE TYR LYS LEU SER SER GLN SEQRES 13 B 177 GLU GLU SER ILE GLY THR LEU LEU ASP ALA ILE ILE CYS SEQRES 14 B 177 ARG MSE SER THR LYS ASP VAL LEU MODRES 3ENP MSE A 1 MET SELENOMETHIONINE MODRES 3ENP MSE A 34 MET SELENOMETHIONINE MODRES 3ENP MSE A 70 MET SELENOMETHIONINE MODRES 3ENP MSE A 140 MET SELENOMETHIONINE MODRES 3ENP MSE A 169 MET SELENOMETHIONINE MODRES 3ENP MSE B 1 MET SELENOMETHIONINE MODRES 3ENP MSE B 34 MET SELENOMETHIONINE MODRES 3ENP MSE B 70 MET SELENOMETHIONINE MODRES 3ENP MSE B 140 MET SELENOMETHIONINE MODRES 3ENP MSE B 169 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 34 8 HET MSE A 70 8 HET MSE A 140 8 HET MSE A 169 8 HET MSE B 1 8 HET MSE B 34 8 HET MSE B 70 8 HET MSE B 140 8 HET MSE B 169 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *18(H2 O) HELIX 1 1 ASN A 25 GLY A 36 1 12 HELIX 2 2 ASN A 44 ILE A 48 5 5 HELIX 3 3 ASP A 50 LYS A 66 1 17 HELIX 4 4 THR A 74 SER A 84 1 11 HELIX 5 5 ASN A 88 GLY A 97 1 10 HELIX 6 6 GLN A 119 SER A 124 1 6 HELIX 7 7 SER A 132 ILE A 139 5 8 HELIX 8 8 ASN A 141 LYS A 150 1 10 HELIX 9 9 SER A 157 LYS A 172 1 16 HELIX 10 10 ASN B 25 GLU B 35 1 11 HELIX 11 11 ASN B 44 ILE B 48 5 5 HELIX 12 12 ASP B 50 GLY B 68 1 19 HELIX 13 13 THR B 74 LEU B 83 1 10 HELIX 14 14 ASN B 88 GLY B 97 1 10 HELIX 15 15 ASN B 118 GLN B 125 1 8 HELIX 16 16 SER B 132 LYS B 134 5 3 HELIX 17 17 ASN B 135 MSE B 140 1 6 HELIX 18 18 ASN B 141 TYR B 149 1 9 HELIX 19 19 SER B 157 LYS B 172 1 16 SHEET 1 A 4 LEU A 3 GLN A 6 0 SHEET 2 A 4 ARG A 14 LYS A 21 -1 O LEU A 17 N LEU A 3 SHEET 3 A 4 SER A 104 GLU A 111 -1 O ILE A 107 N LEU A 18 SHEET 4 A 4 SER A 41 ILE A 43 -1 N ILE A 43 O LEU A 106 SHEET 1 B 3 LEU A 3 GLN A 6 0 SHEET 2 B 3 ARG A 14 LYS A 21 -1 O LEU A 17 N LEU A 3 SHEET 3 B 3 HIS A 129 VAL A 131 -1 O HIS A 129 N LYS A 21 SHEET 1 C 4 LEU B 3 GLN B 6 0 SHEET 2 C 4 ARG B 14 LYS B 21 -1 O VAL B 15 N HIS B 5 SHEET 3 C 4 ILE B 105 GLU B 111 -1 O ILE B 107 N LEU B 18 SHEET 4 C 4 SER B 41 ILE B 43 -1 N ILE B 43 O LEU B 106 SHEET 1 D 3 LEU B 3 GLN B 6 0 SHEET 2 D 3 ARG B 14 LYS B 21 -1 O VAL B 15 N HIS B 5 SHEET 3 D 3 HIS B 129 VAL B 131 -1 O HIS B 129 N LYS B 21 SSBOND 1 CYS A 167 CYS B 167 1555 1555 2.03 LINK C MSE A 1 N GLN A 2 1555 1555 1.28 LINK C ALA A 33 N MSE A 34 1555 1555 1.28 LINK C MSE A 34 N GLU A 35 1555 1555 1.25 LINK C LYS A 69 N MSE A 70 1555 1555 1.41 LINK C MSE A 70 N LYS A 71 1555 1555 1.49 LINK C ILE A 139 N MSE A 140 1555 1555 1.43 LINK C MSE A 140 N ASN A 141 1555 1555 1.42 LINK C ARG A 168 N MSE A 169 1555 1555 1.40 LINK C MSE A 169 N SER A 170 1555 1555 1.42 LINK C MSE B 1 N GLN B 2 1555 1555 1.42 LINK C ALA B 33 N MSE B 34 1555 1555 1.41 LINK C MSE B 34 N GLU B 35 1555 1555 1.44 LINK C LYS B 69 N MSE B 70 1555 1555 1.40 LINK C MSE B 70 N LYS B 71 1555 1555 1.43 LINK C ILE B 139 N MSE B 140 1555 1555 1.42 LINK C MSE B 140 N ASN B 141 1555 1555 1.39 LINK C ARG B 168 N MSE B 169 1555 1555 1.40 LINK C MSE B 169 N SER B 170 1555 1555 1.40 CISPEP 1 ASN A 118 GLN A 119 0 -15.26 CISPEP 2 VAL A 174 LEU A 175 0 21.84 CRYST1 93.521 93.521 87.155 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010693 0.006173 0.000000 0.00000 SCALE2 0.000000 0.012347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011474 0.00000 HETATM 1 N MSE A 1 2.691 20.651 36.482 1.00 70.20 N HETATM 2 CA MSE A 1 2.724 21.296 37.842 1.00 70.46 C HETATM 3 C MSE A 1 4.096 21.823 38.275 1.00 69.32 C HETATM 4 O MSE A 1 5.097 21.100 38.305 1.00 70.21 O HETATM 5 CB MSE A 1 2.157 20.354 38.921 1.00 70.75 C HETATM 6 CG MSE A 1 0.724 20.679 39.319 1.00 73.45 C HETATM 7 SE MSE A 1 0.496 22.575 39.802 1.00 80.37 SE HETATM 8 CE MSE A 1 -1.344 22.851 39.137 1.00 77.02 C