HEADER TRANSFERASE 15-OCT-08 3EWI TITLE STRUCTURAL ANALYSIS OF THE C-TERMINAL DOMAIN OF MURINE CMP-SIALIC ACID TITLE 2 SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACYLNEURAMINATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: CMP-N-ACETYLNEURAMINIC ACID SYNTHETASE, CMP-NEUNAC COMPND 6 SYNTHETASE; COMPND 7 EC: 2.7.7.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS BETA BARREL, HAD-LIKE, ROSSMANNOID FOLD, NUCLEOTIDYLTRANSFERASE, KEYWDS 2 NUCLEUS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.OSCHLIES,A.DICKMANNS,K.STUMMEYER,R.GERARDY-SCHAHN,R.FICNER, AUTHOR 2 A.K.MUENSTER-KUEHNEL REVDAT 4 27-DEC-23 3EWI 1 SEQADV REVDAT 3 25-OCT-17 3EWI 1 REMARK REVDAT 2 13-OCT-09 3EWI 1 JRNL REVDAT 1 18-AUG-09 3EWI 0 JRNL AUTH M.OSCHLIES,A.DICKMANNS,T.HASELHORST,W.SCHAPER,K.STUMMEYER, JRNL AUTH 2 J.TIRALONGO,B.WEINHOLD,R.GERARDY-SCHAHN,M.VON ITZSTEIN, JRNL AUTH 3 R.FICNER,A.K.MUNSTER-KUHNEL JRNL TITL A C-TERMINAL PHOSPHATASE MODULE CONSERVED IN VERTEBRATE JRNL TITL 2 CMP-SIALIC ACID SYNTHETASES PROVIDES A TETRAMERIZATION JRNL TITL 3 INTERFACE FOR THE PHYSIOLOGICALLY ACTIVE ENZYME. JRNL REF J.MOL.BIOL. V. 393 83 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19666032 JRNL DOI 10.1016/J.JMB.2009.08.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 24429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1112 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.363 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2430 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3280 ; 1.304 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 6.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;35.980 ;25.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;15.789 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.499 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1769 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1305 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1691 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 184 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 163 6 REMARK 3 1 B 7 B 163 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1131 ; 0.930 ; 5.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-07; 01-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; BESSY REMARK 200 BEAMLINE : 14.2; 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184; 0.9797, 0.9799, 0.9117 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 CHANNEL; REMARK 200 DOUBLE CRYSTAL SI 111 CHANNEL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; MARMOSAIC 225 MM REMARK 200 CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : 0.04200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.6360 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : 0.25200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ETOH, TRIS, DTT, NEU5AC, PH 8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K. ETOH, TRIS, DTT, REMARK 280 NEU5AC, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.54500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.54500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.16270 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.67003 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 ASN A 164 REMARK 465 SER A 165 REMARK 465 CYS A 166 REMARK 465 GLN A 167 REMARK 465 LYS A 168 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 LYS B 7 REMARK 465 CYS B 166 REMARK 465 GLN B 167 REMARK 465 LYS B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 LYS A 100 CE NZ REMARK 470 GLU A 113 CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 VAL A 162 CG1 CG2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LEU B 68 CG CD1 CD2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 28 OE1 GLN A 31 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 89 C ASP B 89 O 0.123 REMARK 500 GLY B 96 C GLY B 96 O 0.189 REMARK 500 LEU B 97 C LEU B 97 O 0.124 REMARK 500 GLU B 101 CD GLU B 101 OE1 0.071 REMARK 500 GLU B 101 CD GLU B 101 OE2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 19 -69.63 -129.08 REMARK 500 CYS A 19 -71.26 -128.35 REMARK 500 SER A 28 -53.23 -139.14 REMARK 500 ASP A 30 40.94 -77.62 REMARK 500 ASN A 107 -45.96 -146.94 REMARK 500 SER B 64 132.52 -38.98 REMARK 500 ASN B 107 -19.47 -145.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 31 LYS A 32 142.99 REMARK 500 GLU B 8 ILE B 9 143.57 REMARK 500 GLN B 66 THR B 67 149.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QWJ RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF THE SAME PROTEIN DBREF 3EWI A 3 168 UNP Q99KK2 NEUA_MOUSE 267 432 DBREF 3EWI B 3 168 UNP Q99KK2 NEUA_MOUSE 267 432 SEQADV 3EWI GLY A 1 UNP Q99KK2 EXPRESSION TAG SEQADV 3EWI SER A 2 UNP Q99KK2 EXPRESSION TAG SEQADV 3EWI GLY B 1 UNP Q99KK2 EXPRESSION TAG SEQADV 3EWI SER B 2 UNP Q99KK2 EXPRESSION TAG SEQRES 1 A 168 GLY SER LYS GLU LYS LEU LYS GLU ILE LYS LEU LEU VAL SEQRES 2 A 168 CYS ASN ILE ASP GLY CYS LEU THR ASN GLY HIS ILE TYR SEQRES 3 A 168 VAL SER GLY ASP GLN LYS GLU ILE ILE SER TYR ASP VAL SEQRES 4 A 168 LYS ASP ALA ILE GLY ILE SER LEU LEU LYS LYS SER GLY SEQRES 5 A 168 ILE GLU VAL ARG LEU ILE SER GLU ARG ALA CYS SER LYS SEQRES 6 A 168 GLN THR LEU SER ALA LEU LYS LEU ASP CYS LYS THR GLU SEQRES 7 A 168 VAL SER VAL SER ASP LYS LEU ALA THR VAL ASP GLU TRP SEQRES 8 A 168 ARG LYS GLU MET GLY LEU CYS TRP LYS GLU VAL ALA TYR SEQRES 9 A 168 LEU GLY ASN GLU VAL SER ASP GLU GLU CYS LEU LYS ARG SEQRES 10 A 168 VAL GLY LEU SER ALA VAL PRO ALA ASP ALA CYS SER GLY SEQRES 11 A 168 ALA GLN LYS ALA VAL GLY TYR ILE CYS LYS CYS SER GLY SEQRES 12 A 168 GLY ARG GLY ALA ILE ARG GLU PHE ALA GLU HIS ILE PHE SEQRES 13 A 168 LEU LEU ILE GLU LYS VAL ASN ASN SER CYS GLN LYS SEQRES 1 B 168 GLY SER LYS GLU LYS LEU LYS GLU ILE LYS LEU LEU VAL SEQRES 2 B 168 CYS ASN ILE ASP GLY CYS LEU THR ASN GLY HIS ILE TYR SEQRES 3 B 168 VAL SER GLY ASP GLN LYS GLU ILE ILE SER TYR ASP VAL SEQRES 4 B 168 LYS ASP ALA ILE GLY ILE SER LEU LEU LYS LYS SER GLY SEQRES 5 B 168 ILE GLU VAL ARG LEU ILE SER GLU ARG ALA CYS SER LYS SEQRES 6 B 168 GLN THR LEU SER ALA LEU LYS LEU ASP CYS LYS THR GLU SEQRES 7 B 168 VAL SER VAL SER ASP LYS LEU ALA THR VAL ASP GLU TRP SEQRES 8 B 168 ARG LYS GLU MET GLY LEU CYS TRP LYS GLU VAL ALA TYR SEQRES 9 B 168 LEU GLY ASN GLU VAL SER ASP GLU GLU CYS LEU LYS ARG SEQRES 10 B 168 VAL GLY LEU SER ALA VAL PRO ALA ASP ALA CYS SER GLY SEQRES 11 B 168 ALA GLN LYS ALA VAL GLY TYR ILE CYS LYS CYS SER GLY SEQRES 12 B 168 GLY ARG GLY ALA ILE ARG GLU PHE ALA GLU HIS ILE PHE SEQRES 13 B 168 LEU LEU ILE GLU LYS VAL ASN ASN SER CYS GLN LYS FORMUL 3 HOH *181(H2 O) HELIX 1 1 VAL A 39 SER A 51 1 13 HELIX 2 2 SER A 64 ALA A 70 1 7 HELIX 3 3 ASP A 83 MET A 95 1 13 HELIX 4 4 CYS A 98 LYS A 100 5 3 HELIX 5 5 GLU A 108 SER A 110 5 3 HELIX 6 6 ASP A 111 VAL A 118 1 8 HELIX 7 7 CYS A 128 LYS A 133 1 6 HELIX 8 8 GLY A 146 ASN A 163 1 18 HELIX 9 9 ASP B 38 SER B 51 1 14 HELIX 10 10 LEU B 68 LYS B 72 5 5 HELIX 11 11 ASP B 83 MET B 95 1 13 HELIX 12 12 CYS B 98 LYS B 100 5 3 HELIX 13 13 GLU B 108 SER B 110 5 3 HELIX 14 14 ASP B 111 VAL B 118 1 8 HELIX 15 15 CYS B 128 VAL B 135 1 8 HELIX 16 16 GLY B 146 ASN B 164 1 19 SHEET 1 A 6 THR A 77 GLU A 78 0 SHEET 2 A 6 GLU A 54 ILE A 58 1 N LEU A 57 O GLU A 78 SHEET 3 A 6 LEU A 11 ASN A 15 1 N LEU A 12 O ARG A 56 SHEET 4 A 6 VAL A 102 LEU A 105 1 O ALA A 103 N LEU A 11 SHEET 5 A 6 LEU A 120 VAL A 123 1 O ALA A 122 N TYR A 104 SHEET 6 A 6 TYR A 137 ILE A 138 1 O TYR A 137 N VAL A 123 SHEET 1 B 3 ILE A 34 ASP A 38 0 SHEET 2 B 3 HIS B 24 SER B 28 -1 O VAL B 27 N ILE A 35 SHEET 3 B 3 GLU B 33 ILE B 34 -1 O ILE B 34 N TYR B 26 SHEET 1 C 6 THR B 77 GLU B 78 0 SHEET 2 C 6 GLU B 54 ILE B 58 1 N LEU B 57 O GLU B 78 SHEET 3 C 6 LEU B 11 ASN B 15 1 N CYS B 14 O ILE B 58 SHEET 4 C 6 VAL B 102 LEU B 105 1 O ALA B 103 N LEU B 11 SHEET 5 C 6 LEU B 120 VAL B 123 1 O LEU B 120 N TYR B 104 SHEET 6 C 6 TYR B 137 ILE B 138 1 O TYR B 137 N VAL B 123 CRYST1 121.090 37.490 78.830 90.00 116.30 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008258 0.000000 0.004082 0.00000 SCALE2 0.000000 0.026674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014150 0.00000