HEADER HYDROLASE 16-OCT-08 3EWP TITLE COMPLEX OF SUBSTRATE ADP-RIBOSE WITH IBV NSP3 ADRP DOMAIN CAVEAT 3EWP CHIRALITY ERROR AT CA CENTER(SER B103)/CB CENTER(ILE B133) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NSP3 ADRP DOMAIN; COMPND 5 SYNONYM: NSP3, PAPAIN-LIKE PROTEINASE, PL-PRO, P195; COMPND 6 EC: 3.4.22.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVIAN INFECTIOUS BRONCHITIS VIRUS; SOURCE 3 ORGANISM_COMMON: IBV; SOURCE 4 GENE: 1A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS GLOBULAR LIKE, CYTOPLASM, HYDROLASE, MEMBRANE, METAL-BINDING, KEYWDS 2 PROTEASE, RIBOSOMAL FRAMESHIFTING, RNA-BINDING, THIOL PROTEASE, KEYWDS 3 TRANSMEMBRANE, ZINC, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR Y.XU,L.CONG,C.CHEN,L.WEI,Q.ZHAO,X.XU,Y.MA,M.BARTLAM,Z.RAO REVDAT 2 27-DEC-23 3EWP 1 REMARK SEQADV REVDAT 1 13-JAN-09 3EWP 0 JRNL AUTH Y.XU,L.CONG,C.CHEN,L.WEI,Q.ZHAO,X.XU,Y.MA,M.BARTLAM,Z.RAO JRNL TITL CRYSTAL STRUCTURES OF TWO CORONAVIRUS JRNL TITL 2 ADP-RIBOSE-1''-MONOPHOSPHATASES AND THEIR COMPLEXES WITH JRNL TITL 3 ADP-RIBOSE: A SYSTEMATIC STRUCTURAL ANALYSIS OF THE VIRAL JRNL TITL 4 ADRP DOMAIN. JRNL REF J.VIROL. V. 83 1083 2009 JRNL REFN ISSN 0022-538X JRNL PMID 18987156 JRNL DOI 10.1128/JVI.01862-08 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 19345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : -0.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.249 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2742 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3714 ; 1.916 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 6.882 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;36.871 ;24.495 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;15.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2004 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1398 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1872 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 1.056 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2714 ; 1.612 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1147 ; 2.433 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 3.508 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22223 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.29900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M HEPES PH 7.5, 22% W/V PEG 3350 , VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 VAL B 1 REMARK 465 LYS B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 CYS B 6 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP B 102 REMARK 475 SER B 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 30 NZ LYS B 33 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 139 CD1 ILE B 133 1645 0.61 REMARK 500 NZ LYS A 139 CG1 ILE B 133 1645 0.91 REMARK 500 CE LYS A 139 CD1 ILE B 133 1645 1.85 REMARK 500 CE LYS A 139 CG1 ILE B 133 1645 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 130 -2.43 73.56 REMARK 500 LYS B 33 -43.24 75.36 REMARK 500 SER B 103 -49.52 109.30 REMARK 500 ASN B 104 65.26 135.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 7 LYS B 8 148.32 REMARK 500 GLY B 101 ASP B 102 124.14 REMARK 500 ASP B 102 SER B 103 53.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR B 175 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EWO RELATED DB: PDB REMARK 900 RELATED ID: 3EWQ RELATED DB: PDB REMARK 900 RELATED ID: 3EWR RELATED DB: PDB DBREF 3EWP A 1 174 UNP P0C6V5 R1A_IBVM 1005 1178 DBREF 3EWP B 1 174 UNP P0C6V5 R1A_IBVM 1005 1178 SEQADV 3EWP LEU A -2 UNP P0C6V5 EXPRESSION TAG SEQADV 3EWP GLY A -1 UNP P0C6V5 EXPRESSION TAG SEQADV 3EWP SER A 0 UNP P0C6V5 EXPRESSION TAG SEQADV 3EWP LEU B -2 UNP P0C6V5 EXPRESSION TAG SEQADV 3EWP GLY B -1 UNP P0C6V5 EXPRESSION TAG SEQADV 3EWP SER B 0 UNP P0C6V5 EXPRESSION TAG SEQRES 1 A 177 LEU GLY SER VAL LYS PRO ALA THR CYS GLU LYS PRO LYS SEQRES 2 A 177 PHE LEU GLU TYR LYS THR CYS VAL GLY ASP LEU ALA VAL SEQRES 3 A 177 VAL ILE ALA LYS ALA LEU ASP GLU PHE LYS GLU PHE CYS SEQRES 4 A 177 ILE VAL ASN ALA ALA ASN GLU HIS MET SER HIS GLY GLY SEQRES 5 A 177 GLY VAL ALA LYS ALA ILE ALA ASP PHE CYS GLY PRO ASP SEQRES 6 A 177 PHE VAL GLU TYR CYS ALA ASP TYR VAL LYS LYS HIS GLY SEQRES 7 A 177 PRO GLN GLN LYS LEU VAL THR PRO SER PHE VAL LYS GLY SEQRES 8 A 177 ILE GLN CYS VAL ASN ASN VAL VAL GLY PRO ARG HIS GLY SEQRES 9 A 177 ASP SER ASN LEU ARG GLU LYS LEU VAL ALA ALA TYR LYS SEQRES 10 A 177 SER VAL LEU VAL GLY GLY VAL VAL ASN TYR VAL VAL PRO SEQRES 11 A 177 VAL LEU SER SER GLY ILE PHE GLY VAL ASP PHE LYS ILE SEQRES 12 A 177 SER ILE ASP ALA MET ARG GLU ALA PHE LYS GLY CYS ALA SEQRES 13 A 177 ILE ARG VAL LEU LEU PHE SER LEU SER GLN GLU HIS ILE SEQRES 14 A 177 ASP TYR PHE ASP ALA THR CYS LYS SEQRES 1 B 177 LEU GLY SER VAL LYS PRO ALA THR CYS GLU LYS PRO LYS SEQRES 2 B 177 PHE LEU GLU TYR LYS THR CYS VAL GLY ASP LEU ALA VAL SEQRES 3 B 177 VAL ILE ALA LYS ALA LEU ASP GLU PHE LYS GLU PHE CYS SEQRES 4 B 177 ILE VAL ASN ALA ALA ASN GLU HIS MET SER HIS GLY GLY SEQRES 5 B 177 GLY VAL ALA LYS ALA ILE ALA ASP PHE CYS GLY PRO ASP SEQRES 6 B 177 PHE VAL GLU TYR CYS ALA ASP TYR VAL LYS LYS HIS GLY SEQRES 7 B 177 PRO GLN GLN LYS LEU VAL THR PRO SER PHE VAL LYS GLY SEQRES 8 B 177 ILE GLN CYS VAL ASN ASN VAL VAL GLY PRO ARG HIS GLY SEQRES 9 B 177 ASP SER ASN LEU ARG GLU LYS LEU VAL ALA ALA TYR LYS SEQRES 10 B 177 SER VAL LEU VAL GLY GLY VAL VAL ASN TYR VAL VAL PRO SEQRES 11 B 177 VAL LEU SER SER GLY ILE PHE GLY VAL ASP PHE LYS ILE SEQRES 12 B 177 SER ILE ASP ALA MET ARG GLU ALA PHE LYS GLY CYS ALA SEQRES 13 B 177 ILE ARG VAL LEU LEU PHE SER LEU SER GLN GLU HIS ILE SEQRES 14 B 177 ASP TYR PHE ASP ALA THR CYS LYS HET APR A 175 36 HET APR B 175 36 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 APR 2(C15 H23 N5 O14 P2) FORMUL 5 HOH *200(H2 O) HELIX 1 1 ASP A 20 PHE A 32 1 13 HELIX 2 2 GLY A 49 GLY A 60 1 12 HELIX 3 3 GLY A 60 GLY A 75 1 16 HELIX 4 4 ASN A 104 SER A 115 1 12 HELIX 5 5 ASP A 137 LYS A 150 1 14 HELIX 6 6 SER A 162 CYS A 173 1 12 HELIX 7 7 ASP B 20 LYS B 33 1 14 HELIX 8 8 GLY B 49 GLY B 60 1 12 HELIX 9 9 GLY B 60 GLY B 75 1 16 HELIX 10 10 ASN B 104 SER B 115 1 12 HELIX 11 11 ASP B 137 LYS B 150 1 14 HELIX 12 12 SER B 162 LYS B 174 1 13 SHEET 1 A 6 GLU A 13 VAL A 18 0 SHEET 2 A 6 ARG A 155 SER A 160 1 O VAL A 156 N GLU A 13 SHEET 3 A 6 ASN A 123 PRO A 127 1 N TYR A 124 O LEU A 157 SHEET 4 A 6 PHE A 35 ALA A 40 1 N VAL A 38 O VAL A 125 SHEET 5 A 6 ILE A 89 VAL A 95 1 O VAL A 95 N ASN A 39 SHEET 6 A 6 LYS A 79 THR A 82 -1 N THR A 82 O VAL A 92 SHEET 1 B 6 GLU B 13 VAL B 18 0 SHEET 2 B 6 ARG B 155 SER B 160 1 O VAL B 156 N GLU B 13 SHEET 3 B 6 ASN B 123 PRO B 127 1 N TYR B 124 O ARG B 155 SHEET 4 B 6 PHE B 35 ALA B 41 1 N CYS B 36 O VAL B 125 SHEET 5 B 6 ILE B 89 VAL B 96 1 O VAL B 95 N ASN B 39 SHEET 6 B 6 LYS B 79 THR B 82 -1 N THR B 82 O VAL B 92 SITE 1 AC1 24 GLY A 19 LEU A 21 ALA A 40 ASN A 42 SITE 2 AC1 24 GLY A 49 GLY A 50 VAL A 51 ALA A 52 SITE 3 AC1 24 ALA A 54 VAL A 128 SER A 130 SER A 131 SITE 4 AC1 24 GLY A 132 ILE A 133 PHE A 134 PHE A 159 SITE 5 AC1 24 SER A 160 LEU A 161 HOH A 183 HOH A 193 SITE 6 AC1 24 HOH A 196 HOH A 201 HOH A 223 HOH A 228 SITE 1 AC2 25 LYS A 139 GLY B 19 ASP B 20 LEU B 21 SITE 2 AC2 25 ALA B 40 ASN B 42 SER B 46 GLY B 49 SITE 3 AC2 25 GLY B 50 VAL B 51 ALA B 52 ALA B 54 SITE 4 AC2 25 ARG B 99 VAL B 128 SER B 130 SER B 131 SITE 5 AC2 25 GLY B 132 ILE B 133 PHE B 134 PHE B 159 SITE 6 AC2 25 SER B 160 LEU B 161 HOH B 184 HOH B 202 SITE 7 AC2 25 HOH B 210 CRYST1 41.364 43.985 49.266 78.25 79.45 73.39 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024176 -0.007212 -0.003388 0.00000 SCALE2 0.000000 0.023725 -0.003861 0.00000 SCALE3 0.000000 0.000000 0.020919 0.00000