data_3EPI # _entry.id 3EPI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EPI pdb_00003epi 10.2210/pdb3epi/pdb NDB PD1190 ? ? RCSB RCSB049613 ? ? WWPDB D_1000049613 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ALZ 'Structure of DNA pol iota with template guanine and incoming dCTP' unspecified PDB 2FLP 'Binary structure of DNA pol iota with template guanine' unspecified PDB 3epg . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EPI _pdbx_database_status.recvd_initial_deposition_date 2008-09-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Pence, M.G.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Lesion bypass of N2-ethylguanine by human DNA polymerase iota.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 284 _citation.page_first 1732 _citation.page_last 1740 _citation.year 2009 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18984581 _citation.pdbx_database_id_DOI 10.1074/jbc.M807296200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pence, M.G.' 1 ? primary 'Blans, P.' 2 ? primary 'Zink, C.N.' 3 ? primary 'Hollis, T.' 4 ? primary 'Fishbein, J.C.' 5 ? primary 'Perrino, F.W.' 6 ? # _cell.entry_id 3EPI _cell.length_a 98.643 _cell.length_b 98.643 _cell.length_c 202.231 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EPI _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase iota' 47027.344 1 2.7.7.7 ? 'Catalytic Fragment (UNP residues 1-420)' ? 2 polymer syn "5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3'" 5520.607 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 water nat water 18.015 69 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RAD30 homolog B, Eta2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP FHLTLLSVCFCNLKALNTAK ; ;MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP FHLTLLSVCFCNLKALNTAK ; A ? 2 polydeoxyribonucleotide no yes '(DT)(DC)(DT)(2EG)(DG)(DG)(DG)(DT)(DC)(DC)(DT)(DA)(DG)(DG)(DA)(DC)(DC)(DOC)' TCTGGGGTCCTAGGACCC B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LEU n 1 4 ALA n 1 5 ASP n 1 6 VAL n 1 7 GLY n 1 8 ALA n 1 9 ALA n 1 10 ALA n 1 11 SER n 1 12 SER n 1 13 GLN n 1 14 GLY n 1 15 VAL n 1 16 HIS n 1 17 ASP n 1 18 GLN n 1 19 VAL n 1 20 LEU n 1 21 PRO n 1 22 THR n 1 23 PRO n 1 24 ASN n 1 25 ALA n 1 26 SER n 1 27 SER n 1 28 ARG n 1 29 VAL n 1 30 ILE n 1 31 VAL n 1 32 HIS n 1 33 VAL n 1 34 ASP n 1 35 LEU n 1 36 ASP n 1 37 CYS n 1 38 PHE n 1 39 TYR n 1 40 ALA n 1 41 GLN n 1 42 VAL n 1 43 GLU n 1 44 MET n 1 45 ILE n 1 46 SER n 1 47 ASN n 1 48 PRO n 1 49 GLU n 1 50 LEU n 1 51 LYS n 1 52 ASP n 1 53 LYS n 1 54 PRO n 1 55 LEU n 1 56 GLY n 1 57 VAL n 1 58 GLN n 1 59 GLN n 1 60 LYS n 1 61 TYR n 1 62 LEU n 1 63 VAL n 1 64 VAL n 1 65 THR n 1 66 CYS n 1 67 ASN n 1 68 TYR n 1 69 GLU n 1 70 ALA n 1 71 ARG n 1 72 LYS n 1 73 LEU n 1 74 GLY n 1 75 VAL n 1 76 LYS n 1 77 LYS n 1 78 LEU n 1 79 MET n 1 80 ASN n 1 81 VAL n 1 82 ARG n 1 83 ASP n 1 84 ALA n 1 85 LYS n 1 86 GLU n 1 87 LYS n 1 88 CYS n 1 89 PRO n 1 90 GLN n 1 91 LEU n 1 92 VAL n 1 93 LEU n 1 94 VAL n 1 95 ASN n 1 96 GLY n 1 97 GLU n 1 98 ASP n 1 99 LEU n 1 100 THR n 1 101 ARG n 1 102 TYR n 1 103 ARG n 1 104 GLU n 1 105 MET n 1 106 SER n 1 107 TYR n 1 108 LYS n 1 109 VAL n 1 110 THR n 1 111 GLU n 1 112 LEU n 1 113 LEU n 1 114 GLU n 1 115 GLU n 1 116 PHE n 1 117 SER n 1 118 PRO n 1 119 VAL n 1 120 VAL n 1 121 GLU n 1 122 ARG n 1 123 LEU n 1 124 GLY n 1 125 PHE n 1 126 ASP n 1 127 GLU n 1 128 ASN n 1 129 PHE n 1 130 VAL n 1 131 ASP n 1 132 LEU n 1 133 THR n 1 134 GLU n 1 135 MET n 1 136 VAL n 1 137 GLU n 1 138 LYS n 1 139 ARG n 1 140 LEU n 1 141 GLN n 1 142 GLN n 1 143 LEU n 1 144 GLN n 1 145 SER n 1 146 ASP n 1 147 GLU n 1 148 LEU n 1 149 SER n 1 150 ALA n 1 151 VAL n 1 152 THR n 1 153 VAL n 1 154 SER n 1 155 GLY n 1 156 HIS n 1 157 VAL n 1 158 TYR n 1 159 ASN n 1 160 ASN n 1 161 GLN n 1 162 SER n 1 163 ILE n 1 164 ASN n 1 165 LEU n 1 166 LEU n 1 167 ASP n 1 168 VAL n 1 169 LEU n 1 170 HIS n 1 171 ILE n 1 172 ARG n 1 173 LEU n 1 174 LEU n 1 175 VAL n 1 176 GLY n 1 177 SER n 1 178 GLN n 1 179 ILE n 1 180 ALA n 1 181 ALA n 1 182 GLU n 1 183 MET n 1 184 ARG n 1 185 GLU n 1 186 ALA n 1 187 MET n 1 188 TYR n 1 189 ASN n 1 190 GLN n 1 191 LEU n 1 192 GLY n 1 193 LEU n 1 194 THR n 1 195 GLY n 1 196 CYS n 1 197 ALA n 1 198 GLY n 1 199 VAL n 1 200 ALA n 1 201 SER n 1 202 ASN n 1 203 LYS n 1 204 LEU n 1 205 LEU n 1 206 ALA n 1 207 LYS n 1 208 LEU n 1 209 VAL n 1 210 SER n 1 211 GLY n 1 212 VAL n 1 213 PHE n 1 214 LYS n 1 215 PRO n 1 216 ASN n 1 217 GLN n 1 218 GLN n 1 219 THR n 1 220 VAL n 1 221 LEU n 1 222 LEU n 1 223 PRO n 1 224 GLU n 1 225 SER n 1 226 CYS n 1 227 GLN n 1 228 HIS n 1 229 LEU n 1 230 ILE n 1 231 HIS n 1 232 SER n 1 233 LEU n 1 234 ASN n 1 235 HIS n 1 236 ILE n 1 237 LYS n 1 238 GLU n 1 239 ILE n 1 240 PRO n 1 241 GLY n 1 242 ILE n 1 243 GLY n 1 244 TYR n 1 245 LYS n 1 246 THR n 1 247 ALA n 1 248 LYS n 1 249 CYS n 1 250 LEU n 1 251 GLU n 1 252 ALA n 1 253 LEU n 1 254 GLY n 1 255 ILE n 1 256 ASN n 1 257 SER n 1 258 VAL n 1 259 ARG n 1 260 ASP n 1 261 LEU n 1 262 GLN n 1 263 THR n 1 264 PHE n 1 265 SER n 1 266 PRO n 1 267 LYS n 1 268 ILE n 1 269 LEU n 1 270 GLU n 1 271 LYS n 1 272 GLU n 1 273 LEU n 1 274 GLY n 1 275 ILE n 1 276 SER n 1 277 VAL n 1 278 ALA n 1 279 GLN n 1 280 ARG n 1 281 ILE n 1 282 GLN n 1 283 LYS n 1 284 LEU n 1 285 SER n 1 286 PHE n 1 287 GLY n 1 288 GLU n 1 289 ASP n 1 290 ASN n 1 291 SER n 1 292 PRO n 1 293 VAL n 1 294 ILE n 1 295 LEU n 1 296 SER n 1 297 GLY n 1 298 PRO n 1 299 PRO n 1 300 GLN n 1 301 SER n 1 302 PHE n 1 303 SER n 1 304 GLU n 1 305 GLU n 1 306 ASP n 1 307 SER n 1 308 PHE n 1 309 LYS n 1 310 LYS n 1 311 CYS n 1 312 SER n 1 313 SER n 1 314 GLU n 1 315 VAL n 1 316 GLU n 1 317 ALA n 1 318 LYS n 1 319 ASN n 1 320 LYS n 1 321 ILE n 1 322 GLU n 1 323 GLU n 1 324 LEU n 1 325 LEU n 1 326 ALA n 1 327 SER n 1 328 LEU n 1 329 LEU n 1 330 ASN n 1 331 ARG n 1 332 VAL n 1 333 CYS n 1 334 GLN n 1 335 ASP n 1 336 GLY n 1 337 ARG n 1 338 LYS n 1 339 PRO n 1 340 HIS n 1 341 THR n 1 342 VAL n 1 343 ARG n 1 344 LEU n 1 345 ILE n 1 346 ILE n 1 347 ARG n 1 348 ARG n 1 349 TYR n 1 350 SER n 1 351 SER n 1 352 GLU n 1 353 LYS n 1 354 HIS n 1 355 TYR n 1 356 GLY n 1 357 ARG n 1 358 GLU n 1 359 SER n 1 360 ARG n 1 361 GLN n 1 362 CYS n 1 363 PRO n 1 364 ILE n 1 365 PRO n 1 366 SER n 1 367 HIS n 1 368 VAL n 1 369 ILE n 1 370 GLN n 1 371 LYS n 1 372 LEU n 1 373 GLY n 1 374 THR n 1 375 GLY n 1 376 ASN n 1 377 TYR n 1 378 ASP n 1 379 VAL n 1 380 MET n 1 381 THR n 1 382 PRO n 1 383 MET n 1 384 VAL n 1 385 ASP n 1 386 ILE n 1 387 LEU n 1 388 MET n 1 389 LYS n 1 390 LEU n 1 391 PHE n 1 392 ARG n 1 393 ASN n 1 394 MET n 1 395 VAL n 1 396 ASN n 1 397 VAL n 1 398 LYS n 1 399 MET n 1 400 PRO n 1 401 PHE n 1 402 HIS n 1 403 LEU n 1 404 THR n 1 405 LEU n 1 406 LEU n 1 407 SER n 1 408 VAL n 1 409 CYS n 1 410 PHE n 1 411 CYS n 1 412 ASN n 1 413 LEU n 1 414 LYS n 1 415 ALA n 1 416 LEU n 1 417 ASN n 1 418 THR n 1 419 ALA n 1 420 LYS n 2 1 DT n 2 2 DC n 2 3 DT n 2 4 2EG n 2 5 DG n 2 6 DG n 2 7 DG n 2 8 DT n 2 9 DC n 2 10 DC n 2 11 DT n 2 12 DA n 2 13 DG n 2 14 DG n 2 15 DA n 2 16 DC n 2 17 DC n 2 18 DOC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'POLI, RAD30B' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'MBP-DNA pol Iota Fusion with PreScission Protease cleavage site' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) Rosetta 2 cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMAL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;A self-annealing oligonucletoide was synthesized by Midland Certified Reagents containing N2-ethylgaunine using phosphoramidite chemistry ; # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP POLI_HUMAN Q9UNA4 1 ;MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP FHLTLLSVCFCNLKALNTAK ; 1 ? 2 PDB 3EPI 3EPI 2 TCTGGGGTCCTAGGACCC -4 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EPI A 1 ? 420 ? Q9UNA4 1 ? 420 ? 1 420 2 2 3EPI B 1 ? 18 ? 3EPI -4 ? 13 ? -4 13 3 2 3EPI C 1 ? 18 ? 3EPI 837 ? 854 ? 837 854 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2EG 'DNA linking' n ;2'-DEOXY-N-ETHYLGUANOSINE 5'-PHOSPHATE ; ? 'C12 H18 N5 O7 P' 375.274 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DOC 'DNA linking' n "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O6 P' 291.198 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3EPI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '12-15% PEG MME 5000, 0.2-0.4M Ammonium Sulfate, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K' # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG MME 5000' ? ? ? 1 2 1 'Ammonium Sulfate' ? ? ? 1 3 1 MES ? ? ? 1 4 2 'PEG MME 5000' ? ? ? 1 5 2 'Ammonium Sulfate' ? ? ? 1 6 2 MES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.pdbx_collection_date 2007-04-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni Filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3EPI _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 14.99 _reflns.d_resolution_high 2.9 _reflns.number_obs 13417 _reflns.number_all 13417 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.144 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 27.44 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.323 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.pdbx_redundancy 26.36 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3EPI _refine.ls_number_reflns_obs 12753 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.99 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 98.93 _refine.ls_R_factor_obs 0.23858 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23632 _refine.ls_R_factor_R_free 0.28203 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 663 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.904 _refine.correlation_coeff_Fo_to_Fc_free 0.852 _refine.B_iso_mean 14.723 _refine.aniso_B[1][1] 0.70 _refine.aniso_B[2][2] 0.70 _refine.aniso_B[3][3] -1.05 _refine.aniso_B[1][2] 0.35 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model '2ALZ minus DNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.427 _refine.overall_SU_ML 0.341 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 35.863 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2905 _refine_hist.pdbx_number_atoms_nucleic_acid 310 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 3290 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 14.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 3324 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.532 2.115 ? 4547 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.269 5.000 ? 373 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.523 24.844 ? 128 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.458 15.000 ? 562 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.935 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.118 0.200 ? 532 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 2333 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.225 0.200 ? 1504 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 2237 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.155 0.200 ? 130 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.020 0.200 ? 2 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.337 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.148 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.372 1.500 ? 1879 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.714 2.000 ? 3037 'X-RAY DIFFRACTION' ? r_scbond_it 0.977 3.000 ? 1522 'X-RAY DIFFRACTION' ? r_scangle_it 1.623 4.500 ? 1510 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.900 _refine_ls_shell.d_res_low 2.975 _refine_ls_shell.number_reflns_R_work 914 _refine_ls_shell.R_factor_R_work 0.316 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.395 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3EPI _struct.title 'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EPI _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text ;DNA pol iota, lesion bypass, N2-ethylguanine, DNA damage, DNA repair, DNA replication, DNA synthesis, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Nucleus, Schiff base, Transferase, TRANSFERASE-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 37 ? ASN A 47 ? CYS A 37 ASN A 47 1 ? 11 HELX_P HELX_P2 2 PRO A 48 ? LYS A 51 ? PRO A 48 LYS A 51 5 ? 4 HELX_P HELX_P3 3 ASN A 67 ? LYS A 72 ? ASN A 67 LYS A 72 1 ? 6 HELX_P HELX_P4 4 VAL A 81 ? CYS A 88 ? VAL A 81 CYS A 88 1 ? 8 HELX_P HELX_P5 5 LEU A 99 ? GLU A 115 ? LEU A 99 GLU A 115 1 ? 17 HELX_P HELX_P6 6 LEU A 132 ? LEU A 143 ? LEU A 132 LEU A 143 1 ? 12 HELX_P HELX_P7 7 ASN A 159 ? GLN A 161 ? ASN A 159 GLN A 161 5 ? 3 HELX_P HELX_P8 8 ASP A 167 ? GLY A 192 ? ASP A 167 GLY A 192 1 ? 26 HELX_P HELX_P9 9 ASN A 202 ? GLY A 211 ? ASN A 202 GLY A 211 1 ? 10 HELX_P HELX_P10 10 LEU A 222 ? GLU A 224 ? LEU A 222 GLU A 224 5 ? 3 HELX_P HELX_P11 11 SER A 225 ? LEU A 233 ? SER A 225 LEU A 233 1 ? 9 HELX_P HELX_P12 12 HIS A 235 ? ILE A 239 ? HIS A 235 ILE A 239 5 ? 5 HELX_P HELX_P13 13 GLY A 243 ? ALA A 252 ? GLY A 243 ALA A 252 1 ? 10 HELX_P HELX_P14 14 SER A 257 ? PHE A 264 ? SER A 257 PHE A 264 1 ? 8 HELX_P HELX_P15 15 SER A 265 ? GLY A 274 ? SER A 265 GLY A 274 1 ? 10 HELX_P HELX_P16 16 GLY A 274 ? PHE A 286 ? GLY A 274 PHE A 286 1 ? 13 HELX_P HELX_P17 17 ALA A 317 ? GLY A 336 ? ALA A 317 GLY A 336 1 ? 20 HELX_P HELX_P18 18 PRO A 365 ? GLN A 370 ? PRO A 365 GLN A 370 1 ? 6 HELX_P HELX_P19 19 VAL A 379 ? ASN A 396 ? VAL A 379 ASN A 396 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 17 "O3'" ? ? ? 1_555 B DOC 18 P ? ? B DC 12 B DOC 13 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale one ? C 2EG 4 "O3'" ? ? ? 1_555 C DG 5 P ? ? C 2EG 840 C DG 841 1_555 ? ? ? ? ? ? ? 1.510 ? ? metalc1 metalc ? ? A LYS 237 O ? ? ? 1_555 D NA . NA ? ? A LYS 237 A NA 421 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc2 metalc ? ? A ILE 239 O ? ? ? 1_555 D NA . NA ? ? A ILE 239 A NA 421 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc3 metalc ? ? A ILE 242 O ? ? ? 1_555 D NA . NA ? ? A ILE 242 A NA 421 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 B DC 17 OP1 ? ? A NA 421 B DC 12 1_555 ? ? ? ? ? ? ? 2.324 ? ? hydrog1 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 7 C DT 847 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog2 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 8 C DC 846 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog3 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 9 C DC 845 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 9 C DC 845 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 9 C DC 845 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 10 C DT 844 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog7 hydrog ? ? B DC 16 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 11 C DG 843 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog8 hydrog ? ? B DC 17 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 12 C DG 842 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog9 hydrog ? ? B DOC 18 N3 ? ? ? 1_555 C DG 5 N1 ? ? B DOC 13 C DG 841 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DOC 18 N4 ? ? ? 1_555 C DG 5 O6 ? ? B DOC 13 C DG 841 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DOC 18 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DOC 13 C DG 841 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 25 A . ? ALA 25 A SER 26 A ? SER 26 A 1 -1.33 2 LYS 214 A . ? LYS 214 A PRO 215 A ? PRO 215 A 1 17.69 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 120 ? LEU A 123 ? VAL A 120 LEU A 123 A 2 GLU A 127 ? ASP A 131 ? GLU A 127 ASP A 131 A 3 ILE A 30 ? LEU A 35 ? ILE A 30 LEU A 35 A 4 GLY A 195 ? ALA A 200 ? GLY A 195 ALA A 200 A 5 GLN A 218 ? VAL A 220 ? GLN A 218 VAL A 220 A 6 HIS A 156 ? VAL A 157 ? HIS A 156 VAL A 157 B 1 MET A 79 ? ASN A 80 ? MET A 79 ASN A 80 B 2 LEU A 62 ? CYS A 66 ? LEU A 62 CYS A 66 B 3 LEU A 55 ? GLN A 59 ? LEU A 55 GLN A 59 B 4 VAL A 92 ? ASN A 95 ? VAL A 92 ASN A 95 C 1 PHE A 302 ? SER A 307 ? PHE A 302 SER A 307 C 2 LEU A 405 ? LYS A 414 ? LEU A 405 LYS A 414 C 3 LYS A 338 ? ARG A 347 ? LYS A 338 ARG A 347 C 4 GLU A 358 ? PRO A 363 ? GLU A 358 PRO A 363 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 121 ? N GLU A 121 O PHE A 129 ? O PHE A 129 A 2 3 O ASN A 128 ? O ASN A 128 N VAL A 33 ? N VAL A 33 A 3 4 N ASP A 34 ? N ASP A 34 O CYS A 196 ? O CYS A 196 A 4 5 N ALA A 197 ? N ALA A 197 O THR A 219 ? O THR A 219 A 5 6 O GLN A 218 ? O GLN A 218 N HIS A 156 ? N HIS A 156 B 1 2 O MET A 79 ? O MET A 79 N VAL A 63 ? N VAL A 63 B 2 3 O THR A 65 ? O THR A 65 N VAL A 57 ? N VAL A 57 B 3 4 N GLN A 58 ? N GLN A 58 O VAL A 94 ? O VAL A 94 C 1 2 N PHE A 302 ? N PHE A 302 O PHE A 410 ? O PHE A 410 C 2 3 O SER A 407 ? O SER A 407 N ILE A 345 ? N ILE A 345 C 3 4 N ILE A 346 ? N ILE A 346 O GLU A 358 ? O GLU A 358 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 421 ? 4 'BINDING SITE FOR RESIDUE NA A 421' AC2 Software A PO4 422 ? 6 'BINDING SITE FOR RESIDUE PO4 A 422' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LYS A 237 ? LYS A 237 . ? 1_555 ? 2 AC1 4 ILE A 239 ? ILE A 239 . ? 1_555 ? 3 AC1 4 ILE A 242 ? ILE A 242 . ? 1_555 ? 4 AC1 4 DC B 17 ? DC B 12 . ? 1_555 ? 5 AC2 6 LEU A 35 ? LEU A 35 . ? 1_555 ? 6 AC2 6 ASP A 36 ? ASP A 36 . ? 1_555 ? 7 AC2 6 CYS A 37 ? CYS A 37 . ? 1_555 ? 8 AC2 6 TYR A 68 ? TYR A 68 . ? 1_555 ? 9 AC2 6 LYS A 214 ? LYS A 214 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH A 467 . ? 1_555 ? # _database_PDB_matrix.entry_id 3EPI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3EPI _atom_sites.fract_transf_matrix[1][1] 0.010138 _atom_sites.fract_transf_matrix[1][2] 0.005853 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011706 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004945 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 ASP 5 5 ? ? ? A . n A 1 6 VAL 6 6 ? ? ? A . n A 1 7 GLY 7 7 ? ? ? A . n A 1 8 ALA 8 8 ? ? ? A . n A 1 9 ALA 9 9 ? ? ? A . n A 1 10 ALA 10 10 ? ? ? A . n A 1 11 SER 11 11 ? ? ? A . n A 1 12 SER 12 12 ? ? ? A . n A 1 13 GLN 13 13 ? ? ? A . n A 1 14 GLY 14 14 ? ? ? A . n A 1 15 VAL 15 15 ? ? ? A . n A 1 16 HIS 16 16 ? ? ? A . n A 1 17 ASP 17 17 ? ? ? A . n A 1 18 GLN 18 18 ? ? ? A . n A 1 19 VAL 19 19 ? ? ? A . n A 1 20 LEU 20 20 ? ? ? A . n A 1 21 PRO 21 21 ? ? ? A . n A 1 22 THR 22 22 ? ? ? A . n A 1 23 PRO 23 23 ? ? ? A . n A 1 24 ASN 24 24 ? ? ? A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 MET 135 135 135 MET MET A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 GLN 142 142 142 GLN GLN A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 GLN 144 144 144 GLN GLN A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 HIS 156 156 156 HIS HIS A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 GLN 161 161 161 GLN GLN A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 HIS 170 170 170 HIS HIS A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 ARG 172 172 172 ARG ARG A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 GLN 178 178 178 GLN GLN A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 MET 183 183 183 MET MET A . n A 1 184 ARG 184 184 184 ARG ARG A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 MET 187 187 187 MET MET A . n A 1 188 TYR 188 188 188 TYR TYR A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 GLN 190 190 190 GLN GLN A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 CYS 196 196 196 CYS CYS A . n A 1 197 ALA 197 197 197 ALA ALA A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 PRO 215 215 215 PRO PRO A . n A 1 216 ASN 216 216 216 ASN ASN A . n A 1 217 GLN 217 217 217 GLN GLN A . n A 1 218 GLN 218 218 218 GLN GLN A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 PRO 223 223 223 PRO PRO A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 CYS 226 226 226 CYS CYS A . n A 1 227 GLN 227 227 227 GLN GLN A . n A 1 228 HIS 228 228 228 HIS HIS A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 HIS 231 231 231 HIS HIS A . n A 1 232 SER 232 232 232 SER SER A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 HIS 235 235 235 HIS HIS A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 LYS 237 237 237 LYS LYS A . n A 1 238 GLU 238 238 238 GLU GLU A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 ILE 242 242 242 ILE ILE A . n A 1 243 GLY 243 243 243 GLY GLY A . n A 1 244 TYR 244 244 244 TYR TYR A . n A 1 245 LYS 245 245 245 LYS LYS A . n A 1 246 THR 246 246 246 THR THR A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 CYS 249 249 249 CYS CYS A . n A 1 250 LEU 250 250 250 LEU LEU A . n A 1 251 GLU 251 251 251 GLU GLU A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 GLY 254 254 254 GLY GLY A . n A 1 255 ILE 255 255 255 ILE ILE A . n A 1 256 ASN 256 256 256 ASN ASN A . n A 1 257 SER 257 257 257 SER SER A . n A 1 258 VAL 258 258 258 VAL VAL A . n A 1 259 ARG 259 259 259 ARG ARG A . n A 1 260 ASP 260 260 260 ASP ASP A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 GLN 262 262 262 GLN GLN A . n A 1 263 THR 263 263 263 THR THR A . n A 1 264 PHE 264 264 264 PHE PHE A . n A 1 265 SER 265 265 265 SER SER A . n A 1 266 PRO 266 266 266 PRO PRO A . n A 1 267 LYS 267 267 267 LYS LYS A . n A 1 268 ILE 268 268 268 ILE ILE A . n A 1 269 LEU 269 269 269 LEU LEU A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 LYS 271 271 271 LYS LYS A . n A 1 272 GLU 272 272 272 GLU GLU A . n A 1 273 LEU 273 273 273 LEU LEU A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 ILE 275 275 275 ILE ILE A . n A 1 276 SER 276 276 276 SER SER A . n A 1 277 VAL 277 277 277 VAL VAL A . n A 1 278 ALA 278 278 278 ALA ALA A . n A 1 279 GLN 279 279 279 GLN GLN A . n A 1 280 ARG 280 280 280 ARG ARG A . n A 1 281 ILE 281 281 281 ILE ILE A . n A 1 282 GLN 282 282 282 GLN GLN A . n A 1 283 LYS 283 283 283 LYS LYS A . n A 1 284 LEU 284 284 284 LEU LEU A . n A 1 285 SER 285 285 285 SER SER A . n A 1 286 PHE 286 286 286 PHE PHE A . n A 1 287 GLY 287 287 287 GLY GLY A . n A 1 288 GLU 288 288 288 GLU GLU A . n A 1 289 ASP 289 289 289 ASP ASP A . n A 1 290 ASN 290 290 290 ASN ASN A . n A 1 291 SER 291 291 291 SER SER A . n A 1 292 PRO 292 292 292 PRO PRO A . n A 1 293 VAL 293 293 293 VAL VAL A . n A 1 294 ILE 294 294 294 ILE ILE A . n A 1 295 LEU 295 295 295 LEU LEU A . n A 1 296 SER 296 296 296 SER SER A . n A 1 297 GLY 297 297 297 GLY GLY A . n A 1 298 PRO 298 298 298 PRO PRO A . n A 1 299 PRO 299 299 299 PRO PRO A . n A 1 300 GLN 300 300 300 GLN GLN A . n A 1 301 SER 301 301 301 SER SER A . n A 1 302 PHE 302 302 302 PHE PHE A . n A 1 303 SER 303 303 303 SER SER A . n A 1 304 GLU 304 304 304 GLU GLU A . n A 1 305 GLU 305 305 305 GLU GLU A . n A 1 306 ASP 306 306 306 ASP ASP A . n A 1 307 SER 307 307 307 SER SER A . n A 1 308 PHE 308 308 308 PHE PHE A . n A 1 309 LYS 309 309 309 LYS LYS A . n A 1 310 LYS 310 310 310 LYS LYS A . n A 1 311 CYS 311 311 311 CYS CYS A . n A 1 312 SER 312 312 312 SER SER A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 GLU 314 314 314 GLU GLU A . n A 1 315 VAL 315 315 315 VAL VAL A . n A 1 316 GLU 316 316 316 GLU GLU A . n A 1 317 ALA 317 317 317 ALA ALA A . n A 1 318 LYS 318 318 318 LYS LYS A . n A 1 319 ASN 319 319 319 ASN ASN A . n A 1 320 LYS 320 320 320 LYS LYS A . n A 1 321 ILE 321 321 321 ILE ILE A . n A 1 322 GLU 322 322 322 GLU GLU A . n A 1 323 GLU 323 323 323 GLU GLU A . n A 1 324 LEU 324 324 324 LEU LEU A . n A 1 325 LEU 325 325 325 LEU LEU A . n A 1 326 ALA 326 326 326 ALA ALA A . n A 1 327 SER 327 327 327 SER SER A . n A 1 328 LEU 328 328 328 LEU LEU A . n A 1 329 LEU 329 329 329 LEU LEU A . n A 1 330 ASN 330 330 330 ASN ASN A . n A 1 331 ARG 331 331 331 ARG ARG A . n A 1 332 VAL 332 332 332 VAL VAL A . n A 1 333 CYS 333 333 333 CYS CYS A . n A 1 334 GLN 334 334 334 GLN GLN A . n A 1 335 ASP 335 335 335 ASP ASP A . n A 1 336 GLY 336 336 336 GLY GLY A . n A 1 337 ARG 337 337 337 ARG ARG A . n A 1 338 LYS 338 338 338 LYS LYS A . n A 1 339 PRO 339 339 339 PRO PRO A . n A 1 340 HIS 340 340 340 HIS HIS A . n A 1 341 THR 341 341 341 THR THR A . n A 1 342 VAL 342 342 342 VAL VAL A . n A 1 343 ARG 343 343 343 ARG ARG A . n A 1 344 LEU 344 344 344 LEU LEU A . n A 1 345 ILE 345 345 345 ILE ILE A . n A 1 346 ILE 346 346 346 ILE ILE A . n A 1 347 ARG 347 347 347 ARG ARG A . n A 1 348 ARG 348 348 348 ARG ARG A . n A 1 349 TYR 349 349 349 TYR TYR A . n A 1 350 SER 350 350 350 SER SER A . n A 1 351 SER 351 351 ? ? ? A . n A 1 352 GLU 352 352 ? ? ? A . n A 1 353 LYS 353 353 ? ? ? A . n A 1 354 HIS 354 354 ? ? ? A . n A 1 355 TYR 355 355 ? ? ? A . n A 1 356 GLY 356 356 356 GLY GLY A . n A 1 357 ARG 357 357 357 ARG ARG A . n A 1 358 GLU 358 358 358 GLU GLU A . n A 1 359 SER 359 359 359 SER SER A . n A 1 360 ARG 360 360 360 ARG ARG A . n A 1 361 GLN 361 361 361 GLN GLN A . n A 1 362 CYS 362 362 362 CYS CYS A . n A 1 363 PRO 363 363 363 PRO PRO A . n A 1 364 ILE 364 364 364 ILE ILE A . n A 1 365 PRO 365 365 365 PRO PRO A . n A 1 366 SER 366 366 366 SER SER A . n A 1 367 HIS 367 367 367 HIS HIS A . n A 1 368 VAL 368 368 368 VAL VAL A . n A 1 369 ILE 369 369 369 ILE ILE A . n A 1 370 GLN 370 370 370 GLN GLN A . n A 1 371 LYS 371 371 371 LYS LYS A . n A 1 372 LEU 372 372 ? ? ? A . n A 1 373 GLY 373 373 ? ? ? A . n A 1 374 THR 374 374 ? ? ? A . n A 1 375 GLY 375 375 ? ? ? A . n A 1 376 ASN 376 376 ? ? ? A . n A 1 377 TYR 377 377 ? ? ? A . n A 1 378 ASP 378 378 378 ASP ASP A . n A 1 379 VAL 379 379 379 VAL VAL A . n A 1 380 MET 380 380 380 MET MET A . n A 1 381 THR 381 381 381 THR THR A . n A 1 382 PRO 382 382 382 PRO PRO A . n A 1 383 MET 383 383 383 MET MET A . n A 1 384 VAL 384 384 384 VAL VAL A . n A 1 385 ASP 385 385 385 ASP ASP A . n A 1 386 ILE 386 386 386 ILE ILE A . n A 1 387 LEU 387 387 387 LEU LEU A . n A 1 388 MET 388 388 388 MET MET A . n A 1 389 LYS 389 389 389 LYS LYS A . n A 1 390 LEU 390 390 390 LEU LEU A . n A 1 391 PHE 391 391 391 PHE PHE A . n A 1 392 ARG 392 392 392 ARG ARG A . n A 1 393 ASN 393 393 393 ASN ASN A . n A 1 394 MET 394 394 394 MET MET A . n A 1 395 VAL 395 395 395 VAL VAL A . n A 1 396 ASN 396 396 396 ASN ASN A . n A 1 397 VAL 397 397 ? ? ? A . n A 1 398 LYS 398 398 ? ? ? A . n A 1 399 MET 399 399 ? ? ? A . n A 1 400 PRO 400 400 ? ? ? A . n A 1 401 PHE 401 401 ? ? ? A . n A 1 402 HIS 402 402 ? ? ? A . n A 1 403 LEU 403 403 403 LEU LEU A . n A 1 404 THR 404 404 404 THR THR A . n A 1 405 LEU 405 405 405 LEU LEU A . n A 1 406 LEU 406 406 406 LEU LEU A . n A 1 407 SER 407 407 407 SER SER A . n A 1 408 VAL 408 408 408 VAL VAL A . n A 1 409 CYS 409 409 409 CYS CYS A . n A 1 410 PHE 410 410 410 PHE PHE A . n A 1 411 CYS 411 411 411 CYS CYS A . n A 1 412 ASN 412 412 412 ASN ASN A . n A 1 413 LEU 413 413 413 LEU LEU A . n A 1 414 LYS 414 414 414 LYS LYS A . n A 1 415 ALA 415 415 ? ? ? A . n A 1 416 LEU 416 416 ? ? ? A . n A 1 417 ASN 417 417 ? ? ? A . n A 1 418 THR 418 418 ? ? ? A . n A 1 419 ALA 419 419 ? ? ? A . n A 1 420 LYS 420 420 ? ? ? A . n B 2 1 DT 1 -4 ? ? ? B . n B 2 2 DC 2 -3 ? ? ? B . n B 2 3 DT 3 -2 ? ? ? B . n B 2 4 2EG 4 -1 ? ? ? B . n B 2 5 DG 5 0 ? ? ? B . n B 2 6 DG 6 1 ? ? ? B . n B 2 7 DG 7 2 ? ? ? B . n B 2 8 DT 8 3 ? ? ? B . n B 2 9 DC 9 4 ? ? ? B . n B 2 10 DC 10 5 ? ? ? B . n B 2 11 DT 11 6 ? ? ? B . n B 2 12 DA 12 7 7 DA DA B . n B 2 13 DG 13 8 8 DG DG B . n B 2 14 DG 14 9 9 DG DG B . n B 2 15 DA 15 10 10 DA DA B . n B 2 16 DC 16 11 11 DC DC B . n B 2 17 DC 17 12 12 DC DC B . n B 2 18 DOC 18 13 13 DOC DOC B . n C 2 1 DT 1 837 ? ? ? C . n C 2 2 DC 2 838 ? ? ? C . n C 2 3 DT 3 839 ? ? ? C . n C 2 4 2EG 4 840 840 2EG 2EG C . n C 2 5 DG 5 841 841 DG DG C . n C 2 6 DG 6 842 842 DG DG C . n C 2 7 DG 7 843 843 DG DG C . n C 2 8 DT 8 844 844 DT DT C . n C 2 9 DC 9 845 845 DC DC C . n C 2 10 DC 10 846 846 DC DC C . n C 2 11 DT 11 847 847 DT DT C . n C 2 12 DA 12 848 ? ? ? C . n C 2 13 DG 13 849 ? ? ? C . n C 2 14 DG 14 850 ? ? ? C . n C 2 15 DA 15 851 ? ? ? C . n C 2 16 DC 16 852 ? ? ? C . n C 2 17 DC 17 853 ? ? ? C . n C 2 18 DOC 18 854 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NA 1 421 1 NA NA A . E 4 PO4 1 422 1 PO4 PO4 A . F 5 HOH 1 423 1 HOH HOH A . F 5 HOH 2 424 2 HOH HOH A . F 5 HOH 3 425 3 HOH HOH A . F 5 HOH 4 426 4 HOH HOH A . F 5 HOH 5 427 5 HOH HOH A . F 5 HOH 6 428 6 HOH HOH A . F 5 HOH 7 429 7 HOH HOH A . F 5 HOH 8 430 8 HOH HOH A . F 5 HOH 9 431 10 HOH HOH A . F 5 HOH 10 432 12 HOH HOH A . F 5 HOH 11 433 13 HOH HOH A . F 5 HOH 12 434 16 HOH HOH A . F 5 HOH 13 435 17 HOH HOH A . F 5 HOH 14 436 18 HOH HOH A . F 5 HOH 15 437 19 HOH HOH A . F 5 HOH 16 438 21 HOH HOH A . F 5 HOH 17 439 22 HOH HOH A . F 5 HOH 18 440 25 HOH HOH A . F 5 HOH 19 441 26 HOH HOH A . F 5 HOH 20 442 27 HOH HOH A . F 5 HOH 21 443 28 HOH HOH A . F 5 HOH 22 444 29 HOH HOH A . F 5 HOH 23 445 30 HOH HOH A . F 5 HOH 24 446 31 HOH HOH A . F 5 HOH 25 447 32 HOH HOH A . F 5 HOH 26 448 33 HOH HOH A . F 5 HOH 27 449 35 HOH HOH A . F 5 HOH 28 450 36 HOH HOH A . F 5 HOH 29 451 37 HOH HOH A . F 5 HOH 30 452 38 HOH HOH A . F 5 HOH 31 453 39 HOH HOH A . F 5 HOH 32 454 40 HOH HOH A . F 5 HOH 33 455 41 HOH HOH A . F 5 HOH 34 456 42 HOH HOH A . F 5 HOH 35 457 43 HOH HOH A . F 5 HOH 36 458 44 HOH HOH A . F 5 HOH 37 459 45 HOH HOH A . F 5 HOH 38 460 46 HOH HOH A . F 5 HOH 39 461 49 HOH HOH A . F 5 HOH 40 462 51 HOH HOH A . F 5 HOH 41 463 52 HOH HOH A . F 5 HOH 42 464 53 HOH HOH A . F 5 HOH 43 465 54 HOH HOH A . F 5 HOH 44 466 55 HOH HOH A . F 5 HOH 45 467 56 HOH HOH A . F 5 HOH 46 468 57 HOH HOH A . F 5 HOH 47 469 58 HOH HOH A . F 5 HOH 48 470 59 HOH HOH A . F 5 HOH 49 471 60 HOH HOH A . F 5 HOH 50 472 61 HOH HOH A . F 5 HOH 51 473 62 HOH HOH A . F 5 HOH 52 474 63 HOH HOH A . F 5 HOH 53 475 65 HOH HOH A . F 5 HOH 54 476 67 HOH HOH A . F 5 HOH 55 477 71 HOH HOH A . F 5 HOH 56 478 73 HOH HOH A . F 5 HOH 57 479 74 HOH HOH A . F 5 HOH 58 480 75 HOH HOH A . F 5 HOH 59 481 76 HOH HOH A . F 5 HOH 60 482 77 HOH HOH A . F 5 HOH 61 483 78 HOH HOH A . F 5 HOH 62 484 79 HOH HOH A . G 5 HOH 1 34 34 HOH HOH B . G 5 HOH 2 69 69 HOH HOH B . H 5 HOH 1 15 15 HOH HOH C . H 5 HOH 2 20 20 HOH HOH C . H 5 HOH 3 24 24 HOH HOH C . H 5 HOH 4 47 47 HOH HOH C . H 5 HOH 5 66 66 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B DOC 18 B DOC 13 ? DC "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" 2 C 2EG 4 C 2EG 840 ? G ;2'-DEOXY-N-ETHYLGUANOSINE 5'-PHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5000000000 0.8660254038 0.0000000000 49.3215000000 0.8660254038 -0.5000000000 0.0000000000 -85.4273439055 0.0000000000 0.0000000000 -1.0000000000 -33.7051666667 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LYS 237 ? A LYS 237 ? 1_555 NA ? D NA . ? A NA 421 ? 1_555 O ? A ILE 239 ? A ILE 239 ? 1_555 102.5 ? 2 O ? A LYS 237 ? A LYS 237 ? 1_555 NA ? D NA . ? A NA 421 ? 1_555 O ? A ILE 242 ? A ILE 242 ? 1_555 89.6 ? 3 O ? A ILE 239 ? A ILE 239 ? 1_555 NA ? D NA . ? A NA 421 ? 1_555 O ? A ILE 242 ? A ILE 242 ? 1_555 74.7 ? 4 O ? A LYS 237 ? A LYS 237 ? 1_555 NA ? D NA . ? A NA 421 ? 1_555 OP1 ? B DC 17 ? B DC 12 ? 1_555 162.5 ? 5 O ? A ILE 239 ? A ILE 239 ? 1_555 NA ? D NA . ? A NA 421 ? 1_555 OP1 ? B DC 17 ? B DC 12 ? 1_555 94.6 ? 6 O ? A ILE 242 ? A ILE 242 ? 1_555 NA ? D NA . ? A NA 421 ? 1_555 OP1 ? B DC 17 ? B DC 12 ? 1_555 91.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 4.8223 -16.8769 -19.8267 -0.0645 -0.2080 -0.1762 0.0352 0.0627 -0.0375 7.1963 3.6894 6.4688 0.1338 3.9498 1.1950 -0.2496 0.2546 0.2823 -0.4773 0.0309 0.6140 -0.5873 -0.3881 0.2187 'X-RAY DIFFRACTION' 2 ? refined -9.1420 -15.7086 -19.9735 0.1511 0.4982 0.7677 0.1003 0.0607 -0.1641 11.4432 7.4444 11.5902 -2.2610 -0.9374 0.9668 -0.2709 -0.5083 0.4815 0.8052 -0.2587 2.4454 -0.3257 -1.6798 0.5296 'X-RAY DIFFRACTION' 3 ? refined 11.5778 -23.2180 -5.2161 -0.1860 -0.2045 -0.2189 0.0225 0.0336 -0.0142 1.5788 1.5173 3.6823 -0.3413 -0.7248 -0.3446 -0.0388 -0.0406 -0.1794 0.0443 -0.0536 0.0122 0.1333 0.0153 0.0923 'X-RAY DIFFRACTION' 4 ? refined 7.4176 -42.2074 -34.1061 0.4445 0.0900 0.1093 0.1932 -0.1555 -0.1741 7.3097 6.8994 6.8052 -2.4507 0.7852 0.5372 0.5075 0.7537 -0.3824 -0.8682 -0.1566 0.4824 0.3842 -0.0107 -0.3509 'X-RAY DIFFRACTION' 5 ? refined 7.0008 -39.0524 -16.7689 0.0192 -0.0715 0.0732 0.0670 -0.0175 -0.0462 1.3108 5.0429 3.4122 -2.1089 -0.6229 -1.2654 -0.1482 0.1552 -0.6344 0.0758 -0.1969 0.3679 0.4919 0.1555 0.3451 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 25 ? ? A 63 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 64 ? ? A 90 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 91 ? ? A 306 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 307 ? ? A 414 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 C 841 ? ? C 847 ? ? ? ? 'X-RAY DIFFRACTION' 6 5 B 7 ? ? B 13 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N6 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 DA _pdbx_validate_close_contact.auth_seq_id_1 7 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O4 _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 DT _pdbx_validate_close_contact.auth_seq_id_2 847 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP2 B DA 7 ? ? 1_555 "O3'" C DT 847 ? ? 12_544 0.58 2 1 P B DA 7 ? ? 1_555 "O3'" C DT 847 ? ? 12_544 0.94 3 1 OP2 B DA 7 ? ? 1_555 "C3'" C DT 847 ? ? 12_544 1.27 4 1 OP1 B DA 7 ? ? 1_555 "O3'" C DT 847 ? ? 12_544 1.91 5 1 "O5'" B DA 7 ? ? 1_555 "O3'" C DT 847 ? ? 12_544 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DA 7 ? ? "C3'" B DA 7 ? ? 1.378 1.419 -0.041 0.006 N 2 1 N3 B DA 7 ? ? C4 B DA 7 ? ? 1.306 1.344 -0.038 0.006 N 3 1 C6 B DA 7 ? ? N1 B DA 7 ? ? 1.305 1.351 -0.046 0.007 N 4 1 "O3'" C 2EG 840 ? ? P C DG 841 ? ? 1.510 1.607 -0.097 0.012 Y 5 1 "O3'" C DC 846 ? ? P C DT 847 ? ? 1.513 1.607 -0.094 0.012 Y 6 1 N3 C DT 847 ? ? C4 C DT 847 ? ? 1.331 1.382 -0.051 0.008 N 7 1 C2 C DT 847 ? ? O2 C DT 847 ? ? 1.160 1.220 -0.060 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 7 ? ? "C1'" B DA 7 ? ? N9 B DA 7 ? ? 116.66 108.30 8.36 0.30 N 2 1 "C3'" C 2EG 840 ? ? "O3'" C 2EG 840 ? ? P C DG 841 ? ? 106.93 119.70 -12.77 1.20 Y 3 1 "C3'" C DC 846 ? ? "O3'" C DC 846 ? ? P C DT 847 ? ? 127.46 119.70 7.76 1.20 Y 4 1 "C4'" C DT 847 ? ? "C3'" C DT 847 ? ? "O3'" C DT 847 ? ? 125.44 112.30 13.14 2.00 N 5 1 N1 C DT 847 ? ? "C1'" C DT 847 ? ? "C2'" C DT 847 ? ? 124.39 114.30 10.09 1.40 N 6 1 "O4'" C DT 847 ? ? "C1'" C DT 847 ? ? N1 C DT 847 ? ? 114.30 108.30 6.00 0.30 N 7 1 C6 C DT 847 ? ? N1 C DT 847 ? ? C2 C DT 847 ? ? 117.58 121.30 -3.72 0.50 N 8 1 N1 C DT 847 ? ? C2 C DT 847 ? ? N3 C DT 847 ? ? 119.10 114.60 4.50 0.60 N 9 1 N3 C DT 847 ? ? C2 C DT 847 ? ? O2 C DT 847 ? ? 117.82 122.30 -4.48 0.60 N 10 1 N3 C DT 847 ? ? C4 C DT 847 ? ? O4 C DT 847 ? ? 123.91 119.90 4.01 0.60 N 11 1 C5 C DT 847 ? ? C4 C DT 847 ? ? O4 C DT 847 ? ? 119.04 124.90 -5.86 0.70 N 12 1 C4 C DT 847 ? ? C5 C DT 847 ? ? C7 C DT 847 ? ? 113.44 119.00 -5.56 0.60 N 13 1 C6 C DT 847 ? ? C5 C DT 847 ? ? C7 C DT 847 ? ? 128.89 122.90 5.99 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 37 ? ? 39.37 58.51 2 1 LYS A 60 ? ? 53.03 -129.35 3 1 LYS A 72 ? ? -66.22 4.36 4 1 LEU A 140 ? ? -66.42 3.52 5 1 LYS A 271 ? ? -68.14 5.96 6 1 CYS A 311 ? ? 152.96 169.42 7 1 VAL A 315 ? ? 170.59 106.67 8 1 ARG A 357 ? ? -113.80 -149.36 9 1 MET A 394 ? ? -62.25 -95.77 10 1 CYS A 411 ? ? -144.16 -155.75 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 LYS A 309 ? ? LYS A 310 ? ? -45.92 2 1 CYS A 311 ? ? SER A 312 ? ? -139.78 3 1 SER A 312 ? ? SER A 313 ? ? 106.90 4 1 SER A 313 ? ? GLU A 314 ? ? -113.10 5 1 GLU A 314 ? ? VAL A 315 ? ? 111.43 6 1 VAL A 315 ? ? GLU A 316 ? ? 65.55 7 1 GLU A 316 ? ? ALA A 317 ? ? 134.06 8 1 ARG A 347 ? ? ARG A 348 ? ? -124.51 9 1 ARG A 348 ? ? TYR A 349 ? ? -148.59 10 1 TYR A 349 ? ? SER A 350 ? ? 66.39 11 1 GLN A 370 ? ? LYS A 371 ? ? -106.00 12 1 MET A 394 ? ? VAL A 395 ? ? -129.00 13 1 VAL A 395 ? ? ASN A 396 ? ? -123.03 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 51 ? CG ? A LYS 51 CG 2 1 Y 1 A LYS 51 ? CD ? A LYS 51 CD 3 1 Y 1 A LYS 51 ? CE ? A LYS 51 CE 4 1 Y 1 A LYS 51 ? NZ ? A LYS 51 NZ 5 1 Y 1 A LYS 245 ? CG ? A LYS 245 CG 6 1 Y 1 A LYS 245 ? CD ? A LYS 245 CD 7 1 Y 1 A LYS 245 ? CE ? A LYS 245 CE 8 1 Y 1 A LYS 245 ? NZ ? A LYS 245 NZ 9 1 Y 1 A LYS 271 ? CG ? A LYS 271 CG 10 1 Y 1 A LYS 271 ? CD ? A LYS 271 CD 11 1 Y 1 A LYS 271 ? CE ? A LYS 271 CE 12 1 Y 1 A LYS 271 ? NZ ? A LYS 271 NZ 13 1 Y 1 A GLU 316 ? CG ? A GLU 316 CG 14 1 Y 1 A GLU 316 ? CD ? A GLU 316 CD 15 1 Y 1 A GLU 316 ? OE1 ? A GLU 316 OE1 16 1 Y 1 A GLU 316 ? OE2 ? A GLU 316 OE2 17 1 Y 1 A ASN 319 ? CG ? A ASN 319 CG 18 1 Y 1 A ASN 319 ? OD1 ? A ASN 319 OD1 19 1 Y 1 A ASN 319 ? ND2 ? A ASN 319 ND2 20 1 Y 1 A SER 350 ? OG ? A SER 350 OG 21 1 Y 1 A VAL 379 ? CG1 ? A VAL 379 CG1 22 1 Y 1 A VAL 379 ? CG2 ? A VAL 379 CG2 23 1 Y 1 A ASP 385 ? CG ? A ASP 385 CG 24 1 Y 1 A ASP 385 ? OD1 ? A ASP 385 OD1 25 1 Y 1 A ASP 385 ? OD2 ? A ASP 385 OD2 26 1 Y 1 A ILE 386 ? CG1 ? A ILE 386 CG1 27 1 Y 1 A ILE 386 ? CG2 ? A ILE 386 CG2 28 1 Y 1 A ILE 386 ? CD1 ? A ILE 386 CD1 29 1 Y 1 A LYS 389 ? CG ? A LYS 389 CG 30 1 Y 1 A LYS 389 ? CD ? A LYS 389 CD 31 1 Y 1 A LYS 389 ? CE ? A LYS 389 CE 32 1 Y 1 A LYS 389 ? NZ ? A LYS 389 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A ASP 5 ? A ASP 5 6 1 Y 1 A VAL 6 ? A VAL 6 7 1 Y 1 A GLY 7 ? A GLY 7 8 1 Y 1 A ALA 8 ? A ALA 8 9 1 Y 1 A ALA 9 ? A ALA 9 10 1 Y 1 A ALA 10 ? A ALA 10 11 1 Y 1 A SER 11 ? A SER 11 12 1 Y 1 A SER 12 ? A SER 12 13 1 Y 1 A GLN 13 ? A GLN 13 14 1 Y 1 A GLY 14 ? A GLY 14 15 1 Y 1 A VAL 15 ? A VAL 15 16 1 Y 1 A HIS 16 ? A HIS 16 17 1 Y 1 A ASP 17 ? A ASP 17 18 1 Y 1 A GLN 18 ? A GLN 18 19 1 Y 1 A VAL 19 ? A VAL 19 20 1 Y 1 A LEU 20 ? A LEU 20 21 1 Y 1 A PRO 21 ? A PRO 21 22 1 Y 1 A THR 22 ? A THR 22 23 1 Y 1 A PRO 23 ? A PRO 23 24 1 Y 1 A ASN 24 ? A ASN 24 25 1 Y 1 A SER 351 ? A SER 351 26 1 Y 1 A GLU 352 ? A GLU 352 27 1 Y 1 A LYS 353 ? A LYS 353 28 1 Y 1 A HIS 354 ? A HIS 354 29 1 Y 1 A TYR 355 ? A TYR 355 30 1 Y 1 A LEU 372 ? A LEU 372 31 1 Y 1 A GLY 373 ? A GLY 373 32 1 Y 1 A THR 374 ? A THR 374 33 1 Y 1 A GLY 375 ? A GLY 375 34 1 Y 1 A ASN 376 ? A ASN 376 35 1 Y 1 A TYR 377 ? A TYR 377 36 1 Y 1 A VAL 397 ? A VAL 397 37 1 Y 1 A LYS 398 ? A LYS 398 38 1 Y 1 A MET 399 ? A MET 399 39 1 Y 1 A PRO 400 ? A PRO 400 40 1 Y 1 A PHE 401 ? A PHE 401 41 1 Y 1 A HIS 402 ? A HIS 402 42 1 Y 1 A ALA 415 ? A ALA 415 43 1 Y 1 A LEU 416 ? A LEU 416 44 1 Y 1 A ASN 417 ? A ASN 417 45 1 Y 1 A THR 418 ? A THR 418 46 1 Y 1 A ALA 419 ? A ALA 419 47 1 Y 1 A LYS 420 ? A LYS 420 48 1 Y 1 B DT -4 ? B DT 1 49 1 Y 1 B DC -3 ? B DC 2 50 1 Y 1 B DT -2 ? B DT 3 51 1 Y 1 B 2EG -1 ? B 2EG 4 52 1 Y 1 B DG 0 ? B DG 5 53 1 Y 1 B DG 1 ? B DG 6 54 1 Y 1 B DG 2 ? B DG 7 55 1 Y 1 B DT 3 ? B DT 8 56 1 Y 1 B DC 4 ? B DC 9 57 1 Y 1 B DC 5 ? B DC 10 58 1 Y 1 B DT 6 ? B DT 11 59 1 Y 1 C DT 837 ? C DT 1 60 1 Y 1 C DC 838 ? C DC 2 61 1 Y 1 C DT 839 ? C DT 3 62 1 Y 1 C DA 848 ? C DA 12 63 1 Y 1 C DG 849 ? C DG 13 64 1 Y 1 C DG 850 ? C DG 14 65 1 Y 1 C DA 851 ? C DA 15 66 1 Y 1 C DC 852 ? C DC 16 67 1 Y 1 C DC 853 ? C DC 17 68 1 Y 1 C DOC 854 ? C DOC 18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2EG OP3 O N N 1 2EG OP1 O N N 2 2EG P P N N 3 2EG OP2 O N N 4 2EG "O5'" O N N 5 2EG "C5'" C N N 6 2EG "C4'" C N R 7 2EG "O4'" O N N 8 2EG "C3'" C N S 9 2EG "O3'" O N N 10 2EG "C2'" C N N 11 2EG "C1'" C N R 12 2EG N9 N Y N 13 2EG C4 C Y N 14 2EG N3 N N N 15 2EG C8 C Y N 16 2EG N7 N Y N 17 2EG C5 C Y N 18 2EG C6 C N N 19 2EG O6 O N N 20 2EG N1 N N N 21 2EG C2 C N N 22 2EG N2 N N N 23 2EG C21 C N N 24 2EG C22 C N N 25 2EG "H5'" H N N 26 2EG "H5''" H N N 27 2EG "H4'" H N N 28 2EG "H3'" H N N 29 2EG "H2'" H N N 30 2EG "H2''" H N N 31 2EG "H1'" H N N 32 2EG H8 H N N 33 2EG H1 H N N 34 2EG H21 H N N 35 2EG H211 H N N 36 2EG H212 H N N 37 2EG H221 H N N 38 2EG H222 H N N 39 2EG H223 H N N 40 2EG HO1 H N N 41 2EG HO2 H N N 42 2EG HO3 H N N 43 ALA N N N N 44 ALA CA C N S 45 ALA C C N N 46 ALA O O N N 47 ALA CB C N N 48 ALA OXT O N N 49 ALA H H N N 50 ALA H2 H N N 51 ALA HA H N N 52 ALA HB1 H N N 53 ALA HB2 H N N 54 ALA HB3 H N N 55 ALA HXT H N N 56 ARG N N N N 57 ARG CA C N S 58 ARG C C N N 59 ARG O O N N 60 ARG CB C N N 61 ARG CG C N N 62 ARG CD C N N 63 ARG NE N N N 64 ARG CZ C N N 65 ARG NH1 N N N 66 ARG NH2 N N N 67 ARG OXT O N N 68 ARG H H N N 69 ARG H2 H N N 70 ARG HA H N N 71 ARG HB2 H N N 72 ARG HB3 H N N 73 ARG HG2 H N N 74 ARG HG3 H N N 75 ARG HD2 H N N 76 ARG HD3 H N N 77 ARG HE H N N 78 ARG HH11 H N N 79 ARG HH12 H N N 80 ARG HH21 H N N 81 ARG HH22 H N N 82 ARG HXT H N N 83 ASN N N N N 84 ASN CA C N S 85 ASN C C N N 86 ASN O O N N 87 ASN CB C N N 88 ASN CG C N N 89 ASN OD1 O N N 90 ASN ND2 N N N 91 ASN OXT O N N 92 ASN H H N N 93 ASN H2 H N N 94 ASN HA H N N 95 ASN HB2 H N N 96 ASN HB3 H N N 97 ASN HD21 H N N 98 ASN HD22 H N N 99 ASN HXT H N N 100 ASP N N N N 101 ASP CA C N S 102 ASP C C N N 103 ASP O O N N 104 ASP CB C N N 105 ASP CG C N N 106 ASP OD1 O N N 107 ASP OD2 O N N 108 ASP OXT O N N 109 ASP H H N N 110 ASP H2 H N N 111 ASP HA H N N 112 ASP HB2 H N N 113 ASP HB3 H N N 114 ASP HD2 H N N 115 ASP HXT H N N 116 CYS N N N N 117 CYS CA C N R 118 CYS C C N N 119 CYS O O N N 120 CYS CB C N N 121 CYS SG S N N 122 CYS OXT O N N 123 CYS H H N N 124 CYS H2 H N N 125 CYS HA H N N 126 CYS HB2 H N N 127 CYS HB3 H N N 128 CYS HG H N N 129 CYS HXT H N N 130 DA OP3 O N N 131 DA P P N N 132 DA OP1 O N N 133 DA OP2 O N N 134 DA "O5'" O N N 135 DA "C5'" C N N 136 DA "C4'" C N R 137 DA "O4'" O N N 138 DA "C3'" C N S 139 DA "O3'" O N N 140 DA "C2'" C N N 141 DA "C1'" C N R 142 DA N9 N Y N 143 DA C8 C Y N 144 DA N7 N Y N 145 DA C5 C Y N 146 DA C6 C Y N 147 DA N6 N N N 148 DA N1 N Y N 149 DA C2 C Y N 150 DA N3 N Y N 151 DA C4 C Y N 152 DA HOP3 H N N 153 DA HOP2 H N N 154 DA "H5'" H N N 155 DA "H5''" H N N 156 DA "H4'" H N N 157 DA "H3'" H N N 158 DA "HO3'" H N N 159 DA "H2'" H N N 160 DA "H2''" H N N 161 DA "H1'" H N N 162 DA H8 H N N 163 DA H61 H N N 164 DA H62 H N N 165 DA H2 H N N 166 DC OP3 O N N 167 DC P P N N 168 DC OP1 O N N 169 DC OP2 O N N 170 DC "O5'" O N N 171 DC "C5'" C N N 172 DC "C4'" C N R 173 DC "O4'" O N N 174 DC "C3'" C N S 175 DC "O3'" O N N 176 DC "C2'" C N N 177 DC "C1'" C N R 178 DC N1 N N N 179 DC C2 C N N 180 DC O2 O N N 181 DC N3 N N N 182 DC C4 C N N 183 DC N4 N N N 184 DC C5 C N N 185 DC C6 C N N 186 DC HOP3 H N N 187 DC HOP2 H N N 188 DC "H5'" H N N 189 DC "H5''" H N N 190 DC "H4'" H N N 191 DC "H3'" H N N 192 DC "HO3'" H N N 193 DC "H2'" H N N 194 DC "H2''" H N N 195 DC "H1'" H N N 196 DC H41 H N N 197 DC H42 H N N 198 DC H5 H N N 199 DC H6 H N N 200 DG OP3 O N N 201 DG P P N N 202 DG OP1 O N N 203 DG OP2 O N N 204 DG "O5'" O N N 205 DG "C5'" C N N 206 DG "C4'" C N R 207 DG "O4'" O N N 208 DG "C3'" C N S 209 DG "O3'" O N N 210 DG "C2'" C N N 211 DG "C1'" C N R 212 DG N9 N Y N 213 DG C8 C Y N 214 DG N7 N Y N 215 DG C5 C Y N 216 DG C6 C N N 217 DG O6 O N N 218 DG N1 N N N 219 DG C2 C N N 220 DG N2 N N N 221 DG N3 N N N 222 DG C4 C Y N 223 DG HOP3 H N N 224 DG HOP2 H N N 225 DG "H5'" H N N 226 DG "H5''" H N N 227 DG "H4'" H N N 228 DG "H3'" H N N 229 DG "HO3'" H N N 230 DG "H2'" H N N 231 DG "H2''" H N N 232 DG "H1'" H N N 233 DG H8 H N N 234 DG H1 H N N 235 DG H21 H N N 236 DG H22 H N N 237 DOC N1 N N N 238 DOC C2 C N N 239 DOC N3 N N N 240 DOC C4 C N N 241 DOC C5 C N N 242 DOC C6 C N N 243 DOC O2 O N N 244 DOC N4 N N N 245 DOC "C1'" C N R 246 DOC "C2'" C N N 247 DOC "C3'" C N N 248 DOC "C4'" C N S 249 DOC "O4'" O N N 250 DOC "C5'" C N N 251 DOC "O5'" O N N 252 DOC P P N N 253 DOC OP1 O N N 254 DOC OP2 O N N 255 DOC OP3 O N N 256 DOC H5 H N N 257 DOC H6 H N N 258 DOC HN41 H N N 259 DOC HN42 H N N 260 DOC "H1'" H N N 261 DOC "H2'" H N N 262 DOC "H2''" H N N 263 DOC "H3'1" H N N 264 DOC "H3'2" H N N 265 DOC "H4'" H N N 266 DOC "H5'" H N N 267 DOC "H5''" H N N 268 DOC HOP2 H N N 269 DOC HOP3 H N N 270 DT OP3 O N N 271 DT P P N N 272 DT OP1 O N N 273 DT OP2 O N N 274 DT "O5'" O N N 275 DT "C5'" C N N 276 DT "C4'" C N R 277 DT "O4'" O N N 278 DT "C3'" C N S 279 DT "O3'" O N N 280 DT "C2'" C N N 281 DT "C1'" C N R 282 DT N1 N N N 283 DT C2 C N N 284 DT O2 O N N 285 DT N3 N N N 286 DT C4 C N N 287 DT O4 O N N 288 DT C5 C N N 289 DT C7 C N N 290 DT C6 C N N 291 DT HOP3 H N N 292 DT HOP2 H N N 293 DT "H5'" H N N 294 DT "H5''" H N N 295 DT "H4'" H N N 296 DT "H3'" H N N 297 DT "HO3'" H N N 298 DT "H2'" H N N 299 DT "H2''" H N N 300 DT "H1'" H N N 301 DT H3 H N N 302 DT H71 H N N 303 DT H72 H N N 304 DT H73 H N N 305 DT H6 H N N 306 GLN N N N N 307 GLN CA C N S 308 GLN C C N N 309 GLN O O N N 310 GLN CB C N N 311 GLN CG C N N 312 GLN CD C N N 313 GLN OE1 O N N 314 GLN NE2 N N N 315 GLN OXT O N N 316 GLN H H N N 317 GLN H2 H N N 318 GLN HA H N N 319 GLN HB2 H N N 320 GLN HB3 H N N 321 GLN HG2 H N N 322 GLN HG3 H N N 323 GLN HE21 H N N 324 GLN HE22 H N N 325 GLN HXT H N N 326 GLU N N N N 327 GLU CA C N S 328 GLU C C N N 329 GLU O O N N 330 GLU CB C N N 331 GLU CG C N N 332 GLU CD C N N 333 GLU OE1 O N N 334 GLU OE2 O N N 335 GLU OXT O N N 336 GLU H H N N 337 GLU H2 H N N 338 GLU HA H N N 339 GLU HB2 H N N 340 GLU HB3 H N N 341 GLU HG2 H N N 342 GLU HG3 H N N 343 GLU HE2 H N N 344 GLU HXT H N N 345 GLY N N N N 346 GLY CA C N N 347 GLY C C N N 348 GLY O O N N 349 GLY OXT O N N 350 GLY H H N N 351 GLY H2 H N N 352 GLY HA2 H N N 353 GLY HA3 H N N 354 GLY HXT H N N 355 HIS N N N N 356 HIS CA C N S 357 HIS C C N N 358 HIS O O N N 359 HIS CB C N N 360 HIS CG C Y N 361 HIS ND1 N Y N 362 HIS CD2 C Y N 363 HIS CE1 C Y N 364 HIS NE2 N Y N 365 HIS OXT O N N 366 HIS H H N N 367 HIS H2 H N N 368 HIS HA H N N 369 HIS HB2 H N N 370 HIS HB3 H N N 371 HIS HD1 H N N 372 HIS HD2 H N N 373 HIS HE1 H N N 374 HIS HE2 H N N 375 HIS HXT H N N 376 HOH O O N N 377 HOH H1 H N N 378 HOH H2 H N N 379 ILE N N N N 380 ILE CA C N S 381 ILE C C N N 382 ILE O O N N 383 ILE CB C N S 384 ILE CG1 C N N 385 ILE CG2 C N N 386 ILE CD1 C N N 387 ILE OXT O N N 388 ILE H H N N 389 ILE H2 H N N 390 ILE HA H N N 391 ILE HB H N N 392 ILE HG12 H N N 393 ILE HG13 H N N 394 ILE HG21 H N N 395 ILE HG22 H N N 396 ILE HG23 H N N 397 ILE HD11 H N N 398 ILE HD12 H N N 399 ILE HD13 H N N 400 ILE HXT H N N 401 LEU N N N N 402 LEU CA C N S 403 LEU C C N N 404 LEU O O N N 405 LEU CB C N N 406 LEU CG C N N 407 LEU CD1 C N N 408 LEU CD2 C N N 409 LEU OXT O N N 410 LEU H H N N 411 LEU H2 H N N 412 LEU HA H N N 413 LEU HB2 H N N 414 LEU HB3 H N N 415 LEU HG H N N 416 LEU HD11 H N N 417 LEU HD12 H N N 418 LEU HD13 H N N 419 LEU HD21 H N N 420 LEU HD22 H N N 421 LEU HD23 H N N 422 LEU HXT H N N 423 LYS N N N N 424 LYS CA C N S 425 LYS C C N N 426 LYS O O N N 427 LYS CB C N N 428 LYS CG C N N 429 LYS CD C N N 430 LYS CE C N N 431 LYS NZ N N N 432 LYS OXT O N N 433 LYS H H N N 434 LYS H2 H N N 435 LYS HA H N N 436 LYS HB2 H N N 437 LYS HB3 H N N 438 LYS HG2 H N N 439 LYS HG3 H N N 440 LYS HD2 H N N 441 LYS HD3 H N N 442 LYS HE2 H N N 443 LYS HE3 H N N 444 LYS HZ1 H N N 445 LYS HZ2 H N N 446 LYS HZ3 H N N 447 LYS HXT H N N 448 MET N N N N 449 MET CA C N S 450 MET C C N N 451 MET O O N N 452 MET CB C N N 453 MET CG C N N 454 MET SD S N N 455 MET CE C N N 456 MET OXT O N N 457 MET H H N N 458 MET H2 H N N 459 MET HA H N N 460 MET HB2 H N N 461 MET HB3 H N N 462 MET HG2 H N N 463 MET HG3 H N N 464 MET HE1 H N N 465 MET HE2 H N N 466 MET HE3 H N N 467 MET HXT H N N 468 NA NA NA N N 469 PHE N N N N 470 PHE CA C N S 471 PHE C C N N 472 PHE O O N N 473 PHE CB C N N 474 PHE CG C Y N 475 PHE CD1 C Y N 476 PHE CD2 C Y N 477 PHE CE1 C Y N 478 PHE CE2 C Y N 479 PHE CZ C Y N 480 PHE OXT O N N 481 PHE H H N N 482 PHE H2 H N N 483 PHE HA H N N 484 PHE HB2 H N N 485 PHE HB3 H N N 486 PHE HD1 H N N 487 PHE HD2 H N N 488 PHE HE1 H N N 489 PHE HE2 H N N 490 PHE HZ H N N 491 PHE HXT H N N 492 PO4 P P N N 493 PO4 O1 O N N 494 PO4 O2 O N N 495 PO4 O3 O N N 496 PO4 O4 O N N 497 PRO N N N N 498 PRO CA C N S 499 PRO C C N N 500 PRO O O N N 501 PRO CB C N N 502 PRO CG C N N 503 PRO CD C N N 504 PRO OXT O N N 505 PRO H H N N 506 PRO HA H N N 507 PRO HB2 H N N 508 PRO HB3 H N N 509 PRO HG2 H N N 510 PRO HG3 H N N 511 PRO HD2 H N N 512 PRO HD3 H N N 513 PRO HXT H N N 514 SER N N N N 515 SER CA C N S 516 SER C C N N 517 SER O O N N 518 SER CB C N N 519 SER OG O N N 520 SER OXT O N N 521 SER H H N N 522 SER H2 H N N 523 SER HA H N N 524 SER HB2 H N N 525 SER HB3 H N N 526 SER HG H N N 527 SER HXT H N N 528 THR N N N N 529 THR CA C N S 530 THR C C N N 531 THR O O N N 532 THR CB C N R 533 THR OG1 O N N 534 THR CG2 C N N 535 THR OXT O N N 536 THR H H N N 537 THR H2 H N N 538 THR HA H N N 539 THR HB H N N 540 THR HG1 H N N 541 THR HG21 H N N 542 THR HG22 H N N 543 THR HG23 H N N 544 THR HXT H N N 545 TYR N N N N 546 TYR CA C N S 547 TYR C C N N 548 TYR O O N N 549 TYR CB C N N 550 TYR CG C Y N 551 TYR CD1 C Y N 552 TYR CD2 C Y N 553 TYR CE1 C Y N 554 TYR CE2 C Y N 555 TYR CZ C Y N 556 TYR OH O N N 557 TYR OXT O N N 558 TYR H H N N 559 TYR H2 H N N 560 TYR HA H N N 561 TYR HB2 H N N 562 TYR HB3 H N N 563 TYR HD1 H N N 564 TYR HD2 H N N 565 TYR HE1 H N N 566 TYR HE2 H N N 567 TYR HH H N N 568 TYR HXT H N N 569 VAL N N N N 570 VAL CA C N S 571 VAL C C N N 572 VAL O O N N 573 VAL CB C N N 574 VAL CG1 C N N 575 VAL CG2 C N N 576 VAL OXT O N N 577 VAL H H N N 578 VAL H2 H N N 579 VAL HA H N N 580 VAL HB H N N 581 VAL HG11 H N N 582 VAL HG12 H N N 583 VAL HG13 H N N 584 VAL HG21 H N N 585 VAL HG22 H N N 586 VAL HG23 H N N 587 VAL HXT H N N 588 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2EG OP3 P doub N N 1 2EG OP1 P sing N N 2 2EG P OP2 sing N N 3 2EG P "O5'" sing N N 4 2EG "O5'" "C5'" sing N N 5 2EG "C5'" "C4'" sing N N 6 2EG "C5'" "H5'" sing N N 7 2EG "C5'" "H5''" sing N N 8 2EG "C4'" "O4'" sing N N 9 2EG "C4'" "C3'" sing N N 10 2EG "C4'" "H4'" sing N N 11 2EG "O4'" "C1'" sing N N 12 2EG "C3'" "O3'" sing N N 13 2EG "C3'" "C2'" sing N N 14 2EG "C3'" "H3'" sing N N 15 2EG "C2'" "C1'" sing N N 16 2EG "C2'" "H2'" sing N N 17 2EG "C2'" "H2''" sing N N 18 2EG "C1'" N9 sing N N 19 2EG "C1'" "H1'" sing N N 20 2EG N9 C4 sing Y N 21 2EG N9 C8 sing Y N 22 2EG C4 N3 sing N N 23 2EG C4 C5 doub Y N 24 2EG N3 C2 doub N N 25 2EG C8 N7 doub Y N 26 2EG C8 H8 sing N N 27 2EG N7 C5 sing Y N 28 2EG C5 C6 sing N N 29 2EG C6 O6 doub N N 30 2EG C6 N1 sing N N 31 2EG N1 C2 sing N N 32 2EG N1 H1 sing N N 33 2EG C2 N2 sing N N 34 2EG N2 C21 sing N N 35 2EG N2 H21 sing N N 36 2EG C21 C22 sing N N 37 2EG C21 H211 sing N N 38 2EG C21 H212 sing N N 39 2EG C22 H221 sing N N 40 2EG C22 H222 sing N N 41 2EG C22 H223 sing N N 42 2EG HO1 "O3'" sing N N 43 2EG HO2 OP2 sing N N 44 2EG HO3 OP1 sing N N 45 ALA N CA sing N N 46 ALA N H sing N N 47 ALA N H2 sing N N 48 ALA CA C sing N N 49 ALA CA CB sing N N 50 ALA CA HA sing N N 51 ALA C O doub N N 52 ALA C OXT sing N N 53 ALA CB HB1 sing N N 54 ALA CB HB2 sing N N 55 ALA CB HB3 sing N N 56 ALA OXT HXT sing N N 57 ARG N CA sing N N 58 ARG N H sing N N 59 ARG N H2 sing N N 60 ARG CA C sing N N 61 ARG CA CB sing N N 62 ARG CA HA sing N N 63 ARG C O doub N N 64 ARG C OXT sing N N 65 ARG CB CG sing N N 66 ARG CB HB2 sing N N 67 ARG CB HB3 sing N N 68 ARG CG CD sing N N 69 ARG CG HG2 sing N N 70 ARG CG HG3 sing N N 71 ARG CD NE sing N N 72 ARG CD HD2 sing N N 73 ARG CD HD3 sing N N 74 ARG NE CZ sing N N 75 ARG NE HE sing N N 76 ARG CZ NH1 sing N N 77 ARG CZ NH2 doub N N 78 ARG NH1 HH11 sing N N 79 ARG NH1 HH12 sing N N 80 ARG NH2 HH21 sing N N 81 ARG NH2 HH22 sing N N 82 ARG OXT HXT sing N N 83 ASN N CA sing N N 84 ASN N H sing N N 85 ASN N H2 sing N N 86 ASN CA C sing N N 87 ASN CA CB sing N N 88 ASN CA HA sing N N 89 ASN C O doub N N 90 ASN C OXT sing N N 91 ASN CB CG sing N N 92 ASN CB HB2 sing N N 93 ASN CB HB3 sing N N 94 ASN CG OD1 doub N N 95 ASN CG ND2 sing N N 96 ASN ND2 HD21 sing N N 97 ASN ND2 HD22 sing N N 98 ASN OXT HXT sing N N 99 ASP N CA sing N N 100 ASP N H sing N N 101 ASP N H2 sing N N 102 ASP CA C sing N N 103 ASP CA CB sing N N 104 ASP CA HA sing N N 105 ASP C O doub N N 106 ASP C OXT sing N N 107 ASP CB CG sing N N 108 ASP CB HB2 sing N N 109 ASP CB HB3 sing N N 110 ASP CG OD1 doub N N 111 ASP CG OD2 sing N N 112 ASP OD2 HD2 sing N N 113 ASP OXT HXT sing N N 114 CYS N CA sing N N 115 CYS N H sing N N 116 CYS N H2 sing N N 117 CYS CA C sing N N 118 CYS CA CB sing N N 119 CYS CA HA sing N N 120 CYS C O doub N N 121 CYS C OXT sing N N 122 CYS CB SG sing N N 123 CYS CB HB2 sing N N 124 CYS CB HB3 sing N N 125 CYS SG HG sing N N 126 CYS OXT HXT sing N N 127 DA OP3 P sing N N 128 DA OP3 HOP3 sing N N 129 DA P OP1 doub N N 130 DA P OP2 sing N N 131 DA P "O5'" sing N N 132 DA OP2 HOP2 sing N N 133 DA "O5'" "C5'" sing N N 134 DA "C5'" "C4'" sing N N 135 DA "C5'" "H5'" sing N N 136 DA "C5'" "H5''" sing N N 137 DA "C4'" "O4'" sing N N 138 DA "C4'" "C3'" sing N N 139 DA "C4'" "H4'" sing N N 140 DA "O4'" "C1'" sing N N 141 DA "C3'" "O3'" sing N N 142 DA "C3'" "C2'" sing N N 143 DA "C3'" "H3'" sing N N 144 DA "O3'" "HO3'" sing N N 145 DA "C2'" "C1'" sing N N 146 DA "C2'" "H2'" sing N N 147 DA "C2'" "H2''" sing N N 148 DA "C1'" N9 sing N N 149 DA "C1'" "H1'" sing N N 150 DA N9 C8 sing Y N 151 DA N9 C4 sing Y N 152 DA C8 N7 doub Y N 153 DA C8 H8 sing N N 154 DA N7 C5 sing Y N 155 DA C5 C6 sing Y N 156 DA C5 C4 doub Y N 157 DA C6 N6 sing N N 158 DA C6 N1 doub Y N 159 DA N6 H61 sing N N 160 DA N6 H62 sing N N 161 DA N1 C2 sing Y N 162 DA C2 N3 doub Y N 163 DA C2 H2 sing N N 164 DA N3 C4 sing Y N 165 DC OP3 P sing N N 166 DC OP3 HOP3 sing N N 167 DC P OP1 doub N N 168 DC P OP2 sing N N 169 DC P "O5'" sing N N 170 DC OP2 HOP2 sing N N 171 DC "O5'" "C5'" sing N N 172 DC "C5'" "C4'" sing N N 173 DC "C5'" "H5'" sing N N 174 DC "C5'" "H5''" sing N N 175 DC "C4'" "O4'" sing N N 176 DC "C4'" "C3'" sing N N 177 DC "C4'" "H4'" sing N N 178 DC "O4'" "C1'" sing N N 179 DC "C3'" "O3'" sing N N 180 DC "C3'" "C2'" sing N N 181 DC "C3'" "H3'" sing N N 182 DC "O3'" "HO3'" sing N N 183 DC "C2'" "C1'" sing N N 184 DC "C2'" "H2'" sing N N 185 DC "C2'" "H2''" sing N N 186 DC "C1'" N1 sing N N 187 DC "C1'" "H1'" sing N N 188 DC N1 C2 sing N N 189 DC N1 C6 sing N N 190 DC C2 O2 doub N N 191 DC C2 N3 sing N N 192 DC N3 C4 doub N N 193 DC C4 N4 sing N N 194 DC C4 C5 sing N N 195 DC N4 H41 sing N N 196 DC N4 H42 sing N N 197 DC C5 C6 doub N N 198 DC C5 H5 sing N N 199 DC C6 H6 sing N N 200 DG OP3 P sing N N 201 DG OP3 HOP3 sing N N 202 DG P OP1 doub N N 203 DG P OP2 sing N N 204 DG P "O5'" sing N N 205 DG OP2 HOP2 sing N N 206 DG "O5'" "C5'" sing N N 207 DG "C5'" "C4'" sing N N 208 DG "C5'" "H5'" sing N N 209 DG "C5'" "H5''" sing N N 210 DG "C4'" "O4'" sing N N 211 DG "C4'" "C3'" sing N N 212 DG "C4'" "H4'" sing N N 213 DG "O4'" "C1'" sing N N 214 DG "C3'" "O3'" sing N N 215 DG "C3'" "C2'" sing N N 216 DG "C3'" "H3'" sing N N 217 DG "O3'" "HO3'" sing N N 218 DG "C2'" "C1'" sing N N 219 DG "C2'" "H2'" sing N N 220 DG "C2'" "H2''" sing N N 221 DG "C1'" N9 sing N N 222 DG "C1'" "H1'" sing N N 223 DG N9 C8 sing Y N 224 DG N9 C4 sing Y N 225 DG C8 N7 doub Y N 226 DG C8 H8 sing N N 227 DG N7 C5 sing Y N 228 DG C5 C6 sing N N 229 DG C5 C4 doub Y N 230 DG C6 O6 doub N N 231 DG C6 N1 sing N N 232 DG N1 C2 sing N N 233 DG N1 H1 sing N N 234 DG C2 N2 sing N N 235 DG C2 N3 doub N N 236 DG N2 H21 sing N N 237 DG N2 H22 sing N N 238 DG N3 C4 sing N N 239 DOC N1 C2 sing N N 240 DOC N1 C6 sing N N 241 DOC N1 "C1'" sing N N 242 DOC C2 N3 sing N N 243 DOC C2 O2 doub N N 244 DOC N3 C4 doub N N 245 DOC C4 C5 sing N N 246 DOC C4 N4 sing N N 247 DOC C5 C6 doub N N 248 DOC C5 H5 sing N N 249 DOC C6 H6 sing N N 250 DOC N4 HN41 sing N N 251 DOC N4 HN42 sing N N 252 DOC "C1'" "C2'" sing N N 253 DOC "C1'" "O4'" sing N N 254 DOC "C1'" "H1'" sing N N 255 DOC "C2'" "C3'" sing N N 256 DOC "C2'" "H2'" sing N N 257 DOC "C2'" "H2''" sing N N 258 DOC "C3'" "C4'" sing N N 259 DOC "C3'" "H3'1" sing N N 260 DOC "C3'" "H3'2" sing N N 261 DOC "C4'" "O4'" sing N N 262 DOC "C4'" "C5'" sing N N 263 DOC "C4'" "H4'" sing N N 264 DOC "C5'" "O5'" sing N N 265 DOC "C5'" "H5'" sing N N 266 DOC "C5'" "H5''" sing N N 267 DOC "O5'" P sing N N 268 DOC P OP1 doub N N 269 DOC P OP2 sing N N 270 DOC P OP3 sing N N 271 DOC OP2 HOP2 sing N N 272 DOC OP3 HOP3 sing N N 273 DT OP3 P sing N N 274 DT OP3 HOP3 sing N N 275 DT P OP1 doub N N 276 DT P OP2 sing N N 277 DT P "O5'" sing N N 278 DT OP2 HOP2 sing N N 279 DT "O5'" "C5'" sing N N 280 DT "C5'" "C4'" sing N N 281 DT "C5'" "H5'" sing N N 282 DT "C5'" "H5''" sing N N 283 DT "C4'" "O4'" sing N N 284 DT "C4'" "C3'" sing N N 285 DT "C4'" "H4'" sing N N 286 DT "O4'" "C1'" sing N N 287 DT "C3'" "O3'" sing N N 288 DT "C3'" "C2'" sing N N 289 DT "C3'" "H3'" sing N N 290 DT "O3'" "HO3'" sing N N 291 DT "C2'" "C1'" sing N N 292 DT "C2'" "H2'" sing N N 293 DT "C2'" "H2''" sing N N 294 DT "C1'" N1 sing N N 295 DT "C1'" "H1'" sing N N 296 DT N1 C2 sing N N 297 DT N1 C6 sing N N 298 DT C2 O2 doub N N 299 DT C2 N3 sing N N 300 DT N3 C4 sing N N 301 DT N3 H3 sing N N 302 DT C4 O4 doub N N 303 DT C4 C5 sing N N 304 DT C5 C7 sing N N 305 DT C5 C6 doub N N 306 DT C7 H71 sing N N 307 DT C7 H72 sing N N 308 DT C7 H73 sing N N 309 DT C6 H6 sing N N 310 GLN N CA sing N N 311 GLN N H sing N N 312 GLN N H2 sing N N 313 GLN CA C sing N N 314 GLN CA CB sing N N 315 GLN CA HA sing N N 316 GLN C O doub N N 317 GLN C OXT sing N N 318 GLN CB CG sing N N 319 GLN CB HB2 sing N N 320 GLN CB HB3 sing N N 321 GLN CG CD sing N N 322 GLN CG HG2 sing N N 323 GLN CG HG3 sing N N 324 GLN CD OE1 doub N N 325 GLN CD NE2 sing N N 326 GLN NE2 HE21 sing N N 327 GLN NE2 HE22 sing N N 328 GLN OXT HXT sing N N 329 GLU N CA sing N N 330 GLU N H sing N N 331 GLU N H2 sing N N 332 GLU CA C sing N N 333 GLU CA CB sing N N 334 GLU CA HA sing N N 335 GLU C O doub N N 336 GLU C OXT sing N N 337 GLU CB CG sing N N 338 GLU CB HB2 sing N N 339 GLU CB HB3 sing N N 340 GLU CG CD sing N N 341 GLU CG HG2 sing N N 342 GLU CG HG3 sing N N 343 GLU CD OE1 doub N N 344 GLU CD OE2 sing N N 345 GLU OE2 HE2 sing N N 346 GLU OXT HXT sing N N 347 GLY N CA sing N N 348 GLY N H sing N N 349 GLY N H2 sing N N 350 GLY CA C sing N N 351 GLY CA HA2 sing N N 352 GLY CA HA3 sing N N 353 GLY C O doub N N 354 GLY C OXT sing N N 355 GLY OXT HXT sing N N 356 HIS N CA sing N N 357 HIS N H sing N N 358 HIS N H2 sing N N 359 HIS CA C sing N N 360 HIS CA CB sing N N 361 HIS CA HA sing N N 362 HIS C O doub N N 363 HIS C OXT sing N N 364 HIS CB CG sing N N 365 HIS CB HB2 sing N N 366 HIS CB HB3 sing N N 367 HIS CG ND1 sing Y N 368 HIS CG CD2 doub Y N 369 HIS ND1 CE1 doub Y N 370 HIS ND1 HD1 sing N N 371 HIS CD2 NE2 sing Y N 372 HIS CD2 HD2 sing N N 373 HIS CE1 NE2 sing Y N 374 HIS CE1 HE1 sing N N 375 HIS NE2 HE2 sing N N 376 HIS OXT HXT sing N N 377 HOH O H1 sing N N 378 HOH O H2 sing N N 379 ILE N CA sing N N 380 ILE N H sing N N 381 ILE N H2 sing N N 382 ILE CA C sing N N 383 ILE CA CB sing N N 384 ILE CA HA sing N N 385 ILE C O doub N N 386 ILE C OXT sing N N 387 ILE CB CG1 sing N N 388 ILE CB CG2 sing N N 389 ILE CB HB sing N N 390 ILE CG1 CD1 sing N N 391 ILE CG1 HG12 sing N N 392 ILE CG1 HG13 sing N N 393 ILE CG2 HG21 sing N N 394 ILE CG2 HG22 sing N N 395 ILE CG2 HG23 sing N N 396 ILE CD1 HD11 sing N N 397 ILE CD1 HD12 sing N N 398 ILE CD1 HD13 sing N N 399 ILE OXT HXT sing N N 400 LEU N CA sing N N 401 LEU N H sing N N 402 LEU N H2 sing N N 403 LEU CA C sing N N 404 LEU CA CB sing N N 405 LEU CA HA sing N N 406 LEU C O doub N N 407 LEU C OXT sing N N 408 LEU CB CG sing N N 409 LEU CB HB2 sing N N 410 LEU CB HB3 sing N N 411 LEU CG CD1 sing N N 412 LEU CG CD2 sing N N 413 LEU CG HG sing N N 414 LEU CD1 HD11 sing N N 415 LEU CD1 HD12 sing N N 416 LEU CD1 HD13 sing N N 417 LEU CD2 HD21 sing N N 418 LEU CD2 HD22 sing N N 419 LEU CD2 HD23 sing N N 420 LEU OXT HXT sing N N 421 LYS N CA sing N N 422 LYS N H sing N N 423 LYS N H2 sing N N 424 LYS CA C sing N N 425 LYS CA CB sing N N 426 LYS CA HA sing N N 427 LYS C O doub N N 428 LYS C OXT sing N N 429 LYS CB CG sing N N 430 LYS CB HB2 sing N N 431 LYS CB HB3 sing N N 432 LYS CG CD sing N N 433 LYS CG HG2 sing N N 434 LYS CG HG3 sing N N 435 LYS CD CE sing N N 436 LYS CD HD2 sing N N 437 LYS CD HD3 sing N N 438 LYS CE NZ sing N N 439 LYS CE HE2 sing N N 440 LYS CE HE3 sing N N 441 LYS NZ HZ1 sing N N 442 LYS NZ HZ2 sing N N 443 LYS NZ HZ3 sing N N 444 LYS OXT HXT sing N N 445 MET N CA sing N N 446 MET N H sing N N 447 MET N H2 sing N N 448 MET CA C sing N N 449 MET CA CB sing N N 450 MET CA HA sing N N 451 MET C O doub N N 452 MET C OXT sing N N 453 MET CB CG sing N N 454 MET CB HB2 sing N N 455 MET CB HB3 sing N N 456 MET CG SD sing N N 457 MET CG HG2 sing N N 458 MET CG HG3 sing N N 459 MET SD CE sing N N 460 MET CE HE1 sing N N 461 MET CE HE2 sing N N 462 MET CE HE3 sing N N 463 MET OXT HXT sing N N 464 PHE N CA sing N N 465 PHE N H sing N N 466 PHE N H2 sing N N 467 PHE CA C sing N N 468 PHE CA CB sing N N 469 PHE CA HA sing N N 470 PHE C O doub N N 471 PHE C OXT sing N N 472 PHE CB CG sing N N 473 PHE CB HB2 sing N N 474 PHE CB HB3 sing N N 475 PHE CG CD1 doub Y N 476 PHE CG CD2 sing Y N 477 PHE CD1 CE1 sing Y N 478 PHE CD1 HD1 sing N N 479 PHE CD2 CE2 doub Y N 480 PHE CD2 HD2 sing N N 481 PHE CE1 CZ doub Y N 482 PHE CE1 HE1 sing N N 483 PHE CE2 CZ sing Y N 484 PHE CE2 HE2 sing N N 485 PHE CZ HZ sing N N 486 PHE OXT HXT sing N N 487 PO4 P O1 doub N N 488 PO4 P O2 sing N N 489 PO4 P O3 sing N N 490 PO4 P O4 sing N N 491 PRO N CA sing N N 492 PRO N CD sing N N 493 PRO N H sing N N 494 PRO CA C sing N N 495 PRO CA CB sing N N 496 PRO CA HA sing N N 497 PRO C O doub N N 498 PRO C OXT sing N N 499 PRO CB CG sing N N 500 PRO CB HB2 sing N N 501 PRO CB HB3 sing N N 502 PRO CG CD sing N N 503 PRO CG HG2 sing N N 504 PRO CG HG3 sing N N 505 PRO CD HD2 sing N N 506 PRO CD HD3 sing N N 507 PRO OXT HXT sing N N 508 SER N CA sing N N 509 SER N H sing N N 510 SER N H2 sing N N 511 SER CA C sing N N 512 SER CA CB sing N N 513 SER CA HA sing N N 514 SER C O doub N N 515 SER C OXT sing N N 516 SER CB OG sing N N 517 SER CB HB2 sing N N 518 SER CB HB3 sing N N 519 SER OG HG sing N N 520 SER OXT HXT sing N N 521 THR N CA sing N N 522 THR N H sing N N 523 THR N H2 sing N N 524 THR CA C sing N N 525 THR CA CB sing N N 526 THR CA HA sing N N 527 THR C O doub N N 528 THR C OXT sing N N 529 THR CB OG1 sing N N 530 THR CB CG2 sing N N 531 THR CB HB sing N N 532 THR OG1 HG1 sing N N 533 THR CG2 HG21 sing N N 534 THR CG2 HG22 sing N N 535 THR CG2 HG23 sing N N 536 THR OXT HXT sing N N 537 TYR N CA sing N N 538 TYR N H sing N N 539 TYR N H2 sing N N 540 TYR CA C sing N N 541 TYR CA CB sing N N 542 TYR CA HA sing N N 543 TYR C O doub N N 544 TYR C OXT sing N N 545 TYR CB CG sing N N 546 TYR CB HB2 sing N N 547 TYR CB HB3 sing N N 548 TYR CG CD1 doub Y N 549 TYR CG CD2 sing Y N 550 TYR CD1 CE1 sing Y N 551 TYR CD1 HD1 sing N N 552 TYR CD2 CE2 doub Y N 553 TYR CD2 HD2 sing N N 554 TYR CE1 CZ doub Y N 555 TYR CE1 HE1 sing N N 556 TYR CE2 CZ sing Y N 557 TYR CE2 HE2 sing N N 558 TYR CZ OH sing N N 559 TYR OH HH sing N N 560 TYR OXT HXT sing N N 561 VAL N CA sing N N 562 VAL N H sing N N 563 VAL N H2 sing N N 564 VAL CA C sing N N 565 VAL CA CB sing N N 566 VAL CA HA sing N N 567 VAL C O doub N N 568 VAL C OXT sing N N 569 VAL CB CG1 sing N N 570 VAL CB CG2 sing N N 571 VAL CB HB sing N N 572 VAL CG1 HG11 sing N N 573 VAL CG1 HG12 sing N N 574 VAL CG1 HG13 sing N N 575 VAL CG2 HG21 sing N N 576 VAL CG2 HG22 sing N N 577 VAL CG2 HG23 sing N N 578 VAL OXT HXT sing N N 579 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3EPI 'double helix' 3EPI 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 12 1_555 C DT 11 1_555 -0.538 -0.250 0.127 7.579 -4.137 -5.610 1 B_DA7:DT847_C B 7 ? C 847 ? 20 1 1 B DG 13 1_555 C DC 10 1_555 0.041 0.051 0.442 10.157 -4.343 1.670 2 B_DG8:DC846_C B 8 ? C 846 ? 19 1 1 B DG 14 1_555 C DC 9 1_555 0.009 -0.039 0.014 2.427 -3.900 4.103 3 B_DG9:DC845_C B 9 ? C 845 ? 19 1 1 B DA 15 1_555 C DT 8 1_555 0.108 -0.355 0.116 8.242 -7.550 1.371 4 B_DA10:DT844_C B 10 ? C 844 ? 20 1 1 B DC 16 1_555 C DG 7 1_555 0.029 -0.116 0.012 12.930 -13.293 2.138 5 B_DC11:DG843_C B 11 ? C 843 ? 19 1 1 B DC 17 1_555 C DG 6 1_555 0.257 -0.229 0.126 7.970 -10.242 -2.006 6 B_DC12:DG842_C B 12 ? C 842 ? 19 1 1 B DOC 18 1_555 C DG 5 1_555 -0.325 -0.466 -0.360 -1.626 2.266 -4.652 7 B_DOC13:DG841_C B 13 ? C 841 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 12 1_555 C DT 11 1_555 B DG 13 1_555 C DC 10 1_555 0.491 -0.669 3.224 -2.112 -2.085 32.428 -0.835 -1.239 3.222 -3.723 3.771 32.560 1 BB_DA7DG8:DC846DT847_CC B 7 ? C 847 ? B 8 ? C 846 ? 1 B DG 13 1_555 C DC 10 1_555 B DG 14 1_555 C DC 9 1_555 0.395 -0.652 3.593 2.494 -0.384 35.351 -1.009 -0.245 3.618 -0.631 -4.100 35.438 2 BB_DG8DG9:DC845DC846_CC B 8 ? C 846 ? B 9 ? C 845 ? 1 B DG 14 1_555 C DC 9 1_555 B DA 15 1_555 C DT 8 1_555 -0.345 -0.563 3.236 -2.647 2.199 31.322 -1.441 0.148 3.207 4.058 4.884 31.505 3 BB_DG9DA10:DT844DC845_CC B 9 ? C 845 ? B 10 ? C 844 ? 1 B DA 15 1_555 C DT 8 1_555 B DC 16 1_555 C DG 7 1_555 0.393 -1.190 3.158 -0.048 1.653 33.770 -2.303 -0.683 3.097 2.844 0.083 33.809 4 BB_DA10DC11:DG843DT844_CC B 10 ? C 844 ? B 11 ? C 843 ? 1 B DC 16 1_555 C DG 7 1_555 B DC 17 1_555 C DG 6 1_555 -0.637 -1.659 3.469 -1.965 8.470 32.830 -4.208 0.774 2.992 14.669 3.402 33.931 5 BB_DC11DC12:DG842DG843_CC B 11 ? C 843 ? B 12 ? C 842 ? 1 B DC 17 1_555 C DG 6 1_555 B DOC 18 1_555 C DG 5 1_555 -0.755 -1.730 3.651 4.263 6.397 17.761 -8.341 4.375 2.623 19.573 -13.043 19.341 6 BB_DC12DOC13:DG841DG842_CC B 12 ? C 842 ? B 13 ? C 841 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 'PHOSPHATE ION' PO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2ALZ _pdbx_initial_refinement_model.details '2ALZ minus DNA' #