HEADER SIGNALING PROTEIN 13-OCT-08 3EVU
TITLE CRYSTAL STRUCTURE OF CALCIUM BOUND DIMERIC GCAMP2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MYOSIN LIGHT CHAIN KINASE, GREEN FLUORESCENT PROTEIN,
COMPND 3 CALMODULIN-1 CHIMERA;
COMPND 4 CHAIN: A;
COMPND 5 FRAGMENT: UNP P11799 RESIDUES 1731-1749, UNP P42212 RESIDUES 2-
COMPND 6 144/147-238, UNP P0DP29 RESIDUES 3-238;
COMPND 7 SYNONYM: MLCK,TELOKIN;
COMPND 8 EC: 2.7.11.18;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, GALLUS GALLUS, RATTUS
SOURCE 3 NORVEGICUS;
SOURCE 4 ORGANISM_COMMON: JELLYFISH, CHICKEN, RAT;
SOURCE 5 ORGANISM_TAXID: 6100, 9031, 10116;
SOURCE 6 GENE: MYLK, GFP, CALM1, CALM, CAM, CAM1, CAMI;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21
KEYWDS GCAMP2, CALCIUM SENSOR, GFP, CALMODULIN, M13, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Q.WANG,B.SHUI,M.I.KOTLIKOFF,H.SONDERMANN
REVDAT 5 20-NOV-24 3EVU 1 REMARK
REVDAT 4 27-DEC-23 3EVU 1 REMARK LINK
REVDAT 3 26-JUL-17 3EVU 1 TITLE COMPND SOURCE REMARK
REVDAT 3 2 1 DBREF SEQADV
REVDAT 2 30-DEC-08 3EVU 1 JRNL
REVDAT 1 09-DEC-08 3EVU 0
JRNL AUTH Q.WANG,B.SHUI,M.I.KOTLIKOFF,H.SONDERMANN
JRNL TITL STRUCTURAL BASIS FOR CALCIUM SENSING BY GCAMP2.
JRNL REF STRUCTURE V. 16 1817 2008
JRNL REFN ISSN 0969-2126
JRNL PMID 19081058
JRNL DOI 10.1016/J.STR.2008.10.008
REMARK 2
REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.53
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.150
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3
REMARK 3 NUMBER OF REFLECTIONS : 40536
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.164
REMARK 3 R VALUE (WORKING SET) : 0.161
REMARK 3 FREE R VALUE : 0.197
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050
REMARK 3 FREE R VALUE TEST SET COUNT : 4075
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 42.5370 - 5.3700 0.99 1349 152 0.2050 0.2060
REMARK 3 2 5.3700 - 4.2640 1.00 1314 149 0.1420 0.1540
REMARK 3 3 4.2640 - 3.7250 1.00 1312 149 0.1310 0.1430
REMARK 3 4 3.7250 - 3.3850 1.00 1309 129 0.1480 0.2080
REMARK 3 5 3.3850 - 3.1420 1.00 1306 147 0.1600 0.1970
REMARK 3 6 3.1420 - 2.9570 1.00 1281 142 0.1660 0.1920
REMARK 3 7 2.9570 - 2.8090 0.99 1295 144 0.1690 0.2040
REMARK 3 8 2.8090 - 2.6870 0.99 1303 127 0.1620 0.2160
REMARK 3 9 2.6870 - 2.5830 1.00 1311 121 0.1690 0.2180
REMARK 3 10 2.5830 - 2.4940 0.99 1289 136 0.1620 0.2080
REMARK 3 11 2.4940 - 2.4160 0.99 1297 141 0.1710 0.2100
REMARK 3 12 2.4160 - 2.3470 0.99 1246 156 0.1620 0.2380
REMARK 3 13 2.3470 - 2.2850 0.99 1277 151 0.1560 0.2160
REMARK 3 14 2.2850 - 2.2290 0.99 1261 149 0.1570 0.1850
REMARK 3 15 2.2290 - 2.1790 0.99 1258 150 0.1490 0.1940
REMARK 3 16 2.1790 - 2.1320 0.98 1249 144 0.1460 0.1900
REMARK 3 17 2.1320 - 2.0900 0.99 1279 147 0.1570 0.2010
REMARK 3 18 2.0900 - 2.0500 0.98 1254 133 0.1400 0.2100
REMARK 3 19 2.0500 - 2.0140 0.98 1270 148 0.1420 0.1700
REMARK 3 20 2.0140 - 1.9800 0.98 1267 146 0.1410 0.2070
REMARK 3 21 1.9800 - 1.9480 0.97 1193 144 0.1340 0.2080
REMARK 3 22 1.9480 - 1.9180 0.96 1275 129 0.1390 0.1970
REMARK 3 23 1.9180 - 1.8890 0.97 1199 146 0.1480 0.1740
REMARK 3 24 1.8890 - 1.8630 0.96 1275 139 0.1490 0.2090
REMARK 3 25 1.8630 - 1.8380 0.94 1171 150 0.1530 0.2420
REMARK 3 26 1.8380 - 1.8140 0.94 1245 125 0.1530 0.1710
REMARK 3 27 1.8140 - 1.7910 0.93 1169 127 0.1630 0.2140
REMARK 3 28 1.7910 - 1.7700 0.93 1224 135 0.1680 0.2460
REMARK 3 29 1.7700 - 1.7500 0.79 983 119 0.1780 0.2090
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : 0.37
REMARK 3 B_SOL : 65.70
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.04
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.84700
REMARK 3 B22 (A**2) : 4.13400
REMARK 3 B33 (A**2) : -2.28800
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.37000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 3222
REMARK 3 ANGLE : 1.144 4350
REMARK 3 CHIRALITY : 0.078 479
REMARK 3 PLANARITY : 0.004 570
REMARK 3 DIHEDRAL : 16.280 1207
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: (CHAIN A AND RESID 39:59)
REMARK 3 ORIGIN FOR THE GROUP (A): -23.7122 -7.5552 45.3149
REMARK 3 T TENSOR
REMARK 3 T11: 0.1208 T22: 0.1912
REMARK 3 T33: 0.1849 T12: 0.0211
REMARK 3 T13: -0.0295 T23: 0.0040
REMARK 3 L TENSOR
REMARK 3 L11: 0.0525 L22: 0.0617
REMARK 3 L33: -0.0241 L12: -0.0471
REMARK 3 L13: 0.0258 L23: -0.0544
REMARK 3 S TENSOR
REMARK 3 S11: -0.0524 S12: -0.0198 S13: 0.1284
REMARK 3 S21: -0.0510 S22: 0.0682 S23: -0.1445
REMARK 3 S31: -0.0705 S32: 0.0583 S33: -0.0009
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: (CHAIN A AND RESID 60:301)
REMARK 3 ORIGIN FOR THE GROUP (A): -18.8223 -17.6041 11.0298
REMARK 3 T TENSOR
REMARK 3 T11: 0.0798 T22: 0.0512
REMARK 3 T33: 0.0671 T12: -0.0105
REMARK 3 T13: -0.0025 T23: 0.0013
REMARK 3 L TENSOR
REMARK 3 L11: 1.0635 L22: 0.5584
REMARK 3 L33: 0.8500 L12: -0.2034
REMARK 3 L13: -0.3254 L23: -0.0556
REMARK 3 S TENSOR
REMARK 3 S11: 0.0350 S12: -0.0000 S13: -0.0233
REMARK 3 S21: 0.0005 S22: -0.0336 S23: 0.0010
REMARK 3 S31: -0.0525 S32: 0.0274 S33: -0.0003
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: (CHAIN A AND RESID 302:450)
REMARK 3 ORIGIN FOR THE GROUP (A): 12.3870 -10.0109 24.5873
REMARK 3 T TENSOR
REMARK 3 T11: 0.1206 T22: 0.1680
REMARK 3 T33: 0.1371 T12: -0.0139
REMARK 3 T13: -0.0136 T23: -0.0071
REMARK 3 L TENSOR
REMARK 3 L11: 0.4479 L22: 0.7095
REMARK 3 L33: 0.3060 L12: 0.5140
REMARK 3 L13: -0.0195 L23: 0.2315
REMARK 3 S TENSOR
REMARK 3 S11: 0.0335 S12: -0.0758 S13: 0.0872
REMARK 3 S21: 0.0229 S22: -0.0561 S23: 0.1269
REMARK 3 S31: -0.0214 S32: -0.0424 S33: 0.0000
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3EVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-08.
REMARK 100 THE DEPOSITION ID IS D_1000049830.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-JUN-07
REMARK 200 TEMPERATURE (KELVIN) : NULL
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 5
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : CHESS
REMARK 200 BEAMLINE : A1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41444
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 4.600
REMARK 200 R MERGE (I) : 0.04000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.4890
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 4.30
REMARK 200 R MERGE FOR SHELL (I) : 0.23900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 39.77
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.96800
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.65500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.96800
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.65500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7280 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 36740 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -12.93019
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.43112
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 225 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 475 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 499 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ARG A 2
REMARK 465 GLY A 3
REMARK 465 SER A 4
REMARK 465 HIS A 5
REMARK 465 HIS A 6
REMARK 465 HIS A 7
REMARK 465 HIS A 8
REMARK 465 HIS A 9
REMARK 465 HIS A 10
REMARK 465 GLY A 11
REMARK 465 MET A 12
REMARK 465 ALA A 13
REMARK 465 SER A 14
REMARK 465 MET A 15
REMARK 465 THR A 16
REMARK 465 GLY A 17
REMARK 465 GLY A 18
REMARK 465 GLN A 19
REMARK 465 GLN A 20
REMARK 465 MET A 21
REMARK 465 GLY A 22
REMARK 465 ARG A 23
REMARK 465 ASP A 24
REMARK 465 LEU A 25
REMARK 465 TYR A 26
REMARK 465 ASP A 27
REMARK 465 ASP A 28
REMARK 465 ASP A 29
REMARK 465 ASP A 30
REMARK 465 LYS A 31
REMARK 465 ASP A 32
REMARK 465 LEU A 33
REMARK 465 ALA A 34
REMARK 465 THR A 35
REMARK 465 MET A 36
REMARK 465 VAL A 37
REMARK 465 ASP A 38
REMARK 465 ASP A 147
REMARK 465 GLU A 148
REMARK 465 LEU A 149
REMARK 465 TYR A 150
REMARK 465 LYS A 151
REMARK 465 GLY A 152
REMARK 465 GLY A 153
REMARK 465 THR A 154
REMARK 465 GLY A 155
REMARK 465 GLY A 156
REMARK 465 SER A 157
REMARK 465 MET A 158
REMARK 465 VAL A 159
REMARK 465 ARG A 304
REMARK 465 ASP A 305
REMARK 465 GLN A 306
REMARK 465 LYS A 451
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 144 102.49 -55.68
REMARK 500 ASN A 302 68.83 -67.42
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 471 DISTANCE = 6.12 ANGSTROMS
REMARK 525 HOH A 499 DISTANCE = 5.88 ANGSTROMS
REMARK 525 HOH A 532 DISTANCE = 5.90 ANGSTROMS
REMARK 525 HOH A 834 DISTANCE = 7.89 ANGSTROMS
REMARK 525 HOH A 847 DISTANCE = 6.82 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 508 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 323 OD1
REMARK 620 2 ASP A 325 OD1 82.8
REMARK 620 3 ASP A 327 OD1 86.6 79.8
REMARK 620 4 THR A 329 O 83.2 158.6 83.2
REMARK 620 5 GLU A 334 OE1 105.7 123.3 154.5 76.3
REMARK 620 6 GLU A 334 OE2 97.9 73.7 152.3 124.4 49.7
REMARK 620 7 HOH A 545 O 164.2 82.0 86.4 109.9 86.5 82.1
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 507 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 359 OD1
REMARK 620 2 ASP A 361 OD1 78.1
REMARK 620 3 ASN A 363 OD1 87.0 74.2
REMARK 620 4 THR A 365 O 86.9 152.4 82.0
REMARK 620 5 GLU A 370 OE1 110.4 125.9 154.8 81.0
REMARK 620 6 GLU A 370 OE2 88.7 79.7 153.9 123.5 48.6
REMARK 620 7 HOH A 608 O 158.4 80.3 87.3 112.8 82.3 87.2
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 505 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 396 OD2
REMARK 620 2 ASP A 398 OD2 87.6
REMARK 620 3 ASN A 400 OD1 84.3 76.7
REMARK 620 4 TYR A 402 O 84.0 155.0 79.0
REMARK 620 5 GLU A 407 OE1 99.0 75.8 152.2 128.8
REMARK 620 6 GLU A 407 OE2 101.5 126.9 155.4 77.9 51.2
REMARK 620 7 HOH A 590 O 165.7 97.9 84.2 85.6 95.2 85.8
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 506 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 432 OD1
REMARK 620 2 ASP A 434 OD2 82.5
REMARK 620 3 ASP A 436 OD1 87.1 78.6
REMARK 620 4 GLN A 438 O 85.0 154.8 78.9
REMARK 620 5 GLU A 443 OE1 108.8 123.3 153.6 81.5
REMARK 620 6 GLU A 443 OE2 91.9 75.5 154.0 126.9 49.5
REMARK 620 7 HOH A 537 O 163.1 85.7 78.7 100.9 87.8 96.9
REMARK 620 N 1 2 3 4 5 6
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 507
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 508
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3EVP RELATED DB: PDB
REMARK 900 RELATED ID: 3EVR RELATED DB: PDB
REMARK 900 RELATED ID: 3EVV RELATED DB: PDB
DBREF 3EVU A 1 40 PDB 3EVU 3EVU 1 40
DBREF 3EVU A 41 59 UNP P11799 MYLK_CHICK 1731 1749
DBREF 3EVU A 60 151 UNP P42212 GFP_AEQVI 147 238
DBREF 3EVU A 160 302 UNP P42212 GFP_AEQVI 2 144
DBREF 3EVU A 305 450 UNP P0DP29 CALM1_RAT 3 148
SEQADV 3EVU ASN A 45 UNP P11799 GLN 1735 CONFLICT
SEQADV 3EVU LEU A 60 UNP P42212 SER 147 CONFLICT
SEQADV 3EVU GLU A 61 UNP P42212 HIS 148 CONFLICT
SEQADV 3EVU ALA A 76 UNP P42212 VAL 163 CONFLICT
SEQADV 3EVU GLY A 88 UNP P42212 SER 175 CONFLICT
SEQADV 3EVU TYR A 93 UNP P42212 ASP 180 CONFLICT
SEQADV 3EVU LYS A 119 UNP P42212 ALA 206 CONFLICT
SEQADV 3EVU LEU A 144 UNP P42212 HIS 231 CONFLICT
SEQADV 3EVU GLY A 152 UNP P42212 LINKER
SEQADV 3EVU GLY A 153 UNP P42212 LINKER
SEQADV 3EVU THR A 154 UNP P42212 LINKER
SEQADV 3EVU GLY A 155 UNP P42212 LINKER
SEQADV 3EVU GLY A 156 UNP P42212 LINKER
SEQADV 3EVU SER A 157 UNP P42212 LINKER
SEQADV 3EVU MET A 158 UNP P42212 LINKER
SEQADV 3EVU VAL A 159 UNP P42212 LINKER
SEQADV 3EVU LEU A 222 UNP P42212 PHE 64 CONFLICT
SEQADV 3EVU A UNP P42212 SER 65 DELETION
SEQADV 3EVU CRO A 224 UNP P42212 TYR 66 CHROMOPHORE
SEQADV 3EVU A UNP P42212 GLY 67 DELETION
SEQADV 3EVU ILE A 251 UNP P42212 VAL 93 CONFLICT
SEQADV 3EVU THR A 303 UNP P42212 LINKER
SEQADV 3EVU ARG A 304 UNP P42212 LINKER
SEQADV 3EVU LYS A 451 UNP P0DP29 EXPRESSION TAG
SEQRES 1 A 449 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA
SEQRES 2 A 449 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR
SEQRES 3 A 449 ASP ASP ASP ASP LYS ASP LEU ALA THR MET VAL ASP SER
SEQRES 4 A 449 SER ARG ARG LYS TRP ASN LYS THR GLY HIS ALA VAL ARG
SEQRES 5 A 449 ALA ILE GLY ARG LEU SER SER LEU GLU ASN VAL TYR ILE
SEQRES 6 A 449 MET ALA ASP LYS GLN LYS ASN GLY ILE LYS ALA ASN PHE
SEQRES 7 A 449 LYS ILE ARG HIS ASN ILE GLU ASP GLY GLY VAL GLN LEU
SEQRES 8 A 449 ALA TYR HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY
SEQRES 9 A 449 PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN
SEQRES 10 A 449 SER LYS LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS
SEQRES 11 A 449 MET VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR
SEQRES 12 A 449 LEU GLY MET ASP GLU LEU TYR LYS GLY GLY THR GLY GLY
SEQRES 13 A 449 SER MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY VAL
SEQRES 14 A 449 VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY
SEQRES 15 A 449 HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA
SEQRES 16 A 449 THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR
SEQRES 17 A 449 GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR
SEQRES 18 A 449 LEU CRO VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET
SEQRES 19 A 449 LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY
SEQRES 20 A 449 TYR ILE GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY
SEQRES 21 A 449 ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP
SEQRES 22 A 449 THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE
SEQRES 23 A 449 LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR
SEQRES 24 A 449 ASN THR ARG ASP GLN LEU THR GLU GLU GLN ILE ALA GLU
SEQRES 25 A 449 PHE LYS GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP
SEQRES 26 A 449 GLY THR ILE THR THR LYS GLU LEU GLY THR VAL MET ARG
SEQRES 27 A 449 SER LEU GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP
SEQRES 28 A 449 MET ILE ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE
SEQRES 29 A 449 ASP PHE PRO GLU PHE LEU THR MET MET ALA ARG LYS MET
SEQRES 30 A 449 LYS ASP THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE
SEQRES 31 A 449 ARG VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA
SEQRES 32 A 449 ALA GLU LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS
SEQRES 33 A 449 LEU THR ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA
SEQRES 34 A 449 ASP ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE
SEQRES 35 A 449 VAL GLN MET MET THR ALA LYS
MODRES 3EVU CRO A 224 TYR CHROMOPHORE
HET CRO A 224 22
HET CA A 505 1
HET CA A 506 1
HET CA A 507 1
HET CA A 508 1
HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-
HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-
HETNAM 3 CRO YL}ACETIC ACID
HETNAM CA CALCIUM ION
HETSYN CRO PEPTIDE DERIVED CHROMOPHORE
FORMUL 1 CRO C15 H17 N3 O5
FORMUL 2 CA 4(CA 2+)
FORMUL 6 HOH *516(H2 O)
HELIX 1 1 SER A 39 SER A 58 1 20
HELIX 2 2 LYS A 69 ASN A 72 5 4
HELIX 3 3 LYS A 161 THR A 167 5 7
HELIX 4 4 ALA A 195 TYR A 197 5 3
HELIX 5 5 PRO A 214 VAL A 219 5 6
HELIX 6 6 VAL A 226 SER A 230 5 5
HELIX 7 7 PRO A 233 HIS A 239 5 7
HELIX 8 8 ASP A 240 ALA A 245 1 6
HELIX 9 9 THR A 308 ASP A 323 1 16
HELIX 10 10 THR A 331 LEU A 342 1 12
HELIX 11 11 THR A 347 ASP A 359 1 13
HELIX 12 12 PHE A 368 ARG A 377 1 10
HELIX 13 13 LYS A 380 ASP A 396 1 17
HELIX 14 14 SER A 404 GLY A 416 1 13
HELIX 15 15 THR A 420 ASP A 432 1 13
HELIX 16 16 TYR A 441 ALA A 450 1 10
SHEET 1 A12 VAL A 63 ASP A 68 0
SHEET 2 A12 GLY A 73 ASN A 83 -1 O GLY A 73 N ASP A 68
SHEET 3 A12 VAL A 89 PRO A 100 -1 O GLN A 90 N HIS A 82
SHEET 4 A12 TYR A 250 PHE A 258 -1 O ILE A 251 N THR A 99
SHEET 5 A12 ASN A 263 GLU A 273 -1 O TYR A 264 N ILE A 256
SHEET 6 A12 THR A 276 ILE A 286 -1 O VAL A 278 N LYS A 271
SHEET 7 A12 VAL A 170 VAL A 180 1 N GLU A 175 O ILE A 281
SHEET 8 A12 HIS A 183 ASP A 194 -1 O PHE A 185 N GLY A 178
SHEET 9 A12 LYS A 199 CYS A 206 -1 O LYS A 199 N ASP A 194
SHEET 10 A12 HIS A 130 ALA A 140 -1 N MET A 131 O PHE A 204
SHEET 11 A12 HIS A 112 SER A 121 -1 N SER A 115 O THR A 138
SHEET 12 A12 VAL A 63 ASP A 68 -1 N ILE A 65 O HIS A 112
SHEET 1 B 2 THR A 329 ILE A 330 0
SHEET 2 B 2 ILE A 366 ASP A 367 -1 O ILE A 366 N ILE A 330
SHEET 1 C 2 TYR A 402 ILE A 403 0
SHEET 2 C 2 VAL A 439 ASN A 440 -1 O VAL A 439 N ILE A 403
LINK C LEU A 222 N1 CRO A 224 1555 1555 1.40
LINK C3 CRO A 224 N VAL A 226 1555 1555 1.40
LINK OD1 ASP A 323 CA CA A 508 1555 1555 2.37
LINK OD1 ASP A 325 CA CA A 508 1555 1555 2.52
LINK OD1 ASP A 327 CA CA A 508 1555 1555 2.45
LINK O THR A 329 CA CA A 508 1555 1555 2.36
LINK OE1 GLU A 334 CA CA A 508 1555 1555 2.59
LINK OE2 GLU A 334 CA CA A 508 1555 1555 2.65
LINK OD1 ASP A 359 CA CA A 507 1555 1555 2.40
LINK OD1 ASP A 361 CA CA A 507 1555 1555 2.58
LINK OD1 ASN A 363 CA CA A 507 1555 1555 2.44
LINK O THR A 365 CA CA A 507 1555 1555 2.47
LINK OE1 GLU A 370 CA CA A 507 1555 1555 2.65
LINK OE2 GLU A 370 CA CA A 507 1555 1555 2.70
LINK OD2 ASP A 396 CA CA A 505 1555 1555 2.33
LINK OD2 ASP A 398 CA CA A 505 1555 1555 2.38
LINK OD1 ASN A 400 CA CA A 505 1555 1555 2.51
LINK O TYR A 402 CA CA A 505 1555 1555 2.37
LINK OE1 GLU A 407 CA CA A 505 1555 1555 2.61
LINK OE2 GLU A 407 CA CA A 505 1555 1555 2.50
LINK OD1 ASP A 432 CA CA A 506 1555 1555 2.37
LINK OD2 ASP A 434 CA CA A 506 1555 1555 2.45
LINK OD1 ASP A 436 CA CA A 506 1555 1555 2.47
LINK O GLN A 438 CA CA A 506 1555 1555 2.43
LINK OE1 GLU A 443 CA CA A 506 1555 1555 2.52
LINK OE2 GLU A 443 CA CA A 506 1555 1555 2.71
LINK CA CA A 505 O HOH A 590 1555 1555 2.55
LINK CA CA A 506 O HOH A 537 1555 1555 2.47
LINK CA CA A 507 O HOH A 608 1555 1555 2.63
LINK CA CA A 508 O HOH A 545 1555 1555 2.46
CISPEP 1 MET A 246 PRO A 247 0 7.36
SITE 1 AC1 6 ASP A 396 ASP A 398 ASN A 400 TYR A 402
SITE 2 AC1 6 GLU A 407 HOH A 590
SITE 1 AC2 6 ASP A 432 ASP A 434 ASP A 436 GLN A 438
SITE 2 AC2 6 GLU A 443 HOH A 537
SITE 1 AC3 6 ASP A 359 ASP A 361 ASN A 363 THR A 365
SITE 2 AC3 6 GLU A 370 HOH A 608
SITE 1 AC4 6 ASP A 323 ASP A 325 ASP A 327 THR A 329
SITE 2 AC4 6 GLU A 334 HOH A 545
CRYST1 127.936 47.310 69.642 90.00 100.70 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007816 0.000000 0.001477 0.00000
SCALE2 0.000000 0.021137 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014613 0.00000