data_3EY1 # _entry.id 3EY1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EY1 pdb_00003ey1 10.2210/pdb3ey1/pdb NDB PD1213 ? ? RCSB RCSB049909 ? ? WWPDB D_1000049909 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3EY2 . unspecified PDB 3EY3 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EY1 _pdbx_database_status.recvd_initial_deposition_date 2008-10-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Pallan, P.S.' 2 # _citation.id primary _citation.title ;A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution. ; _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_volume 15 _citation.page_first 2017 _citation.page_last 2019 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1359-7345 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19333476 _citation.pdbx_database_id_DOI 10.1039/b822781k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pallan, P.S.' 1 ? primary 'Prakash, T.P.' 2 ? primary 'Li, F.' 3 ? primary 'Eoff, R.L.' 4 ? primary 'Manoharan, M.' 5 ? primary 'Egli, M.' 6 ? # _cell.entry_id 3EY1 _cell.length_a 81.930 _cell.length_b 66.620 _cell.length_c 38.770 _cell.angle_alpha 90.00 _cell.angle_beta 103.30 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EY1 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease H' 15916.004 1 3.1.26.4 D132N 'RNase H domain, UNP residues 59-196' ? 2 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3'" 3727.522 1 ? ? ? ;2'-Thiomethyl uridine (USM) modified decamer nucleic acid 5'-DC DG DC DG DA DA USM USM DC DG DC DG-3' ; 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 103 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; ;AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DG)(DA)(DA)(USM)(USM)(DC)(DG)(DC)(DG)' CGCGAAUUCGCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 GLU n 1 4 GLU n 1 5 ILE n 1 6 ILE n 1 7 TRP n 1 8 GLU n 1 9 SER n 1 10 LEU n 1 11 SER n 1 12 VAL n 1 13 ASP n 1 14 VAL n 1 15 GLY n 1 16 SER n 1 17 GLN n 1 18 GLY n 1 19 ASN n 1 20 PRO n 1 21 GLY n 1 22 ILE n 1 23 VAL n 1 24 GLU n 1 25 TYR n 1 26 LYS n 1 27 GLY n 1 28 VAL n 1 29 ASP n 1 30 THR n 1 31 LYS n 1 32 THR n 1 33 GLY n 1 34 GLU n 1 35 VAL n 1 36 LEU n 1 37 PHE n 1 38 GLU n 1 39 ARG n 1 40 GLU n 1 41 PRO n 1 42 ILE n 1 43 PRO n 1 44 ILE n 1 45 GLY n 1 46 THR n 1 47 ASN n 1 48 ASN n 1 49 MET n 1 50 GLY n 1 51 GLU n 1 52 PHE n 1 53 LEU n 1 54 ALA n 1 55 ILE n 1 56 VAL n 1 57 HIS n 1 58 GLY n 1 59 LEU n 1 60 ARG n 1 61 TYR n 1 62 LEU n 1 63 LYS n 1 64 GLU n 1 65 ARG n 1 66 ASN n 1 67 SER n 1 68 ARG n 1 69 LYS n 1 70 PRO n 1 71 ILE n 1 72 TYR n 1 73 SER n 1 74 ASN n 1 75 SER n 1 76 GLN n 1 77 THR n 1 78 ALA n 1 79 ILE n 1 80 LYS n 1 81 TRP n 1 82 VAL n 1 83 LYS n 1 84 ASP n 1 85 LYS n 1 86 LYS n 1 87 ALA n 1 88 LYS n 1 89 SER n 1 90 THR n 1 91 LEU n 1 92 VAL n 1 93 ARG n 1 94 ASN n 1 95 GLU n 1 96 GLU n 1 97 THR n 1 98 ALA n 1 99 LEU n 1 100 ILE n 1 101 TRP n 1 102 LYS n 1 103 LEU n 1 104 VAL n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 GLU n 1 109 GLU n 1 110 TRP n 1 111 LEU n 1 112 ASN n 1 113 THR n 1 114 HIS n 1 115 THR n 1 116 TYR n 1 117 GLU n 1 118 THR n 1 119 PRO n 1 120 ILE n 1 121 LEU n 1 122 LYS n 1 123 TRP n 1 124 GLN n 1 125 THR n 1 126 ASP n 1 127 LYS n 1 128 TRP n 1 129 GLY n 1 130 GLU n 1 131 ILE n 1 132 LYS n 1 133 ALA n 1 134 ASP n 1 135 TYR n 1 136 GLY n 1 137 ARG n 1 138 LYS n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 USM n 2 8 USM n 2 9 DC n 2 10 DG n 2 11 DC n 2 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rnhA, BH0863' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized modified dodecamer DNA (oligonucleotide)' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RNH1_BACHD Q9KEI9 1 ;AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; 59 ? 2 PDB 3EY1 3EY1 2 CGCGAAUUCGCG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EY1 A 1 ? 138 ? Q9KEI9 59 ? 196 ? 59 196 2 2 3EY1 B 1 ? 12 ? 3EY1 301 ? 312 ? 301 312 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3EY1 _struct_ref_seq_dif.mon_id ASN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 74 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9KEI9 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 132 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 132 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 USM 'DNA linking' n ;2'-S-methyl-2'-thiouridine 5'-(dihydrogen phosphate) ; ? 'C10 H15 N2 O8 P S' 354.273 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3EY1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_percent_sol 53.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '0.1 M Sodium Acetate (pH 4.6), 0.2 M ammonium sulphate, 25% PEG 4000., VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Sodium Acetate' ? ? ? 1 2 1 'ammonium sulphate' ? ? ? 1 3 1 'PEG 4000' ? ? ? 1 4 2 'Sodium Acetate' ? ? ? 1 5 2 'ammonium sulphate' ? ? ? 1 6 2 'PEG 4000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2007-10-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9785 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9785 # _reflns.entry_id 3EY1 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.60 _reflns.number_obs 26499 _reflns.number_all 26658 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 363.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 96.9 _reflns_shell.Rmerge_I_obs 0.290 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 9.9 _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2562 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3EY1 _refine.ls_number_reflns_obs 23865 _refine.ls_number_reflns_all 26449 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.0 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs 100 _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.261 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 2634 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3D0P, USING THE PROTEIN MOLECULE ALONE.' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1114 _refine_hist.pdbx_number_atoms_nucleic_acid 245 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 1480 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.026 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 3EY1 _struct.title ;A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EY1 _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text ;RNase H-DNA COMPLEX, PROTEIN-DNA COMPLEX, ENDONUCLEASE, 2'-THIOMETHYL URIDINE RIBONUCLEIC ACID, Hydrolase, Magnesium, Manganese, Metal-binding, Nuclease, HYDROLASE-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 46 ? ARG A 65 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 2 SER A 75 ? LYS A 85 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 3 THR A 97 ? ASN A 112 ? THR A 155 ASN A 170 1 ? 16 HELX_P HELX_P4 4 GLN A 124 ? GLY A 129 ? GLN A 182 GLY A 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DA 6 "O3'" ? ? ? 1_555 B USM 7 P ? ? B DA 306 B USM 307 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale2 covale both ? B USM 7 "O3'" ? ? ? 1_555 B USM 8 P ? ? B USM 307 B USM 308 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale3 covale both ? B USM 8 "O3'" ? ? ? 1_555 B DC 9 P ? ? B USM 308 B DC 309 1_555 ? ? ? ? ? ? ? 1.573 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 301 B DG 312 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 301 B DG 312 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 301 B DG 312 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 302 B DC 311 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 302 B DC 311 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 302 B DC 311 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? B DC 303 B DG 310 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? B DC 303 B DG 310 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? B DC 303 B DG 310 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 304 B DC 309 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 304 B DC 309 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 304 B DC 309 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N1 ? ? ? 1_555 B USM 8 N3 ? ? B DA 305 B USM 308 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 5 N6 ? ? ? 1_555 B USM 8 O4 ? ? B DA 305 B USM 308 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 6 N1 ? ? ? 1_555 B USM 7 N3 ? ? B DA 306 B USM 307 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 6 N6 ? ? ? 1_555 B USM 7 O4 ? ? B DA 306 B USM 307 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B USM 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? B USM 307 B DA 306 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B USM 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? B USM 307 B DA 306 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B USM 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? B USM 308 B DA 305 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B USM 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? B USM 308 B DA 305 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 309 B DG 304 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 309 B DG 304 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 309 B DG 304 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? B DG 310 B DC 303 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? B DG 310 B DC 303 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? B DG 310 B DC 303 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 311 B DG 302 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 311 B DG 302 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 311 B DG 302 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? B DG 312 B DC 301 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? B DG 312 B DC 301 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? B DG 312 B DC 301 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 19 A . ? ASN 77 A PRO 20 A ? PRO 78 A 1 4.01 2 TYR 135 A . ? TYR 193 A GLY 136 A ? GLY 194 A 1 8.83 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 35 ? GLY A 45 ? VAL A 93 GLY A 103 A 2 GLY A 21 ? ASP A 29 ? GLY A 79 ASP A 87 A 3 LEU A 10 ? GLY A 15 ? LEU A 68 GLY A 73 A 4 ILE A 71 ? SER A 73 ? ILE A 129 SER A 131 A 5 ILE A 120 ? LYS A 122 ? ILE A 178 LYS A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 36 ? O LEU A 94 N GLY A 27 ? N GLY A 85 A 2 3 O GLU A 24 ? O GLU A 82 N GLY A 15 ? N GLY A 73 A 3 4 N LEU A 10 ? N LEU A 68 O TYR A 72 ? O TYR A 130 A 4 5 N ILE A 71 ? N ILE A 129 O LEU A 121 ? O LEU A 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B GOL 601 ? 5 'BINDING SITE FOR RESIDUE GOL B 601' AC2 Software B GOL 602 ? 3 'BINDING SITE FOR RESIDUE GOL B 602' AC3 Software B GOL 603 ? 3 'BINDING SITE FOR RESIDUE GOL B 603' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLY A 18 ? GLY A 76 . ? 2_555 ? 2 AC1 5 ASN A 19 ? ASN A 77 . ? 2_555 ? 3 AC1 5 DC B 1 ? DC B 301 . ? 2_556 ? 4 AC1 5 DC B 1 ? DC B 301 . ? 1_555 ? 5 AC1 5 DG B 2 ? DG B 302 . ? 1_555 ? 6 AC2 3 USM B 7 ? USM B 307 . ? 1_555 ? 7 AC2 3 USM B 8 ? USM B 308 . ? 2_555 ? 8 AC2 3 USM B 8 ? USM B 308 . ? 1_555 ? 9 AC3 3 LYS A 80 ? LYS A 138 . ? 2_555 ? 10 AC3 3 DA B 5 ? DA B 305 . ? 1_555 ? 11 AC3 3 DA B 6 ? DA B 306 . ? 1_555 ? # _database_PDB_matrix.entry_id 3EY1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3EY1 _atom_sites.fract_transf_matrix[1][1] 0.012206 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002885 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015011 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026504 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 59 59 ALA ALA A . n A 1 2 LYS 2 60 60 LYS LYS A . n A 1 3 GLU 3 61 61 GLU GLU A . n A 1 4 GLU 4 62 62 GLU GLU A . n A 1 5 ILE 5 63 63 ILE ILE A . n A 1 6 ILE 6 64 64 ILE ILE A . n A 1 7 TRP 7 65 65 TRP TRP A . n A 1 8 GLU 8 66 66 GLU GLU A . n A 1 9 SER 9 67 67 SER SER A . n A 1 10 LEU 10 68 68 LEU LEU A . n A 1 11 SER 11 69 69 SER SER A . n A 1 12 VAL 12 70 70 VAL VAL A . n A 1 13 ASP 13 71 71 ASP ASP A . n A 1 14 VAL 14 72 72 VAL VAL A . n A 1 15 GLY 15 73 73 GLY GLY A . n A 1 16 SER 16 74 74 SER SER A . n A 1 17 GLN 17 75 75 GLN GLN A . n A 1 18 GLY 18 76 76 GLY GLY A . n A 1 19 ASN 19 77 77 ASN ASN A . n A 1 20 PRO 20 78 78 PRO PRO A . n A 1 21 GLY 21 79 79 GLY GLY A . n A 1 22 ILE 22 80 80 ILE ILE A . n A 1 23 VAL 23 81 81 VAL VAL A . n A 1 24 GLU 24 82 82 GLU GLU A . n A 1 25 TYR 25 83 83 TYR TYR A . n A 1 26 LYS 26 84 84 LYS LYS A . n A 1 27 GLY 27 85 85 GLY GLY A . n A 1 28 VAL 28 86 86 VAL VAL A . n A 1 29 ASP 29 87 87 ASP ASP A . n A 1 30 THR 30 88 88 THR THR A . n A 1 31 LYS 31 89 89 LYS LYS A . n A 1 32 THR 32 90 90 THR THR A . n A 1 33 GLY 33 91 91 GLY GLY A . n A 1 34 GLU 34 92 92 GLU GLU A . n A 1 35 VAL 35 93 93 VAL VAL A . n A 1 36 LEU 36 94 94 LEU LEU A . n A 1 37 PHE 37 95 95 PHE PHE A . n A 1 38 GLU 38 96 96 GLU GLU A . n A 1 39 ARG 39 97 97 ARG ARG A . n A 1 40 GLU 40 98 98 GLU GLU A . n A 1 41 PRO 41 99 99 PRO PRO A . n A 1 42 ILE 42 100 100 ILE ILE A . n A 1 43 PRO 43 101 101 PRO PRO A . n A 1 44 ILE 44 102 102 ILE ILE A . n A 1 45 GLY 45 103 103 GLY GLY A . n A 1 46 THR 46 104 104 THR THR A . n A 1 47 ASN 47 105 105 ASN ASN A . n A 1 48 ASN 48 106 106 ASN ASN A . n A 1 49 MET 49 107 107 MET MET A . n A 1 50 GLY 50 108 108 GLY GLY A . n A 1 51 GLU 51 109 109 GLU GLU A . n A 1 52 PHE 52 110 110 PHE PHE A . n A 1 53 LEU 53 111 111 LEU LEU A . n A 1 54 ALA 54 112 112 ALA ALA A . n A 1 55 ILE 55 113 113 ILE ILE A . n A 1 56 VAL 56 114 114 VAL VAL A . n A 1 57 HIS 57 115 115 HIS HIS A . n A 1 58 GLY 58 116 116 GLY GLY A . n A 1 59 LEU 59 117 117 LEU LEU A . n A 1 60 ARG 60 118 118 ARG ARG A . n A 1 61 TYR 61 119 119 TYR TYR A . n A 1 62 LEU 62 120 120 LEU LEU A . n A 1 63 LYS 63 121 121 LYS LYS A . n A 1 64 GLU 64 122 122 GLU GLU A . n A 1 65 ARG 65 123 123 ARG ARG A . n A 1 66 ASN 66 124 124 ASN ASN A . n A 1 67 SER 67 125 125 SER SER A . n A 1 68 ARG 68 126 126 ARG ARG A . n A 1 69 LYS 69 127 127 LYS LYS A . n A 1 70 PRO 70 128 128 PRO PRO A . n A 1 71 ILE 71 129 129 ILE ILE A . n A 1 72 TYR 72 130 130 TYR TYR A . n A 1 73 SER 73 131 131 SER SER A . n A 1 74 ASN 74 132 132 ASN ASN A . n A 1 75 SER 75 133 133 SER SER A . n A 1 76 GLN 76 134 134 GLN GLN A . n A 1 77 THR 77 135 135 THR THR A . n A 1 78 ALA 78 136 136 ALA ALA A . n A 1 79 ILE 79 137 137 ILE ILE A . n A 1 80 LYS 80 138 138 LYS LYS A . n A 1 81 TRP 81 139 139 TRP TRP A . n A 1 82 VAL 82 140 140 VAL VAL A . n A 1 83 LYS 83 141 141 LYS LYS A . n A 1 84 ASP 84 142 142 ASP ASP A . n A 1 85 LYS 85 143 143 LYS LYS A . n A 1 86 LYS 86 144 144 LYS LYS A . n A 1 87 ALA 87 145 145 ALA ALA A . n A 1 88 LYS 88 146 146 LYS LYS A . n A 1 89 SER 89 147 147 SER SER A . n A 1 90 THR 90 148 148 THR THR A . n A 1 91 LEU 91 149 149 LEU LEU A . n A 1 92 VAL 92 150 150 VAL VAL A . n A 1 93 ARG 93 151 151 ARG ARG A . n A 1 94 ASN 94 152 152 ASN ASN A . n A 1 95 GLU 95 153 153 GLU GLU A . n A 1 96 GLU 96 154 154 GLU GLU A . n A 1 97 THR 97 155 155 THR THR A . n A 1 98 ALA 98 156 156 ALA ALA A . n A 1 99 LEU 99 157 157 LEU LEU A . n A 1 100 ILE 100 158 158 ILE ILE A . n A 1 101 TRP 101 159 159 TRP TRP A . n A 1 102 LYS 102 160 160 LYS LYS A . n A 1 103 LEU 103 161 161 LEU LEU A . n A 1 104 VAL 104 162 162 VAL VAL A . n A 1 105 ASP 105 163 163 ASP ASP A . n A 1 106 GLU 106 164 164 GLU GLU A . n A 1 107 ALA 107 165 165 ALA ALA A . n A 1 108 GLU 108 166 166 GLU GLU A . n A 1 109 GLU 109 167 167 GLU GLU A . n A 1 110 TRP 110 168 168 TRP TRP A . n A 1 111 LEU 111 169 169 LEU LEU A . n A 1 112 ASN 112 170 170 ASN ASN A . n A 1 113 THR 113 171 171 THR THR A . n A 1 114 HIS 114 172 172 HIS HIS A . n A 1 115 THR 115 173 173 THR THR A . n A 1 116 TYR 116 174 174 TYR TYR A . n A 1 117 GLU 117 175 175 GLU GLU A . n A 1 118 THR 118 176 176 THR THR A . n A 1 119 PRO 119 177 177 PRO PRO A . n A 1 120 ILE 120 178 178 ILE ILE A . n A 1 121 LEU 121 179 179 LEU LEU A . n A 1 122 LYS 122 180 180 LYS LYS A . n A 1 123 TRP 123 181 181 TRP TRP A . n A 1 124 GLN 124 182 182 GLN GLN A . n A 1 125 THR 125 183 183 THR THR A . n A 1 126 ASP 126 184 184 ASP ASP A . n A 1 127 LYS 127 185 185 LYS LYS A . n A 1 128 TRP 128 186 186 TRP TRP A . n A 1 129 GLY 129 187 187 GLY GLY A . n A 1 130 GLU 130 188 188 GLU GLU A . n A 1 131 ILE 131 189 189 ILE ILE A . n A 1 132 LYS 132 190 190 LYS LYS A . n A 1 133 ALA 133 191 191 ALA ALA A . n A 1 134 ASP 134 192 192 ASP ASP A . n A 1 135 TYR 135 193 193 TYR TYR A . n A 1 136 GLY 136 194 194 GLY GLY A . n A 1 137 ARG 137 195 195 ARG ARG A . n A 1 138 LYS 138 196 ? ? ? A . n B 2 1 DC 1 301 301 DC DC B . n B 2 2 DG 2 302 302 DG DG B . n B 2 3 DC 3 303 303 DC DC B . n B 2 4 DG 4 304 304 DG DG B . n B 2 5 DA 5 305 305 DA DA B . n B 2 6 DA 6 306 306 DA DA B . n B 2 7 USM 7 307 307 USM USM B . n B 2 8 USM 8 308 308 USM USM B . n B 2 9 DC 9 309 309 DC DC B . n B 2 10 DG 10 310 310 DG DG B . n B 2 11 DC 11 311 311 DC DC B . n B 2 12 DG 12 312 312 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 601 601 GOL GOL B . D 3 GOL 1 602 602 GOL GOL B . E 3 GOL 1 603 603 GOL GOL B . F 4 HOH 1 401 401 HOH HOH A . F 4 HOH 2 402 402 HOH HOH A . F 4 HOH 3 403 403 HOH HOH A . F 4 HOH 4 405 405 HOH HOH A . F 4 HOH 5 406 406 HOH HOH A . F 4 HOH 6 408 408 HOH HOH A . F 4 HOH 7 409 409 HOH HOH A . F 4 HOH 8 411 411 HOH HOH A . F 4 HOH 9 412 412 HOH HOH A . F 4 HOH 10 413 413 HOH HOH A . F 4 HOH 11 414 414 HOH HOH A . F 4 HOH 12 415 415 HOH HOH A . F 4 HOH 13 418 418 HOH HOH A . F 4 HOH 14 419 419 HOH HOH A . F 4 HOH 15 421 421 HOH HOH A . F 4 HOH 16 422 422 HOH HOH A . F 4 HOH 17 423 423 HOH HOH A . F 4 HOH 18 424 424 HOH HOH A . F 4 HOH 19 426 426 HOH HOH A . F 4 HOH 20 429 429 HOH HOH A . F 4 HOH 21 430 430 HOH HOH A . F 4 HOH 22 432 432 HOH HOH A . F 4 HOH 23 434 434 HOH HOH A . F 4 HOH 24 435 435 HOH HOH A . F 4 HOH 25 437 437 HOH HOH A . F 4 HOH 26 438 438 HOH HOH A . F 4 HOH 27 439 439 HOH HOH A . F 4 HOH 28 440 440 HOH HOH A . F 4 HOH 29 441 441 HOH HOH A . F 4 HOH 30 442 442 HOH HOH A . F 4 HOH 31 443 443 HOH HOH A . F 4 HOH 32 444 444 HOH HOH A . F 4 HOH 33 445 445 HOH HOH A . F 4 HOH 34 446 446 HOH HOH A . F 4 HOH 35 447 447 HOH HOH A . F 4 HOH 36 448 448 HOH HOH A . F 4 HOH 37 449 449 HOH HOH A . F 4 HOH 38 450 450 HOH HOH A . F 4 HOH 39 451 451 HOH HOH A . F 4 HOH 40 454 454 HOH HOH A . F 4 HOH 41 456 456 HOH HOH A . F 4 HOH 42 458 458 HOH HOH A . F 4 HOH 43 459 459 HOH HOH A . F 4 HOH 44 462 462 HOH HOH A . F 4 HOH 45 463 463 HOH HOH A . F 4 HOH 46 464 464 HOH HOH A . F 4 HOH 47 465 465 HOH HOH A . F 4 HOH 48 466 466 HOH HOH A . F 4 HOH 49 467 467 HOH HOH A . F 4 HOH 50 468 468 HOH HOH A . F 4 HOH 51 469 469 HOH HOH A . F 4 HOH 52 470 470 HOH HOH A . F 4 HOH 53 471 471 HOH HOH A . F 4 HOH 54 472 472 HOH HOH A . F 4 HOH 55 473 473 HOH HOH A . F 4 HOH 56 474 474 HOH HOH A . F 4 HOH 57 475 475 HOH HOH A . F 4 HOH 58 477 477 HOH HOH A . F 4 HOH 59 478 478 HOH HOH A . F 4 HOH 60 479 479 HOH HOH A . F 4 HOH 61 480 480 HOH HOH A . F 4 HOH 62 481 481 HOH HOH A . F 4 HOH 63 482 482 HOH HOH A . F 4 HOH 64 485 485 HOH HOH A . F 4 HOH 65 486 486 HOH HOH A . F 4 HOH 66 494 494 HOH HOH A . F 4 HOH 67 496 496 HOH HOH A . F 4 HOH 68 497 497 HOH HOH A . F 4 HOH 69 498 498 HOH HOH A . F 4 HOH 70 499 499 HOH HOH A . F 4 HOH 71 500 500 HOH HOH A . F 4 HOH 72 501 501 HOH HOH A . F 4 HOH 73 502 502 HOH HOH A . F 4 HOH 74 503 503 HOH HOH A . G 4 HOH 1 404 404 HOH HOH B . G 4 HOH 2 407 407 HOH HOH B . G 4 HOH 3 410 410 HOH HOH B . G 4 HOH 4 416 416 HOH HOH B . G 4 HOH 5 417 417 HOH HOH B . G 4 HOH 6 420 420 HOH HOH B . G 4 HOH 7 425 425 HOH HOH B . G 4 HOH 8 427 427 HOH HOH B . G 4 HOH 9 428 428 HOH HOH B . G 4 HOH 10 431 431 HOH HOH B . G 4 HOH 11 433 433 HOH HOH B . G 4 HOH 12 436 436 HOH HOH B . G 4 HOH 13 452 452 HOH HOH B . G 4 HOH 14 453 453 HOH HOH B . G 4 HOH 15 455 455 HOH HOH B . G 4 HOH 16 457 457 HOH HOH B . G 4 HOH 17 460 460 HOH HOH B . G 4 HOH 18 461 461 HOH HOH B . G 4 HOH 19 476 476 HOH HOH B . G 4 HOH 20 483 483 HOH HOH B . G 4 HOH 21 484 484 HOH HOH B . G 4 HOH 22 487 487 HOH HOH B . G 4 HOH 23 488 488 HOH HOH B . G 4 HOH 24 489 489 HOH HOH B . G 4 HOH 25 490 490 HOH HOH B . G 4 HOH 26 491 491 HOH HOH B . G 4 HOH 27 492 492 HOH HOH B . G 4 HOH 28 493 493 HOH HOH B . G 4 HOH 29 495 495 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B USM 7 B USM 307 ? DU ? 2 B USM 8 B USM 308 ? DU ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5620 ? 1 MORE -13 ? 1 'SSA (A^2)' 17070 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 MOLREP phasing . ? 2 SHELXL-97 refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A SER 74 ? ? N A GLN 75 ? ? CA A GLN 75 ? ? 138.64 121.70 16.94 2.50 Y 2 1 NE A ARG 97 ? ? CZ A ARG 97 ? ? NH1 A ARG 97 ? ? 114.34 120.30 -5.96 0.50 N 3 1 OE1 A GLU 154 ? ? CD A GLU 154 ? ? OE2 A GLU 154 ? ? 115.19 123.30 -8.11 1.20 N 4 1 C A TYR 193 ? ? N A GLY 194 ? ? CA A GLY 194 ? ? 135.40 122.30 13.10 2.10 Y 5 1 "O4'" B DC 301 ? ? "C1'" B DC 301 ? ? N1 B DC 301 ? ? 102.55 108.00 -5.45 0.70 N 6 1 "O4'" B DC 303 ? ? "C1'" B DC 303 ? ? N1 B DC 303 ? ? 97.77 108.00 -10.23 0.70 N 7 1 "O4'" B DG 304 ? ? "C1'" B DG 304 ? ? N9 B DG 304 ? ? 112.24 108.30 3.94 0.30 N 8 1 "C3'" B DG 304 ? ? "O3'" B DG 304 ? ? P B DA 305 ? ? 127.02 119.70 7.32 1.20 Y 9 1 "O4'" B DA 305 ? ? "C1'" B DA 305 ? ? N9 B DA 305 ? ? 101.90 108.00 -6.10 0.70 N 10 1 "O4'" B DG 312 ? ? "C1'" B DG 312 ? ? N9 B DG 312 ? ? 110.26 108.30 1.96 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 60 ? ? -69.69 60.18 2 1 GLU A 62 ? ? -36.02 -78.23 3 1 SER A 74 ? ? -125.51 -111.62 4 1 GLN A 75 ? ? 102.79 -108.62 5 1 ASN A 124 ? ? 74.50 -2.18 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id LYS _pdbx_unobs_or_zero_occ_residues.auth_seq_id 196 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id LYS _pdbx_unobs_or_zero_occ_residues.label_seq_id 138 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 GLN N N N N 181 GLN CA C N S 182 GLN C C N N 183 GLN O O N N 184 GLN CB C N N 185 GLN CG C N N 186 GLN CD C N N 187 GLN OE1 O N N 188 GLN NE2 N N N 189 GLN OXT O N N 190 GLN H H N N 191 GLN H2 H N N 192 GLN HA H N N 193 GLN HB2 H N N 194 GLN HB3 H N N 195 GLN HG2 H N N 196 GLN HG3 H N N 197 GLN HE21 H N N 198 GLN HE22 H N N 199 GLN HXT H N N 200 GLU N N N N 201 GLU CA C N S 202 GLU C C N N 203 GLU O O N N 204 GLU CB C N N 205 GLU CG C N N 206 GLU CD C N N 207 GLU OE1 O N N 208 GLU OE2 O N N 209 GLU OXT O N N 210 GLU H H N N 211 GLU H2 H N N 212 GLU HA H N N 213 GLU HB2 H N N 214 GLU HB3 H N N 215 GLU HG2 H N N 216 GLU HG3 H N N 217 GLU HE2 H N N 218 GLU HXT H N N 219 GLY N N N N 220 GLY CA C N N 221 GLY C C N N 222 GLY O O N N 223 GLY OXT O N N 224 GLY H H N N 225 GLY H2 H N N 226 GLY HA2 H N N 227 GLY HA3 H N N 228 GLY HXT H N N 229 GOL C1 C N N 230 GOL O1 O N N 231 GOL C2 C N N 232 GOL O2 O N N 233 GOL C3 C N N 234 GOL O3 O N N 235 GOL H11 H N N 236 GOL H12 H N N 237 GOL HO1 H N N 238 GOL H2 H N N 239 GOL HO2 H N N 240 GOL H31 H N N 241 GOL H32 H N N 242 GOL HO3 H N N 243 HIS N N N N 244 HIS CA C N S 245 HIS C C N N 246 HIS O O N N 247 HIS CB C N N 248 HIS CG C Y N 249 HIS ND1 N Y N 250 HIS CD2 C Y N 251 HIS CE1 C Y N 252 HIS NE2 N Y N 253 HIS OXT O N N 254 HIS H H N N 255 HIS H2 H N N 256 HIS HA H N N 257 HIS HB2 H N N 258 HIS HB3 H N N 259 HIS HD1 H N N 260 HIS HD2 H N N 261 HIS HE1 H N N 262 HIS HE2 H N N 263 HIS HXT H N N 264 HOH O O N N 265 HOH H1 H N N 266 HOH H2 H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TRP N N N N 428 TRP CA C N S 429 TRP C C N N 430 TRP O O N N 431 TRP CB C N N 432 TRP CG C Y N 433 TRP CD1 C Y N 434 TRP CD2 C Y N 435 TRP NE1 N Y N 436 TRP CE2 C Y N 437 TRP CE3 C Y N 438 TRP CZ2 C Y N 439 TRP CZ3 C Y N 440 TRP CH2 C Y N 441 TRP OXT O N N 442 TRP H H N N 443 TRP H2 H N N 444 TRP HA H N N 445 TRP HB2 H N N 446 TRP HB3 H N N 447 TRP HD1 H N N 448 TRP HE1 H N N 449 TRP HE3 H N N 450 TRP HZ2 H N N 451 TRP HZ3 H N N 452 TRP HH2 H N N 453 TRP HXT H N N 454 TYR N N N N 455 TYR CA C N S 456 TYR C C N N 457 TYR O O N N 458 TYR CB C N N 459 TYR CG C Y N 460 TYR CD1 C Y N 461 TYR CD2 C Y N 462 TYR CE1 C Y N 463 TYR CE2 C Y N 464 TYR CZ C Y N 465 TYR OH O N N 466 TYR OXT O N N 467 TYR H H N N 468 TYR H2 H N N 469 TYR HA H N N 470 TYR HB2 H N N 471 TYR HB3 H N N 472 TYR HD1 H N N 473 TYR HD2 H N N 474 TYR HE1 H N N 475 TYR HE2 H N N 476 TYR HH H N N 477 TYR HXT H N N 478 USM OP2 O N N 479 USM P P N N 480 USM OP1 O N N 481 USM OP3 O N N 482 USM "O5'" O N N 483 USM N1 N N N 484 USM C6 C N N 485 USM C2 C N N 486 USM O2 O N N 487 USM N3 N N N 488 USM C4 C N N 489 USM O4 O N N 490 USM C5 C N N 491 USM "C2'" C N R 492 USM "S2'" S N N 493 USM C2A C N N 494 USM "C5'" C N N 495 USM "C4'" C N R 496 USM "O4'" O N N 497 USM "C1'" C N R 498 USM "C3'" C N R 499 USM "O3'" O N N 500 USM HOP2 H N N 501 USM HOP3 H N N 502 USM H6 H N N 503 USM H5 H N N 504 USM "H2'" H N N 505 USM H2A H N N 506 USM H2AA H N N 507 USM H2AB H N N 508 USM "H5'" H N N 509 USM "H5'A" H N N 510 USM "H4'" H N N 511 USM "H1'" H N N 512 USM "H3'" H N N 513 USM "HO3'" H N N 514 USM HN3 H N N 515 VAL N N N N 516 VAL CA C N S 517 VAL C C N N 518 VAL O O N N 519 VAL CB C N N 520 VAL CG1 C N N 521 VAL CG2 C N N 522 VAL OXT O N N 523 VAL H H N N 524 VAL H2 H N N 525 VAL HA H N N 526 VAL HB H N N 527 VAL HG11 H N N 528 VAL HG12 H N N 529 VAL HG13 H N N 530 VAL HG21 H N N 531 VAL HG22 H N N 532 VAL HG23 H N N 533 VAL HXT H N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 GLN N CA sing N N 182 GLN N H sing N N 183 GLN N H2 sing N N 184 GLN CA C sing N N 185 GLN CA CB sing N N 186 GLN CA HA sing N N 187 GLN C O doub N N 188 GLN C OXT sing N N 189 GLN CB CG sing N N 190 GLN CB HB2 sing N N 191 GLN CB HB3 sing N N 192 GLN CG CD sing N N 193 GLN CG HG2 sing N N 194 GLN CG HG3 sing N N 195 GLN CD OE1 doub N N 196 GLN CD NE2 sing N N 197 GLN NE2 HE21 sing N N 198 GLN NE2 HE22 sing N N 199 GLN OXT HXT sing N N 200 GLU N CA sing N N 201 GLU N H sing N N 202 GLU N H2 sing N N 203 GLU CA C sing N N 204 GLU CA CB sing N N 205 GLU CA HA sing N N 206 GLU C O doub N N 207 GLU C OXT sing N N 208 GLU CB CG sing N N 209 GLU CB HB2 sing N N 210 GLU CB HB3 sing N N 211 GLU CG CD sing N N 212 GLU CG HG2 sing N N 213 GLU CG HG3 sing N N 214 GLU CD OE1 doub N N 215 GLU CD OE2 sing N N 216 GLU OE2 HE2 sing N N 217 GLU OXT HXT sing N N 218 GLY N CA sing N N 219 GLY N H sing N N 220 GLY N H2 sing N N 221 GLY CA C sing N N 222 GLY CA HA2 sing N N 223 GLY CA HA3 sing N N 224 GLY C O doub N N 225 GLY C OXT sing N N 226 GLY OXT HXT sing N N 227 GOL C1 O1 sing N N 228 GOL C1 C2 sing N N 229 GOL C1 H11 sing N N 230 GOL C1 H12 sing N N 231 GOL O1 HO1 sing N N 232 GOL C2 O2 sing N N 233 GOL C2 C3 sing N N 234 GOL C2 H2 sing N N 235 GOL O2 HO2 sing N N 236 GOL C3 O3 sing N N 237 GOL C3 H31 sing N N 238 GOL C3 H32 sing N N 239 GOL O3 HO3 sing N N 240 HIS N CA sing N N 241 HIS N H sing N N 242 HIS N H2 sing N N 243 HIS CA C sing N N 244 HIS CA CB sing N N 245 HIS CA HA sing N N 246 HIS C O doub N N 247 HIS C OXT sing N N 248 HIS CB CG sing N N 249 HIS CB HB2 sing N N 250 HIS CB HB3 sing N N 251 HIS CG ND1 sing Y N 252 HIS CG CD2 doub Y N 253 HIS ND1 CE1 doub Y N 254 HIS ND1 HD1 sing N N 255 HIS CD2 NE2 sing Y N 256 HIS CD2 HD2 sing N N 257 HIS CE1 NE2 sing Y N 258 HIS CE1 HE1 sing N N 259 HIS NE2 HE2 sing N N 260 HIS OXT HXT sing N N 261 HOH O H1 sing N N 262 HOH O H2 sing N N 263 ILE N CA sing N N 264 ILE N H sing N N 265 ILE N H2 sing N N 266 ILE CA C sing N N 267 ILE CA CB sing N N 268 ILE CA HA sing N N 269 ILE C O doub N N 270 ILE C OXT sing N N 271 ILE CB CG1 sing N N 272 ILE CB CG2 sing N N 273 ILE CB HB sing N N 274 ILE CG1 CD1 sing N N 275 ILE CG1 HG12 sing N N 276 ILE CG1 HG13 sing N N 277 ILE CG2 HG21 sing N N 278 ILE CG2 HG22 sing N N 279 ILE CG2 HG23 sing N N 280 ILE CD1 HD11 sing N N 281 ILE CD1 HD12 sing N N 282 ILE CD1 HD13 sing N N 283 ILE OXT HXT sing N N 284 LEU N CA sing N N 285 LEU N H sing N N 286 LEU N H2 sing N N 287 LEU CA C sing N N 288 LEU CA CB sing N N 289 LEU CA HA sing N N 290 LEU C O doub N N 291 LEU C OXT sing N N 292 LEU CB CG sing N N 293 LEU CB HB2 sing N N 294 LEU CB HB3 sing N N 295 LEU CG CD1 sing N N 296 LEU CG CD2 sing N N 297 LEU CG HG sing N N 298 LEU CD1 HD11 sing N N 299 LEU CD1 HD12 sing N N 300 LEU CD1 HD13 sing N N 301 LEU CD2 HD21 sing N N 302 LEU CD2 HD22 sing N N 303 LEU CD2 HD23 sing N N 304 LEU OXT HXT sing N N 305 LYS N CA sing N N 306 LYS N H sing N N 307 LYS N H2 sing N N 308 LYS CA C sing N N 309 LYS CA CB sing N N 310 LYS CA HA sing N N 311 LYS C O doub N N 312 LYS C OXT sing N N 313 LYS CB CG sing N N 314 LYS CB HB2 sing N N 315 LYS CB HB3 sing N N 316 LYS CG CD sing N N 317 LYS CG HG2 sing N N 318 LYS CG HG3 sing N N 319 LYS CD CE sing N N 320 LYS CD HD2 sing N N 321 LYS CD HD3 sing N N 322 LYS CE NZ sing N N 323 LYS CE HE2 sing N N 324 LYS CE HE3 sing N N 325 LYS NZ HZ1 sing N N 326 LYS NZ HZ2 sing N N 327 LYS NZ HZ3 sing N N 328 LYS OXT HXT sing N N 329 MET N CA sing N N 330 MET N H sing N N 331 MET N H2 sing N N 332 MET CA C sing N N 333 MET CA CB sing N N 334 MET CA HA sing N N 335 MET C O doub N N 336 MET C OXT sing N N 337 MET CB CG sing N N 338 MET CB HB2 sing N N 339 MET CB HB3 sing N N 340 MET CG SD sing N N 341 MET CG HG2 sing N N 342 MET CG HG3 sing N N 343 MET SD CE sing N N 344 MET CE HE1 sing N N 345 MET CE HE2 sing N N 346 MET CE HE3 sing N N 347 MET OXT HXT sing N N 348 PHE N CA sing N N 349 PHE N H sing N N 350 PHE N H2 sing N N 351 PHE CA C sing N N 352 PHE CA CB sing N N 353 PHE CA HA sing N N 354 PHE C O doub N N 355 PHE C OXT sing N N 356 PHE CB CG sing N N 357 PHE CB HB2 sing N N 358 PHE CB HB3 sing N N 359 PHE CG CD1 doub Y N 360 PHE CG CD2 sing Y N 361 PHE CD1 CE1 sing Y N 362 PHE CD1 HD1 sing N N 363 PHE CD2 CE2 doub Y N 364 PHE CD2 HD2 sing N N 365 PHE CE1 CZ doub Y N 366 PHE CE1 HE1 sing N N 367 PHE CE2 CZ sing Y N 368 PHE CE2 HE2 sing N N 369 PHE CZ HZ sing N N 370 PHE OXT HXT sing N N 371 PRO N CA sing N N 372 PRO N CD sing N N 373 PRO N H sing N N 374 PRO CA C sing N N 375 PRO CA CB sing N N 376 PRO CA HA sing N N 377 PRO C O doub N N 378 PRO C OXT sing N N 379 PRO CB CG sing N N 380 PRO CB HB2 sing N N 381 PRO CB HB3 sing N N 382 PRO CG CD sing N N 383 PRO CG HG2 sing N N 384 PRO CG HG3 sing N N 385 PRO CD HD2 sing N N 386 PRO CD HD3 sing N N 387 PRO OXT HXT sing N N 388 SER N CA sing N N 389 SER N H sing N N 390 SER N H2 sing N N 391 SER CA C sing N N 392 SER CA CB sing N N 393 SER CA HA sing N N 394 SER C O doub N N 395 SER C OXT sing N N 396 SER CB OG sing N N 397 SER CB HB2 sing N N 398 SER CB HB3 sing N N 399 SER OG HG sing N N 400 SER OXT HXT sing N N 401 THR N CA sing N N 402 THR N H sing N N 403 THR N H2 sing N N 404 THR CA C sing N N 405 THR CA CB sing N N 406 THR CA HA sing N N 407 THR C O doub N N 408 THR C OXT sing N N 409 THR CB OG1 sing N N 410 THR CB CG2 sing N N 411 THR CB HB sing N N 412 THR OG1 HG1 sing N N 413 THR CG2 HG21 sing N N 414 THR CG2 HG22 sing N N 415 THR CG2 HG23 sing N N 416 THR OXT HXT sing N N 417 TRP N CA sing N N 418 TRP N H sing N N 419 TRP N H2 sing N N 420 TRP CA C sing N N 421 TRP CA CB sing N N 422 TRP CA HA sing N N 423 TRP C O doub N N 424 TRP C OXT sing N N 425 TRP CB CG sing N N 426 TRP CB HB2 sing N N 427 TRP CB HB3 sing N N 428 TRP CG CD1 doub Y N 429 TRP CG CD2 sing Y N 430 TRP CD1 NE1 sing Y N 431 TRP CD1 HD1 sing N N 432 TRP CD2 CE2 doub Y N 433 TRP CD2 CE3 sing Y N 434 TRP NE1 CE2 sing Y N 435 TRP NE1 HE1 sing N N 436 TRP CE2 CZ2 sing Y N 437 TRP CE3 CZ3 doub Y N 438 TRP CE3 HE3 sing N N 439 TRP CZ2 CH2 doub Y N 440 TRP CZ2 HZ2 sing N N 441 TRP CZ3 CH2 sing Y N 442 TRP CZ3 HZ3 sing N N 443 TRP CH2 HH2 sing N N 444 TRP OXT HXT sing N N 445 TYR N CA sing N N 446 TYR N H sing N N 447 TYR N H2 sing N N 448 TYR CA C sing N N 449 TYR CA CB sing N N 450 TYR CA HA sing N N 451 TYR C O doub N N 452 TYR C OXT sing N N 453 TYR CB CG sing N N 454 TYR CB HB2 sing N N 455 TYR CB HB3 sing N N 456 TYR CG CD1 doub Y N 457 TYR CG CD2 sing Y N 458 TYR CD1 CE1 sing Y N 459 TYR CD1 HD1 sing N N 460 TYR CD2 CE2 doub Y N 461 TYR CD2 HD2 sing N N 462 TYR CE1 CZ doub Y N 463 TYR CE1 HE1 sing N N 464 TYR CE2 CZ sing Y N 465 TYR CE2 HE2 sing N N 466 TYR CZ OH sing N N 467 TYR OH HH sing N N 468 TYR OXT HXT sing N N 469 USM P OP2 sing N N 470 USM OP2 HOP2 sing N N 471 USM OP1 P doub N N 472 USM "O5'" P sing N N 473 USM P OP3 sing N N 474 USM OP3 HOP3 sing N N 475 USM "C5'" "O5'" sing N N 476 USM C6 N1 sing N N 477 USM N1 C2 sing N N 478 USM N1 "C1'" sing N N 479 USM C5 C6 doub N N 480 USM C6 H6 sing N N 481 USM N3 C2 sing N N 482 USM C2 O2 doub N N 483 USM C4 N3 sing N N 484 USM C5 C4 sing N N 485 USM O4 C4 doub N N 486 USM C5 H5 sing N N 487 USM "C3'" "C2'" sing N N 488 USM "C2'" "C1'" sing N N 489 USM "C2'" "S2'" sing N N 490 USM "C2'" "H2'" sing N N 491 USM "S2'" C2A sing N N 492 USM C2A H2A sing N N 493 USM C2A H2AA sing N N 494 USM C2A H2AB sing N N 495 USM "C5'" "C4'" sing N N 496 USM "C5'" "H5'" sing N N 497 USM "C5'" "H5'A" sing N N 498 USM "C3'" "C4'" sing N N 499 USM "C4'" "O4'" sing N N 500 USM "C4'" "H4'" sing N N 501 USM "O4'" "C1'" sing N N 502 USM "C1'" "H1'" sing N N 503 USM "O3'" "C3'" sing N N 504 USM "C3'" "H3'" sing N N 505 USM "O3'" "HO3'" sing N N 506 USM N3 HN3 sing N N 507 VAL N CA sing N N 508 VAL N H sing N N 509 VAL N H2 sing N N 510 VAL CA C sing N N 511 VAL CA CB sing N N 512 VAL CA HA sing N N 513 VAL C O doub N N 514 VAL C OXT sing N N 515 VAL CB CG1 sing N N 516 VAL CB CG2 sing N N 517 VAL CB HB sing N N 518 VAL CG1 HG11 sing N N 519 VAL CG1 HG12 sing N N 520 VAL CG1 HG13 sing N N 521 VAL CG2 HG21 sing N N 522 VAL CG2 HG22 sing N N 523 VAL CG2 HG23 sing N N 524 VAL OXT HXT sing N N 525 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3EY1 'double helix' 3EY1 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 B DG 12 2_555 0.143 -0.060 0.432 -18.148 0.362 -2.409 1 B_DC301:DG312_B B 301 ? B 312 ? 19 1 1 B DG 2 1_555 B DC 11 2_555 -0.273 -0.130 0.047 6.697 -8.371 -1.270 2 B_DG302:DC311_B B 302 ? B 311 ? 19 1 1 B DC 3 1_555 B DG 10 2_555 0.156 -0.109 -0.241 3.292 -7.920 -1.017 3 B_DC303:DG310_B B 303 ? B 310 ? 19 1 1 B DG 4 1_555 B DC 9 2_555 -0.177 -0.060 0.276 17.763 -7.437 -1.207 4 B_DG304:DC309_B B 304 ? B 309 ? 19 1 1 B DA 5 1_555 B USM 8 2_555 0.094 -0.125 0.009 16.390 -21.700 0.606 5 B_DA305:USM308_B B 305 ? B 308 ? 20 1 1 B DA 6 1_555 B USM 7 2_555 0.209 -0.021 0.193 11.930 -27.470 -1.447 6 B_DA306:USM307_B B 306 ? B 307 ? 20 1 1 B USM 7 1_555 B DA 6 2_555 -0.209 -0.021 0.193 -11.930 -27.470 -1.447 7 B_USM307:DA306_B B 307 ? B 306 ? 20 1 1 B USM 8 1_555 B DA 5 2_555 -0.094 -0.125 0.009 -16.390 -21.700 0.606 8 B_USM308:DA305_B B 308 ? B 305 ? 20 1 1 B DC 9 1_555 B DG 4 2_555 0.177 -0.060 0.276 -17.763 -7.437 -1.207 9 B_DC309:DG304_B B 309 ? B 304 ? 19 1 1 B DG 10 1_555 B DC 3 2_555 -0.156 -0.109 -0.241 -3.292 -7.920 -1.017 10 B_DG310:DC303_B B 310 ? B 303 ? 19 1 1 B DC 11 1_555 B DG 2 2_555 0.273 -0.130 0.047 -6.697 -8.371 -1.270 11 B_DC311:DG302_B B 311 ? B 302 ? 19 1 1 B DG 12 1_555 B DC 1 2_555 -0.143 -0.060 0.432 18.148 0.362 -2.409 12 B_DG312:DC301_B B 312 ? B 301 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 B DG 12 2_555 B DG 2 1_555 B DC 11 2_555 -0.009 0.119 2.821 2.602 7.794 27.231 -1.313 0.538 2.736 16.096 -5.374 28.422 1 BB_DC301DG302:DC311DG312_BB B 301 ? B 312 ? B 302 ? B 311 ? 1 B DG 2 1_555 B DC 11 2_555 B DC 3 1_555 B DG 10 2_555 -0.468 -0.528 3.375 1.985 8.984 31.136 -2.535 1.190 3.073 16.297 -3.602 32.435 2 BB_DG302DC303:DG310DC311_BB B 302 ? B 311 ? B 303 ? B 310 ? 1 B DC 3 1_555 B DG 10 2_555 B DG 4 1_555 B DC 9 2_555 0.581 0.366 3.191 -3.555 17.070 25.858 -2.599 -1.767 2.795 33.702 7.020 31.104 3 BB_DC303DG304:DC309DG310_BB B 303 ? B 310 ? B 304 ? B 309 ? 1 B DG 4 1_555 B DC 9 2_555 B DA 5 1_555 B USM 8 2_555 -0.682 -0.405 3.228 -1.682 9.169 38.907 -1.624 0.809 3.084 13.531 2.482 39.966 4 BB_DG304DA305:USM308DC309_BB B 304 ? B 309 ? B 305 ? B 308 ? 1 B DA 5 1_555 B USM 8 2_555 B DA 6 1_555 B USM 7 2_555 0.324 -0.334 3.293 0.326 5.390 34.736 -1.358 -0.488 3.209 8.960 -0.542 35.141 5 BB_DA305DA306:USM307USM308_BB B 305 ? B 308 ? B 306 ? B 307 ? 1 B DA 6 1_555 B USM 7 2_555 B USM 7 1_555 B DA 6 2_555 0.000 -0.047 3.686 0.000 -11.017 38.617 1.355 0.000 3.568 -16.261 0.000 40.100 6 BB_DA306USM307:DA306USM307_BB B 306 ? B 307 ? B 307 ? B 306 ? 1 B USM 7 1_555 B DA 6 2_555 B USM 8 1_555 B DA 5 2_555 -0.324 -0.334 3.293 -0.326 5.390 34.736 -1.358 0.488 3.209 8.960 0.542 35.141 7 BB_USM307USM308:DA305DA306_BB B 307 ? B 306 ? B 308 ? B 305 ? 1 B USM 8 1_555 B DA 5 2_555 B DC 9 1_555 B DG 4 2_555 0.682 -0.405 3.228 1.682 9.169 38.907 -1.624 -0.809 3.084 13.530 -2.482 39.966 8 BB_USM308DC309:DG304DA305_BB B 308 ? B 305 ? B 309 ? B 304 ? 1 B DC 9 1_555 B DG 4 2_555 B DG 10 1_555 B DC 3 2_555 -0.581 0.366 3.191 3.555 17.070 25.858 -2.599 1.767 2.795 33.702 -7.020 31.104 9 BB_DC309DG310:DC303DG304_BB B 309 ? B 304 ? B 310 ? B 303 ? 1 B DG 10 1_555 B DC 3 2_555 B DC 11 1_555 B DG 2 2_555 0.468 -0.528 3.375 -1.985 8.984 31.136 -2.535 -1.190 3.073 16.297 3.602 32.435 10 BB_DG310DC311:DG302DC303_BB B 310 ? B 303 ? B 311 ? B 302 ? 1 B DC 11 1_555 B DG 2 2_555 B DG 12 1_555 B DC 1 2_555 0.009 0.119 2.821 -2.602 7.794 27.231 -1.313 -0.538 2.736 16.096 5.374 28.422 11 BB_DC311DG312:DC301DG302_BB B 311 ? B 302 ? B 312 ? B 301 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3D0P _pdbx_initial_refinement_model.details 'PDB ENTRY 3D0P, USING THE PROTEIN MOLECULE ALONE.' #