HEADER FLAVOPROTEIN 26-SEP-08 3EO7 TITLE CRYSTAL STRUCTURE OF A PUTATIVE NITROREDUCTASE (AVA_2154) FROM TITLE 2 ANABAENA VARIABILIS ATCC 29413 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NITROREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA VARIABILIS ATCC 29413; SOURCE 3 ORGANISM_TAXID: 240292; SOURCE 4 ATCC: 29413; SOURCE 5 GENE: YP_322669.1, AVA_2154; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3EO7 1 REMARK SEQADV LINK REVDAT 6 24-JUL-19 3EO7 1 REMARK LINK REVDAT 5 25-OCT-17 3EO7 1 REMARK REVDAT 4 13-JUL-11 3EO7 1 VERSN REVDAT 3 23-MAR-11 3EO7 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3EO7 1 VERSN REVDAT 1 28-OCT-08 3EO7 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE NITROREDUCTASE (YP_322669.1) JRNL TITL 2 FROM ANABAENA VARIABILIS ATCC 29413 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 68745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3480 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3899 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 508 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4257 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2794 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5817 ; 1.579 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6788 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 523 ; 4.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;32.469 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 657 ;11.147 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.228 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4885 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 898 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 837 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3100 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2121 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2145 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 412 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.192 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 73 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2667 ; 2.003 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1020 ; 0.474 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4148 ; 2.860 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 4.239 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1669 ; 5.846 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 510 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3795 32.4261 2.3802 REMARK 3 T TENSOR REMARK 3 T11: -0.0401 T22: -0.0294 REMARK 3 T33: -0.0528 T12: -0.0162 REMARK 3 T13: -0.0062 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.5727 L22: 0.5441 REMARK 3 L33: 0.4842 L12: 0.2280 REMARK 3 L13: -0.0518 L23: -0.1309 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0381 S13: 0.0265 REMARK 3 S21: -0.0085 S22: 0.0046 S23: 0.0192 REMARK 3 S31: -0.0117 S32: -0.0489 S33: -0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 (3). ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 (4). THE DENSITIES OF RESIDUES 27-28, 59-63 AND 286-297 WERE REMARK 3 POOR AND THEY WERE NOT MODELED. REMARK 3 (5). THE DENSITIES OF RESIDUES 55-58 WERE POOR AND THEIR MODELS REMARK 3 ARE NOT RELIABLE. REMARK 3 (6). ONE FMN MONOMER WAS MODELED BASED ON THE PRESENCE OF CLEAR REMARK 3 AND CONCLUSIVE ELECTRON DENSITY. REMARK 3 (7). CA ION, CL IONS, ACETATE (ACT) IONS AND REMARK 3 THE R-FORM (PGR) OF 1,2-PROPANE DIOL MOLECULES REMARK 3 WERE MODELED BASED ON CRYSTALLIZATION CONDITION. REMARK 4 REMARK 4 3EO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918370,0.978985,0.979346 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68777 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.056 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40.0000% 1,2-PROPANEDIOL, 0.0500M REMARK 280 CA(OAC)2, 0.1M ACETATE PH 4.5, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.31667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.63333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.63333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.31667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 465 SER A 27 REMARK 465 GLN A 28 REMARK 465 GLU A 59 REMARK 465 VAL A 60 REMARK 465 PHE A 61 REMARK 465 VAL A 62 REMARK 465 ASN A 63 REMARK 465 LYS A 286 REMARK 465 LEU A 287 REMARK 465 ASN A 288 REMARK 465 LEU A 289 REMARK 465 PRO A 290 REMARK 465 THR A 291 REMARK 465 VAL A 292 REMARK 465 ILE A 293 REMARK 465 GLN A 294 REMARK 465 GLU A 295 REMARK 465 LYS A 296 REMARK 465 SER A 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CD OE1 OE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 321 CD OE1 OE2 REMARK 470 LYS A 441 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 38 45.52 -86.07 REMARK 500 GLN A 55 -134.39 -144.40 REMARK 500 GLU A 56 -118.36 -129.74 REMARK 500 TYR A 81 24.44 -147.96 REMARK 500 SER A 89 119.63 -162.17 REMARK 500 MSE A 90 65.48 37.16 REMARK 500 GLU A 177 -134.73 50.77 REMARK 500 ASN A 260 43.43 -100.44 REMARK 500 ASN A 260 62.32 -101.44 REMARK 500 THR A 284 -96.98 -105.60 REMARK 500 PHE A 304 57.74 38.85 REMARK 500 SER A 370 74.71 -151.17 REMARK 500 ASP A 375 91.81 -164.89 REMARK 500 CYS A 421 34.53 -85.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FMN A 700 O2 REMARK 620 2 HOH A 879 O 129.2 REMARK 620 3 HOH A1095 O 79.7 77.0 REMARK 620 4 HOH A1207 O 82.9 142.2 92.8 REMARK 620 5 HOH A1223 O 154.9 71.2 93.6 73.3 REMARK 620 6 HOH A1225 O 108.4 95.9 171.7 90.2 79.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR A 717 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390460 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EO7 A 1 510 UNP Q3MB62 Q3MB62_ANAVT 1 510 SEQADV 3EO7 GLY A 0 UNP Q3MB62 EXPRESSION TAG SEQRES 1 A 511 GLY MSE PRO GLU ILE HIS GLN SER ILE ALA GLN HIS TYR SEQRES 2 A 511 HIS GLU ARG THR LYS TYR ASP PRO GLU THR ILE ALA SER SEQRES 3 A 511 LYS SER GLN ARG LEU ASP TRP ALA LYS GLN PRO VAL PRO SEQRES 4 A 511 PHE LYS GLU TYR LYS ILE GLY SER ALA ILE ASP LEU LYS SEQRES 5 A 511 PRO TYR LEU GLN GLU THR PRO GLU VAL PHE VAL ASN ASP SEQRES 6 A 511 THR ASN GLY GLN TRP TRP GLN ARG LEU SER ARG LEU LEU SEQRES 7 A 511 PHE ARG SER TYR GLY LEU THR ALA ARG MSE PRO SER MSE SEQRES 8 A 511 GLY ASN THR VAL TYR LEU ARG ALA ALA PRO SER ALA GLY SEQRES 9 A 511 GLY LEU TYR PRO ALA GLU VAL TYR VAL VAL SER ARG GLY SEQRES 10 A 511 THR PRO LEU LEU SER PRO GLY LEU TYR ASN TYR GLN CYS SEQRES 11 A 511 ARG THR HIS SER LEU ILE HIS TYR TRP GLU SER ASP VAL SEQRES 12 A 511 TRP GLN SER LEU GLN GLU ALA CYS PHE TRP HIS PRO ALA SEQRES 13 A 511 LEU GLU SER THR GLN LEU ALA ILE ILE VAL THR ALA VAL SEQRES 14 A 511 PHE TYR ARG SER ALA TRP ARG TYR GLU ASP ARG ALA TYR SEQRES 15 A 511 ARG ARG ILE CYS LEU ASP THR GLY HIS LEU LEU GLY ASN SEQRES 16 A 511 ILE GLU LEU SER ALA ALA ILE THR ASP TYR ARG PRO HIS SEQRES 17 A 511 LEU ILE GLY GLY PHE ILE ASP GLU ALA VAL ASN ASP LEU SEQRES 18 A 511 LEU TYR ILE ASP PRO LEU GLN GLU GLY ALA ILE ALA VAL SEQRES 19 A 511 LEU PRO LEU ALA ASP LEU LEU ASP ILE GLN GLN ASN ILE SEQRES 20 A 511 SER PRO GLY CYS THR ALA LEU PRO SER ALA THR GLU THR SEQRES 21 A 511 ASN TYR PRO GLN VAL PRO ASP GLY GLU LEU LEU LYS TYR SEQRES 22 A 511 PHE HIS HIS HIS THR GLN ILE SER ALA SER ILE THR GLY SEQRES 23 A 511 LYS LEU ASN LEU PRO THR VAL ILE GLN GLU LYS SER LEU SEQRES 24 A 511 GLU ASP LYS TYR ASN PHE PRO PHE CYS LEU LYS ILE SER SEQRES 25 A 511 THR VAL SER ALA PRO ILE TYR TRP GLY GLU ASN LEU SER SEQRES 26 A 511 ASP LEU GLU ILE THR MSE HIS LYS ARG ARG SER THR ARG SEQRES 27 A 511 ALA TYR ASN GLY GLU GLU LEU THR PHE ASP GLU LEU LYS SEQRES 28 A 511 ALA LEU LEU ASP PHE THR TYR GLN PRO GLN ASN TYR ILE SEQRES 29 A 511 ASP GLN SER LEU ASP ASN SER PRO ASP TYR PHE ASP LEU SEQRES 30 A 511 ASN LEU ILE GLU THR PHE ILE ALA VAL CYS GLY VAL GLN SEQRES 31 A 511 GLY LEU GLU ALA GLY CYS TYR TYR TYR ALA PRO LYS ALA SEQRES 32 A 511 GLN GLU LEU ARG GLN ILE ARG PHE LYS ASN PHE ARG ARG SEQRES 33 A 511 GLU LEU HIS PHE LEU CYS LEU GLY GLN GLU LEU GLY ARG SEQRES 34 A 511 ASP ALA ALA ALA VAL ILE PHE HIS THR SER ASP LEU LYS SEQRES 35 A 511 SER ALA ILE ALA GLN TYR GLY ASP ARG VAL TYR ARG TYR SEQRES 36 A 511 LEU HIS MSE ASP ALA GLY HIS LEU GLY GLN ARG LEU ASN SEQRES 37 A 511 LEU ALA ALA ILE GLN LEU ASN LEU GLY VAL SER GLY ILE SEQRES 38 A 511 GLY GLY PHE PHE ASP ASP GLN VAL ASN GLU VAL LEU GLY SEQRES 39 A 511 ILE PRO ASN ASP GLU ALA VAL ILE TYR ILE THR THR LEU SEQRES 40 A 511 GLY ARG PRO ARG MODRES 3EO7 MSE A 87 MET SELENOMETHIONINE MODRES 3EO7 MSE A 90 MET SELENOMETHIONINE MODRES 3EO7 MSE A 330 MET SELENOMETHIONINE MODRES 3EO7 MSE A 457 MET SELENOMETHIONINE HET MSE A 87 16 HET MSE A 90 8 HET MSE A 330 8 HET MSE A 457 8 HET FMN A 700 31 HET CA A 701 1 HET CL A 702 1 HET CL A 703 2 HET ACT A 704 4 HET ACT A 705 4 HET ACT A 706 4 HET ACT A 707 4 HET ACT A 708 4 HET ACT A 709 4 HET ACT A 710 4 HET ACT A 711 4 HET ACT A 712 4 HET ACT A 713 4 HET ACT A 714 4 HET ACT A 715 4 HET PGR A 716 5 HET PGR A 717 5 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM PGR R-1,2-PROPANEDIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 CA CA 2+ FORMUL 4 CL 2(CL 1-) FORMUL 6 ACT 12(C2 H3 O2 1-) FORMUL 18 PGR 2(C3 H8 O2) FORMUL 20 HOH *508(H2 O) HELIX 1 1 SER A 7 THR A 16 1 10 HELIX 2 2 ASP A 31 GLN A 35 5 5 HELIX 3 3 LYS A 51 LEU A 54 5 4 HELIX 4 4 ASP A 64 GLY A 82 1 19 HELIX 5 5 SER A 101 LEU A 105 5 5 HELIX 6 6 VAL A 142 CYS A 150 1 9 HELIX 7 7 HIS A 153 THR A 159 1 7 HELIX 8 8 PHE A 169 GLU A 177 1 9 HELIX 9 9 ARG A 179 THR A 202 1 24 HELIX 10 10 ILE A 213 TYR A 222 1 10 HELIX 11 11 ASP A 241 ASN A 245 5 5 HELIX 12 12 GLU A 268 HIS A 276 1 9 HELIX 13 13 GLY A 320 ASN A 322 5 3 HELIX 14 14 LEU A 323 ARG A 333 1 11 HELIX 15 15 PHE A 346 GLN A 358 1 13 HELIX 16 16 PRO A 359 SER A 366 5 8 HELIX 17 17 ASP A 375 ILE A 379 5 5 HELIX 18 18 PHE A 413 CYS A 421 1 9 HELIX 19 19 GLN A 424 ALA A 430 1 7 HELIX 20 20 ASP A 439 GLY A 448 1 10 HELIX 21 21 ARG A 450 LEU A 473 1 24 HELIX 22 22 PHE A 484 GLY A 493 1 10 SHEET 1 A 7 SER A 46 ASP A 49 0 SHEET 2 A 7 SER A 133 TRP A 138 -1 O LEU A 134 N ILE A 48 SHEET 3 A 7 GLY A 123 GLN A 128 -1 N GLN A 128 O SER A 133 SHEET 4 A 7 ALA A 108 SER A 114 -1 N VAL A 110 O TYR A 127 SHEET 5 A 7 LEU A 161 VAL A 168 -1 O ALA A 162 N VAL A 113 SHEET 6 A 7 GLU A 228 ASP A 238 -1 O LEU A 234 N ILE A 163 SHEET 7 A 7 TYR A 204 PRO A 206 -1 N ARG A 205 O ALA A 237 SHEET 1 B 2 LEU A 83 SER A 89 0 SHEET 2 B 2 ASN A 92 ARG A 97 -1 O ASN A 92 N SER A 89 SHEET 1 C 7 LYS A 309 SER A 311 0 SHEET 2 C 7 GLU A 404 PHE A 410 -1 O LEU A 405 N ILE A 310 SHEET 3 C 7 GLY A 394 ALA A 399 -1 N ALA A 399 O GLU A 404 SHEET 4 C 7 GLU A 380 VAL A 385 -1 N ILE A 383 O TYR A 396 SHEET 5 C 7 ALA A 432 SER A 438 -1 O PHE A 435 N PHE A 382 SHEET 6 C 7 ALA A 499 GLY A 507 -1 O ILE A 501 N HIS A 436 SHEET 7 C 7 GLY A 476 ILE A 480 -1 N GLY A 476 O GLY A 507 SHEET 1 D 2 LEU A 344 THR A 345 0 SHEET 2 D 2 VAL A 388 GLN A 389 1 O GLN A 389 N LEU A 344 LINK C ARG A 86 N AMSE A 87 1555 1555 1.34 LINK C ARG A 86 N BMSE A 87 1555 1555 1.33 LINK C AMSE A 87 N PRO A 88 1555 1555 1.36 LINK C BMSE A 87 N PRO A 88 1555 1555 1.33 LINK C SER A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N GLY A 91 1555 1555 1.32 LINK C THR A 329 N MSE A 330 1555 1555 1.33 LINK C MSE A 330 N HIS A 331 1555 1555 1.33 LINK C HIS A 456 N MSE A 457 1555 1555 1.34 LINK C MSE A 457 N ASP A 458 1555 1555 1.33 LINK O2 FMN A 700 CA CA A 701 1555 1555 2.47 LINK CA CA A 701 O HOH A 879 1555 1555 2.54 LINK CA CA A 701 O HOH A1095 1555 1555 2.52 LINK CA CA A 701 O HOH A1207 1555 1555 2.31 LINK CA CA A 701 O HOH A1223 1555 1555 2.41 LINK CA CA A 701 O HOH A1225 1555 1555 2.11 CISPEP 1 THR A 57 PRO A 58 0 -2.51 SITE 1 AC1 24 ARG A 97 PRO A 100 SER A 101 ALA A 102 SITE 2 AC1 24 TYR A 106 LEU A 186 ASP A 187 HIS A 190 SITE 3 AC1 24 ARG A 333 ARG A 334 SER A 335 GLN A 424 SITE 4 AC1 24 LEU A 426 SER A 478 GLY A 479 ILE A 480 SITE 5 AC1 24 GLY A 481 CA A 701 HOH A 757 HOH A 816 SITE 6 AC1 24 HOH A1091 HOH A1092 HOH A1094 HOH A1225 SITE 1 AC2 6 FMN A 700 HOH A 879 HOH A1095 HOH A1207 SITE 2 AC2 6 HOH A1223 HOH A1225 SITE 1 AC3 4 LYS A 271 PHE A 304 PRO A 305 PHE A 306 SITE 1 AC4 4 TRP A 138 GLU A 139 ACT A 711 HOH A1128 SITE 1 AC5 4 ILE A 48 TYR A 53 TRP A 70 HOH A1030 SITE 1 AC6 5 LYS A 34 GLN A 227 PHE A 306 HOH A 958 SITE 2 AC6 5 HOH A1036 SITE 1 AC7 5 SER A 255 ALA A 256 THR A 257 ALA A 445 SITE 2 AC7 5 GLY A 448 SITE 1 AC8 6 ASP A 203 ASN A 322 LEU A 323 SER A 366 SITE 2 AC8 6 HOH A1124 HOH A1125 SITE 1 AC9 6 GLU A 41 TYR A 42 GLN A 128 ILE A 135 SITE 2 AC9 6 ACT A 710 HOH A 983 SITE 1 BC1 3 GLU A 343 GLN A 389 HOH A 933 SITE 1 BC2 6 TYR A 42 LYS A 43 ILE A 44 GLY A 45 SITE 2 BC2 6 ILE A 135 ACT A 708 SITE 1 BC3 4 HIS A 136 GLU A 139 CL A 703 HOH A1128 SITE 1 BC4 3 ASP A 219 GLU A 490 HOH A1154 SITE 1 BC5 6 GLY A 390 LEU A 391 GLU A 392 TYR A 396 SITE 2 BC5 6 HOH A1115 HOH A1187 SITE 1 BC6 5 ASP A 224 LEU A 226 ARG A 409 GLY A 493 SITE 2 BC6 5 HOH A1003 SITE 1 BC7 4 GLU A 215 ASN A 218 PRO A 225 HOH A 858 SITE 1 BC8 6 ASP A 486 ASN A 489 GLU A 490 ASN A 496 SITE 2 BC8 6 GLU A 498 HOH A1166 SITE 1 BC9 8 LYS A 271 TYR A 272 HIS A 275 HIS A 276 SITE 2 BC9 8 CYS A 307 LEU A 308 GLN A 407 ILE A 408 CRYST1 93.880 93.880 144.950 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010652 0.006150 0.000000 0.00000 SCALE2 0.000000 0.012300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006899 0.00000