HEADER TRANSLATION 01-OCT-08 3ER0 TITLE CRYSTAL STRUCTURE OF THE FULL LENGTH EIF5A FROM SACCHAROMYCES TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 5A-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EIF-5A-2, EIF-4D, HYPUSINE-CONTAINING PROTEIN HP2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HYP2, TIF51A, YEL034W, SYGP-ORF21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TRANSLATION INITIATION FACTOR, YEAST, LOW RESOLUTION, ACETYLATION, KEYWDS 2 HYPUSINE, INITIATION FACTOR, PHOSPHOPROTEIN, PROTEIN BIOSYNTHESIS, KEYWDS 3 TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR M.SANCHES,C.A.O.DIAS,L.H.APONI,S.R.VALENTINI,B.GUIMARAES REVDAT 2 06-SEP-23 3ER0 1 SEQADV REVDAT 1 02-DEC-08 3ER0 0 JRNL AUTH M.SANCHES,C.A.O.DIAS,L.H.APONI,S.R.VALENTINI,B.GUIMARAES JRNL TITL CRYSTAL STRUCTURE OF THE FULL LENGTH EIF5A FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 4815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.392 REMARK 3 R VALUE (WORKING SET) : 0.386 REMARK 3 FREE R VALUE : 0.448 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 528 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 331 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 74.576 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.839 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.744 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2132 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2865 ; 2.149 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ;22.006 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;43.068 ;26.047 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;22.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.864 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.169 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1545 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1262 ; 0.297 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1403 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.323 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.421 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1407 ; 0.135 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2210 ; 0.229 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 787 ; 0.287 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 655 ; 0.457 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 17 A 151 1 REMARK 3 1 B 17 B 151 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1001 ; 0.08 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1001 ; 0.09 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ER0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.427 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5431 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.350 REMARK 200 RESOLUTION RANGE LOW (A) : 49.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 30% PEG400, 0.1M MGCL2, 3% REMARK 280 GLICEROL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 226.52667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.26333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 169.89500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.63167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 283.15833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 226.52667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.26333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 56.63167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 169.89500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 283.15833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ARG A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 HIS A 6 REMARK 465 THR A 7 REMARK 465 PHE A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 ALA A 11 REMARK 465 MET B -9 REMARK 465 ARG B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 465 HIS B 6 REMARK 465 THR B 7 REMARK 465 PHE B 8 REMARK 465 GLU B 9 REMARK 465 THR B 10 REMARK 465 ALA B 11 REMARK 465 ASP B 12 REMARK 465 ALA B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 HIS B 52 REMARK 465 GLY B 53 REMARK 465 HIS B 54 REMARK 465 ALA B 55 REMARK 465 GLU B 152 REMARK 465 ALA B 153 REMARK 465 ALA B 154 REMARK 465 ARG B 155 REMARK 465 THR B 156 REMARK 465 ASP B 157 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 124 CB ALA A 127 2.05 REMARK 500 OD2 ASP B 63 OG1 THR B 66 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 76 OE1 GLU B 119 10455 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 152 CB GLU A 152 CG 0.116 REMARK 500 GLU A 152 CG GLU A 152 CD 0.103 REMARK 500 GLU A 152 CD GLU A 152 OE1 0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 20 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 PRO A 20 C - N - CD ANGL. DEV. = -12.8 DEGREES REMARK 500 PHE A 128 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 GLU A 152 OE1 - CD - OE2 ANGL. DEV. = -12.6 DEGREES REMARK 500 GLU A 152 CG - CD - OE2 ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 144.49 -176.51 REMARK 500 SER A 15 -21.47 170.08 REMARK 500 SER A 16 139.91 79.91 REMARK 500 ALA A 17 -111.13 -68.89 REMARK 500 THR A 18 -140.51 -116.71 REMARK 500 PRO A 20 107.89 7.92 REMARK 500 ASN A 29 -16.41 80.06 REMARK 500 THR A 49 133.11 -34.12 REMARK 500 LYS A 51 -158.79 -54.01 REMARK 500 PHE A 65 -86.53 -113.08 REMARK 500 LYS A 68 93.81 -0.62 REMARK 500 HIS A 78 144.98 -33.07 REMARK 500 LEU A 93 -68.52 -122.47 REMARK 500 ILE A 95 -82.39 -74.41 REMARK 500 ASP A 97 -175.68 73.48 REMARK 500 PHE A 99 91.34 -176.41 REMARK 500 LEU A 100 -45.78 156.63 REMARK 500 LEU A 102 -130.75 -71.94 REMARK 500 MET A 103 -160.06 -128.31 REMARK 500 ASN A 104 -152.26 -131.58 REMARK 500 MET A 105 -86.66 -76.28 REMARK 500 ASP A 106 -109.08 58.58 REMARK 500 THR A 109 133.60 163.45 REMARK 500 ASP A 112 -160.01 -78.61 REMARK 500 VAL A 113 144.66 63.67 REMARK 500 LYS A 114 -18.48 -144.78 REMARK 500 PRO A 116 -72.82 -30.33 REMARK 500 GLU A 117 -119.24 84.07 REMARK 500 GLU A 119 -98.53 54.93 REMARK 500 ASP A 122 -70.03 -98.64 REMARK 500 SER A 123 -78.06 1.64 REMARK 500 ALA A 127 -118.50 27.68 REMARK 500 PHE A 128 -70.02 -141.68 REMARK 500 ASP A 129 -22.87 -13.74 REMARK 500 LYS A 132 130.76 4.52 REMARK 500 MET A 142 -79.57 49.89 REMARK 500 ALA A 146 164.08 174.98 REMARK 500 ILE A 148 -64.70 -146.68 REMARK 500 LYS A 151 -153.62 -142.83 REMARK 500 THR A 156 -49.42 -149.13 REMARK 500 THR B 18 -140.77 -118.26 REMARK 500 PRO B 20 127.00 -20.80 REMARK 500 ASN B 29 -16.34 79.34 REMARK 500 PHE B 65 -85.07 -113.51 REMARK 500 LYS B 68 92.53 -2.67 REMARK 500 HIS B 78 143.44 -28.81 REMARK 500 LEU B 93 -69.40 -124.60 REMARK 500 ILE B 95 -79.73 -73.57 REMARK 500 ASP B 97 174.55 71.65 REMARK 500 PHE B 99 104.62 165.83 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 18 TYR A 19 149.78 REMARK 500 TYR A 19 PRO A 20 96.25 REMARK 500 THR A 49 GLY A 50 -120.72 REMARK 500 GLY A 50 LYS A 51 -37.90 REMARK 500 ASP A 97 GLY A 98 35.02 REMARK 500 PHE A 99 LEU A 100 119.04 REMARK 500 SER A 101 LEU A 102 -46.76 REMARK 500 LEU A 102 MET A 103 133.54 REMARK 500 MET A 105 ASP A 106 65.10 REMARK 500 ASP A 106 GLY A 107 -120.11 REMARK 500 ASP A 108 THR A 109 -58.01 REMARK 500 ALA A 115 PRO A 116 118.30 REMARK 500 GLU A 117 GLY A 118 73.86 REMARK 500 GLY A 121 ASP A 122 -139.77 REMARK 500 ASP A 122 SER A 123 123.69 REMARK 500 THR A 126 ALA A 127 86.47 REMARK 500 ALA A 127 PHE A 128 -57.14 REMARK 500 PHE A 128 ASP A 129 122.67 REMARK 500 TYR B 19 PRO B 20 136.76 REMARK 500 GLY B 50 LYS B 51 -127.42 REMARK 500 ASP B 97 GLY B 98 141.06 REMARK 500 PHE B 99 LEU B 100 54.21 REMARK 500 SER B 101 LEU B 102 -113.69 REMARK 500 LEU B 102 MET B 103 78.58 REMARK 500 MET B 105 ASP B 106 124.01 REMARK 500 ASP B 106 GLY B 107 -49.06 REMARK 500 ASP B 108 THR B 109 -118.42 REMARK 500 ALA B 115 PRO B 116 72.69 REMARK 500 GLU B 117 GLY B 118 133.36 REMARK 500 GLY B 121 ASP B 122 -74.33 REMARK 500 ASP B 122 SER B 123 64.96 REMARK 500 THR B 126 ALA B 127 139.78 REMARK 500 ALA B 127 PHE B 128 -59.20 REMARK 500 PHE B 128 ASP B 129 55.30 REMARK 500 GLY B 131 LYS B 132 142.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 3ER0 A 1 157 UNP P23301 IF5A2_YEAST 1 157 DBREF 3ER0 B 1 157 UNP P23301 IF5A2_YEAST 1 157 SEQADV 3ER0 MET A -9 UNP P23301 EXPRESSION TAG SEQADV 3ER0 ARG A -8 UNP P23301 EXPRESSION TAG SEQADV 3ER0 GLY A -7 UNP P23301 EXPRESSION TAG SEQADV 3ER0 SER A -6 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS A -5 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS A -4 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS A -3 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS A -2 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS A -1 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS A 0 UNP P23301 EXPRESSION TAG SEQADV 3ER0 MET B -9 UNP P23301 EXPRESSION TAG SEQADV 3ER0 ARG B -8 UNP P23301 EXPRESSION TAG SEQADV 3ER0 GLY B -7 UNP P23301 EXPRESSION TAG SEQADV 3ER0 SER B -6 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS B -5 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS B -4 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS B -3 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS B -2 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS B -1 UNP P23301 EXPRESSION TAG SEQADV 3ER0 HIS B 0 UNP P23301 EXPRESSION TAG SEQRES 1 A 167 MET ARG GLY SER HIS HIS HIS HIS HIS HIS MET SER ASP SEQRES 2 A 167 GLU GLU HIS THR PHE GLU THR ALA ASP ALA GLY SER SER SEQRES 3 A 167 ALA THR TYR PRO MET GLN CYS SER ALA LEU ARG LYS ASN SEQRES 4 A 167 GLY PHE VAL VAL ILE LYS SER ARG PRO CYS LYS ILE VAL SEQRES 5 A 167 ASP MET SER THR SER LYS THR GLY LYS HIS GLY HIS ALA SEQRES 6 A 167 LYS VAL HIS LEU VAL ALA ILE ASP ILE PHE THR GLY LYS SEQRES 7 A 167 LYS LEU GLU ASP LEU SER PRO SER THR HIS ASN MET GLU SEQRES 8 A 167 VAL PRO VAL VAL LYS ARG ASN GLU TYR GLN LEU LEU ASP SEQRES 9 A 167 ILE ASP ASP GLY PHE LEU SER LEU MET ASN MET ASP GLY SEQRES 10 A 167 ASP THR LYS ASP ASP VAL LYS ALA PRO GLU GLY GLU LEU SEQRES 11 A 167 GLY ASP SER LEU GLN THR ALA PHE ASP GLU GLY LYS ASP SEQRES 12 A 167 LEU MET VAL THR ILE ILE SER ALA MET GLY GLU GLU ALA SEQRES 13 A 167 ALA ILE SER PHE LYS GLU ALA ALA ARG THR ASP SEQRES 1 B 167 MET ARG GLY SER HIS HIS HIS HIS HIS HIS MET SER ASP SEQRES 2 B 167 GLU GLU HIS THR PHE GLU THR ALA ASP ALA GLY SER SER SEQRES 3 B 167 ALA THR TYR PRO MET GLN CYS SER ALA LEU ARG LYS ASN SEQRES 4 B 167 GLY PHE VAL VAL ILE LYS SER ARG PRO CYS LYS ILE VAL SEQRES 5 B 167 ASP MET SER THR SER LYS THR GLY LYS HIS GLY HIS ALA SEQRES 6 B 167 LYS VAL HIS LEU VAL ALA ILE ASP ILE PHE THR GLY LYS SEQRES 7 B 167 LYS LEU GLU ASP LEU SER PRO SER THR HIS ASN MET GLU SEQRES 8 B 167 VAL PRO VAL VAL LYS ARG ASN GLU TYR GLN LEU LEU ASP SEQRES 9 B 167 ILE ASP ASP GLY PHE LEU SER LEU MET ASN MET ASP GLY SEQRES 10 B 167 ASP THR LYS ASP ASP VAL LYS ALA PRO GLU GLY GLU LEU SEQRES 11 B 167 GLY ASP SER LEU GLN THR ALA PHE ASP GLU GLY LYS ASP SEQRES 12 B 167 LEU MET VAL THR ILE ILE SER ALA MET GLY GLU GLU ALA SEQRES 13 B 167 ALA ILE SER PHE LYS GLU ALA ALA ARG THR ASP HELIX 1 1 GLU A 119 ALA A 127 1 9 HELIX 2 2 GLU B 119 ALA B 127 1 9 SHEET 1 A 2 TYR A 19 GLN A 22 0 SHEET 2 A 2 ASN A 79 VAL A 82 -1 O VAL A 82 N TYR A 19 SHEET 1 B 4 PHE A 31 ILE A 34 0 SHEET 2 B 4 ARG A 37 SER A 47 -1 O CYS A 39 N VAL A 32 SHEET 3 B 4 LYS A 56 ASP A 63 -1 O ILE A 62 N LYS A 40 SHEET 4 B 4 LEU A 70 PRO A 75 -1 O LEU A 70 N ALA A 61 SHEET 1 C 3 ARG A 87 GLN A 91 0 SHEET 2 C 3 MET A 135 ALA A 141 -1 O VAL A 136 N TYR A 90 SHEET 3 C 3 GLU A 144 PHE A 150 -1 O ALA A 146 N ILE A 139 SHEET 1 D 2 TYR B 19 GLN B 22 0 SHEET 2 D 2 ASN B 79 VAL B 82 -1 O VAL B 82 N TYR B 19 SHEET 1 E 4 PHE B 31 VAL B 33 0 SHEET 2 E 4 PRO B 38 THR B 46 -1 O CYS B 39 N VAL B 32 SHEET 3 E 4 VAL B 57 ASP B 63 -1 O ILE B 62 N LYS B 40 SHEET 4 E 4 LEU B 70 SER B 74 -1 O LEU B 70 N ALA B 61 SHEET 1 F 3 ARG B 87 GLN B 91 0 SHEET 2 F 3 MET B 135 ALA B 141 -1 O VAL B 136 N TYR B 90 SHEET 3 F 3 GLU B 144 PHE B 150 -1 O ALA B 146 N ILE B 139 CISPEP 1 GLY A 14 SER A 15 0 -10.67 CISPEP 2 SER A 16 ALA A 17 0 9.05 CISPEP 3 ALA A 17 THR A 18 0 -12.68 CISPEP 4 HIS A 52 GLY A 53 0 -6.63 CISPEP 5 ILE A 95 ASP A 96 0 9.72 CISPEP 6 ASP A 96 ASP A 97 0 3.97 CISPEP 7 GLY A 98 PHE A 99 0 -15.71 CISPEP 8 LEU A 100 SER A 101 0 3.60 CISPEP 9 THR A 109 LYS A 110 0 17.06 CISPEP 10 GLY A 118 GLU A 119 0 3.26 CISPEP 11 ALA B 17 THR B 18 0 -11.30 CISPEP 12 THR B 49 GLY B 50 0 -12.54 CISPEP 13 ILE B 95 ASP B 96 0 5.35 CISPEP 14 ASP B 96 ASP B 97 0 -2.55 CISPEP 15 GLY B 98 PHE B 99 0 -7.17 CISPEP 16 LEU B 100 SER B 101 0 3.73 CISPEP 17 THR B 109 LYS B 110 0 15.44 CISPEP 18 GLY B 118 GLU B 119 0 1.11 CISPEP 19 GLU B 130 GLY B 131 0 -10.54 CRYST1 59.664 59.664 339.790 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016761 0.009677 0.000000 0.00000 SCALE2 0.000000 0.019353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002943 0.00000