HEADER TRANSCRIPTION 20-OCT-08 3EYB TITLE STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE LIGAND BINDING DOMAIN OF A TITLE 2 NON-DUPLICATED RXR FROM THE INVERTEBRATE CHORDATE AMPHIOXUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR HORMONE RECEPTOR RXR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 266-484, LIGAND BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRANCHIOSTOMA FLORIDAE; SOURCE 3 ORGANISM_COMMON: FLORIDA LANCELET; SOURCE 4 ORGANISM_TAXID: 7739; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS AMPHIOXUS, RETINOID X RECEPTOR, NUCLEAR RECEPTOR, LIGAND BINDING, KEYWDS 2 DNA-BINDING, METAL-BINDING, NUCLEUS, RECEPTOR, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, ZINC-FINGER, STRUCTURAL GENOMICS, KEYWDS 4 STRUCTURAL PROTEOMICS IN EUROPE, SPINE EXPDTA X-RAY DIFFRACTION AUTHOR G.D.TOCCHINI-VALENTINI,N.ROCHEL,D.MORAS,STRUCTURAL PROTEOMICS IN AUTHOR 2 EUROPE (SPINE) REVDAT 5 06-SEP-23 3EYB 1 REMARK REVDAT 4 01-SEP-10 3EYB 1 JRNL REVDAT 3 08-SEP-09 3EYB 1 REMARK REVDAT 2 24-FEB-09 3EYB 1 VERSN REVDAT 1 04-NOV-08 3EYB 0 JRNL AUTH G.D.TOCCHINI-VALENTINI,N.ROCHEL,H.ESCRIVA,P.GERMAIN, JRNL AUTH 2 C.PELUSO-ILTIS,M.PARIS,S.SANGLIER-CIANFERANI, JRNL AUTH 3 A.VAN DORSSELAER,D.MORAS,V.LAUDET JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE LIGAND-BINDING JRNL TITL 2 DOMAIN OF A NONDUPLICATED RETINOID X NUCLEAR RECEPTOR FROM JRNL TITL 3 THE INVERTEBRATE CHORDATE AMPHIOXUS JRNL REF J.BIOL.CHEM. V. 284 1938 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 18986992 JRNL DOI 10.1074/JBC.M805692200 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1167 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6147 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; 0.016 ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; 1.670 ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.20000 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1LBD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M NA ACETATE, 0.1 M ADA PH=6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.36150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.67150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.67150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.36150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 282 REMARK 465 ASP A 283 REMARK 465 GLY A 284 REMARK 465 ASN A 285 REMARK 465 MET A 286 REMARK 465 VAL A 287 REMARK 465 GLU A 288 REMARK 465 GLN A 289 REMARK 465 PRO A 290 REMARK 465 ASN A 291 REMARK 465 ASP A 292 REMARK 465 PRO A 293 REMARK 465 VAL A 294 REMARK 465 THR A 295 REMARK 465 ASN A 296 REMARK 465 ILE A 297 REMARK 465 CYS A 298 REMARK 465 GLN A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 LYS B 282 REMARK 465 ASP B 283 REMARK 465 GLY B 284 REMARK 465 ASN B 285 REMARK 465 MET B 286 REMARK 465 VAL B 287 REMARK 465 GLU B 288 REMARK 465 GLN B 289 REMARK 465 PRO B 290 REMARK 465 ASN B 291 REMARK 465 ASP B 292 REMARK 465 PRO B 293 REMARK 465 VAL B 294 REMARK 465 THR B 295 REMARK 465 ASN B 296 REMARK 465 ILE B 297 REMARK 465 CYS B 298 REMARK 465 GLN B 299 REMARK 465 ALA B 300 REMARK 465 ALA B 301 REMARK 465 LYS C 282 REMARK 465 ASP C 283 REMARK 465 GLY C 284 REMARK 465 ASN C 285 REMARK 465 MET C 286 REMARK 465 VAL C 287 REMARK 465 GLU C 288 REMARK 465 GLN C 289 REMARK 465 PRO C 290 REMARK 465 ASN C 291 REMARK 465 ASP C 292 REMARK 465 PRO C 293 REMARK 465 VAL C 294 REMARK 465 THR C 295 REMARK 465 ASN C 296 REMARK 465 ILE C 297 REMARK 465 CYS C 298 REMARK 465 GLN C 299 REMARK 465 ALA C 300 REMARK 465 ALA C 301 REMARK 465 LYS D 282 REMARK 465 ASP D 283 REMARK 465 GLY D 284 REMARK 465 ASN D 285 REMARK 465 MET D 286 REMARK 465 VAL D 287 REMARK 465 GLU D 288 REMARK 465 GLN D 289 REMARK 465 PRO D 290 REMARK 465 ASN D 291 REMARK 465 ASP D 292 REMARK 465 PRO D 293 REMARK 465 VAL D 294 REMARK 465 THR D 295 REMARK 465 ASN D 296 REMARK 465 ILE D 297 REMARK 465 CYS D 298 REMARK 465 GLN D 299 REMARK 465 ALA D 300 REMARK 465 ALA D 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 VAL A 279 CG1 CG2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 PRO A 281 CG CD REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 LEU A 359 CG CD1 CD2 REMARK 470 GLU A 431 CG CD OE1 OE2 REMARK 470 THR A 478 OG1 CG2 REMARK 470 GLU A 482 CG CD OE1 OE2 REMARK 470 MET A 483 CG SD CE REMARK 470 LEU A 484 CG CD1 CD2 REMARK 470 ASP B 266 CG OD1 OD2 REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 GLN B 273 CG CD OE1 NE2 REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 VAL B 279 CG1 CG2 REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 PRO B 281 CG CD REMARK 470 GLU B 310 CG CD OE1 OE2 REMARK 470 LEU B 359 CG CD1 CD2 REMARK 470 GLU B 431 CG CD OE1 OE2 REMARK 470 THR B 478 OG1 CG2 REMARK 470 GLU B 482 CG CD OE1 OE2 REMARK 470 MET B 483 CG SD CE REMARK 470 LEU B 484 CG CD1 CD2 REMARK 470 ASP C 266 CG OD1 OD2 REMARK 470 LYS C 271 CG CD CE NZ REMARK 470 GLN C 273 CG CD OE1 NE2 REMARK 470 GLU C 274 CG CD OE1 OE2 REMARK 470 VAL C 279 CG1 CG2 REMARK 470 GLU C 280 CG CD OE1 OE2 REMARK 470 PRO C 281 CG CD REMARK 470 GLU C 310 CG CD OE1 OE2 REMARK 470 LEU C 359 CG CD1 CD2 REMARK 470 GLU C 431 CG CD OE1 OE2 REMARK 470 THR C 478 OG1 CG2 REMARK 470 GLU C 482 CG CD OE1 OE2 REMARK 470 MET C 483 CG SD CE REMARK 470 LEU C 484 CG CD1 CD2 REMARK 470 ASP D 266 CG OD1 OD2 REMARK 470 LYS D 271 CG CD CE NZ REMARK 470 GLN D 273 CG CD OE1 NE2 REMARK 470 GLU D 274 CG CD OE1 OE2 REMARK 470 VAL D 279 CG1 CG2 REMARK 470 GLU D 280 CG CD OE1 OE2 REMARK 470 PRO D 281 CG CD REMARK 470 GLU D 310 CG CD OE1 OE2 REMARK 470 LEU D 359 CG CD1 CD2 REMARK 470 GLU D 431 CG CD OE1 OE2 REMARK 470 THR D 478 OG1 CG2 REMARK 470 GLU D 482 CG CD OE1 OE2 REMARK 470 MET D 483 CG SD CE REMARK 470 LEU D 484 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 392 OH TYR A 432 1.99 REMARK 500 OD2 ASP D 392 OH TYR D 432 2.16 REMARK 500 N GLU A 482 O HOH A 34 2.16 REMARK 500 O ILE B 402 NH1 ARG B 422 2.17 REMARK 500 OD2 ASP A 325 O HOH A 57 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 303 CE LYS C 303 NZ 0.372 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 281 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 PRO C 281 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 LYS C 303 CD - CE - NZ ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 317 -16.19 82.00 REMARK 500 ASP A 351 -93.29 56.70 REMARK 500 SER A 357 4.98 -68.87 REMARK 500 HIS A 362 138.18 94.65 REMARK 500 LYS A 390 75.75 42.93 REMARK 500 GLU A 439 0.71 -66.80 REMARK 500 HIS B 317 -18.37 82.06 REMARK 500 ASP B 351 -92.55 55.90 REMARK 500 SER B 357 5.14 -67.27 REMARK 500 HIS B 362 134.07 92.40 REMARK 500 LEU B 382 -68.63 -109.16 REMARK 500 LYS B 390 71.11 50.04 REMARK 500 ASP B 477 -75.03 -30.43 REMARK 500 MET B 481 -14.89 -49.02 REMARK 500 GLU B 482 44.06 -80.09 REMARK 500 HIS C 317 -14.65 80.18 REMARK 500 ASP C 351 -96.85 63.07 REMARK 500 HIS C 362 132.72 97.08 REMARK 500 LEU C 382 -68.16 -109.01 REMARK 500 LYS C 390 70.52 43.93 REMARK 500 ASP C 477 -76.24 -29.34 REMARK 500 MET C 481 -14.80 -47.42 REMARK 500 GLU C 482 43.77 -78.19 REMARK 500 HIS D 317 -18.77 84.88 REMARK 500 ASP D 351 -98.13 64.77 REMARK 500 SER D 357 8.55 -68.74 REMARK 500 HIS D 362 135.04 95.37 REMARK 500 LYS D 390 72.97 40.52 REMARK 500 ASP D 477 -71.19 -36.79 REMARK 500 MET D 481 -16.78 -47.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 3EYB A 266 484 UNP Q8MX78 Q8MX78_BRAFL 266 484 DBREF 3EYB B 266 484 UNP Q8MX78 Q8MX78_BRAFL 266 484 DBREF 3EYB C 266 484 UNP Q8MX78 Q8MX78_BRAFL 266 484 DBREF 3EYB D 266 484 UNP Q8MX78 Q8MX78_BRAFL 266 484 SEQRES 1 A 219 ASP MET PRO VAL GLU LYS ILE GLN GLU ALA GLU MET ALA SEQRES 2 A 219 VAL GLU PRO LYS ASP GLY ASN MET VAL GLU GLN PRO ASN SEQRES 3 A 219 ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS GLN SEQRES 4 A 219 LEU VAL THR LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS SEQRES 5 A 219 PHE SER ASP LEU PRO ILE ASP ASP GLN VAL ILE LEU LEU SEQRES 6 A 219 ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA ALA PHE SER SEQRES 7 A 219 HIS ARG SER ILE ASP VAL LYS ASP GLY ILE LEU LEU ALA SEQRES 8 A 219 SER GLY LEU HIS VAL HIS ARG SER SER ALA HIS GLN ALA SEQRES 9 A 219 GLY VAL GLY THR ILE PHE ASP ARG VAL LEU THR GLU LEU SEQRES 10 A 219 VAL ALA LYS MET ARG ASP MET LYS MET ASP LYS THR GLU SEQRES 11 A 219 LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SEQRES 12 A 219 ALA LYS GLY LEU THR ASP PRO SER LEU VAL GLU SER LEU SEQRES 13 A 219 ARG GLU LYS VAL TYR ALA SER LEU GLU GLU TYR CYS LYS SEQRES 14 A 219 GLN GLN TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU SEQRES 15 A 219 LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU LYS SEQRES 16 A 219 CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP SEQRES 17 A 219 THR PRO ILE ASP THR PHE LEU MET GLU MET LEU SEQRES 1 B 219 ASP MET PRO VAL GLU LYS ILE GLN GLU ALA GLU MET ALA SEQRES 2 B 219 VAL GLU PRO LYS ASP GLY ASN MET VAL GLU GLN PRO ASN SEQRES 3 B 219 ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS GLN SEQRES 4 B 219 LEU VAL THR LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS SEQRES 5 B 219 PHE SER ASP LEU PRO ILE ASP ASP GLN VAL ILE LEU LEU SEQRES 6 B 219 ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA ALA PHE SER SEQRES 7 B 219 HIS ARG SER ILE ASP VAL LYS ASP GLY ILE LEU LEU ALA SEQRES 8 B 219 SER GLY LEU HIS VAL HIS ARG SER SER ALA HIS GLN ALA SEQRES 9 B 219 GLY VAL GLY THR ILE PHE ASP ARG VAL LEU THR GLU LEU SEQRES 10 B 219 VAL ALA LYS MET ARG ASP MET LYS MET ASP LYS THR GLU SEQRES 11 B 219 LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SEQRES 12 B 219 ALA LYS GLY LEU THR ASP PRO SER LEU VAL GLU SER LEU SEQRES 13 B 219 ARG GLU LYS VAL TYR ALA SER LEU GLU GLU TYR CYS LYS SEQRES 14 B 219 GLN GLN TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU SEQRES 15 B 219 LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU LYS SEQRES 16 B 219 CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP SEQRES 17 B 219 THR PRO ILE ASP THR PHE LEU MET GLU MET LEU SEQRES 1 C 219 ASP MET PRO VAL GLU LYS ILE GLN GLU ALA GLU MET ALA SEQRES 2 C 219 VAL GLU PRO LYS ASP GLY ASN MET VAL GLU GLN PRO ASN SEQRES 3 C 219 ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS GLN SEQRES 4 C 219 LEU VAL THR LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS SEQRES 5 C 219 PHE SER ASP LEU PRO ILE ASP ASP GLN VAL ILE LEU LEU SEQRES 6 C 219 ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA ALA PHE SER SEQRES 7 C 219 HIS ARG SER ILE ASP VAL LYS ASP GLY ILE LEU LEU ALA SEQRES 8 C 219 SER GLY LEU HIS VAL HIS ARG SER SER ALA HIS GLN ALA SEQRES 9 C 219 GLY VAL GLY THR ILE PHE ASP ARG VAL LEU THR GLU LEU SEQRES 10 C 219 VAL ALA LYS MET ARG ASP MET LYS MET ASP LYS THR GLU SEQRES 11 C 219 LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SEQRES 12 C 219 ALA LYS GLY LEU THR ASP PRO SER LEU VAL GLU SER LEU SEQRES 13 C 219 ARG GLU LYS VAL TYR ALA SER LEU GLU GLU TYR CYS LYS SEQRES 14 C 219 GLN GLN TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU SEQRES 15 C 219 LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU LYS SEQRES 16 C 219 CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP SEQRES 17 C 219 THR PRO ILE ASP THR PHE LEU MET GLU MET LEU SEQRES 1 D 219 ASP MET PRO VAL GLU LYS ILE GLN GLU ALA GLU MET ALA SEQRES 2 D 219 VAL GLU PRO LYS ASP GLY ASN MET VAL GLU GLN PRO ASN SEQRES 3 D 219 ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS GLN SEQRES 4 D 219 LEU VAL THR LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS SEQRES 5 D 219 PHE SER ASP LEU PRO ILE ASP ASP GLN VAL ILE LEU LEU SEQRES 6 D 219 ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA ALA PHE SER SEQRES 7 D 219 HIS ARG SER ILE ASP VAL LYS ASP GLY ILE LEU LEU ALA SEQRES 8 D 219 SER GLY LEU HIS VAL HIS ARG SER SER ALA HIS GLN ALA SEQRES 9 D 219 GLY VAL GLY THR ILE PHE ASP ARG VAL LEU THR GLU LEU SEQRES 10 D 219 VAL ALA LYS MET ARG ASP MET LYS MET ASP LYS THR GLU SEQRES 11 D 219 LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SEQRES 12 D 219 ALA LYS GLY LEU THR ASP PRO SER LEU VAL GLU SER LEU SEQRES 13 D 219 ARG GLU LYS VAL TYR ALA SER LEU GLU GLU TYR CYS LYS SEQRES 14 D 219 GLN GLN TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU SEQRES 15 D 219 LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU LYS SEQRES 16 D 219 CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP SEQRES 17 D 219 THR PRO ILE ASP THR PHE LEU MET GLU MET LEU FORMUL 5 HOH *49(H2 O) HELIX 1 1 PRO A 268 VAL A 279 1 12 HELIX 2 2 ASP A 302 ARG A 314 1 13 HELIX 3 3 HIS A 317 LEU A 321 5 5 HELIX 4 4 PRO A 322 SER A 346 1 25 HELIX 5 5 HIS A 362 ALA A 369 1 8 HELIX 6 6 VAL A 371 LEU A 382 1 12 HELIX 7 7 LEU A 382 MET A 389 1 8 HELIX 8 8 ASP A 392 PHE A 405 1 14 HELIX 9 9 ASP A 414 TYR A 437 1 24 HELIX 10 10 GLY A 442 LEU A 449 1 8 HELIX 11 11 ARG A 450 LEU A 462 1 13 HELIX 12 12 GLU A 463 PHE A 466 5 4 HELIX 13 13 PHE A 467 GLY A 472 1 6 HELIX 14 14 ILE A 476 MET A 481 1 6 HELIX 15 15 PRO B 268 VAL B 279 1 12 HELIX 16 16 ASP B 302 ARG B 314 1 13 HELIX 17 17 HIS B 317 LEU B 321 5 5 HELIX 18 18 PRO B 322 SER B 346 1 25 HELIX 19 19 HIS B 362 ALA B 369 1 8 HELIX 20 20 VAL B 371 LEU B 382 1 12 HELIX 21 21 LEU B 382 LYS B 390 1 9 HELIX 22 22 ASP B 392 PHE B 405 1 14 HELIX 23 23 ASP B 414 TYR B 437 1 24 HELIX 24 24 GLY B 442 LEU B 449 1 8 HELIX 25 25 ARG B 450 LEU B 462 1 13 HELIX 26 26 GLU B 463 PHE B 466 5 4 HELIX 27 27 PHE B 467 GLY B 472 1 6 HELIX 28 28 ILE B 476 MET B 481 1 6 HELIX 29 29 PRO C 268 VAL C 279 1 12 HELIX 30 30 ASP C 302 ARG C 314 1 13 HELIX 31 31 HIS C 317 LEU C 321 5 5 HELIX 32 32 PRO C 322 SER C 346 1 25 HELIX 33 33 HIS C 362 ALA C 369 1 8 HELIX 34 34 VAL C 371 LEU C 382 1 12 HELIX 35 35 LEU C 382 MET C 389 1 8 HELIX 36 36 ASP C 392 PHE C 405 1 14 HELIX 37 37 ASP C 414 TYR C 437 1 24 HELIX 38 38 GLY C 442 LEU C 449 1 8 HELIX 39 39 ARG C 450 LEU C 462 1 13 HELIX 40 40 GLU C 463 PHE C 466 5 4 HELIX 41 41 PHE C 467 GLY C 472 1 6 HELIX 42 42 ILE C 476 MET C 481 1 6 HELIX 43 43 PRO D 268 VAL D 279 1 12 HELIX 44 44 ASP D 302 ARG D 314 1 13 HELIX 45 45 HIS D 317 LEU D 321 5 5 HELIX 46 46 PRO D 322 SER D 346 1 25 HELIX 47 47 HIS D 362 ALA D 369 1 8 HELIX 48 48 VAL D 371 LEU D 382 1 12 HELIX 49 49 LEU D 382 MET D 389 1 8 HELIX 50 50 ASP D 392 PHE D 405 1 14 HELIX 51 51 ASP D 414 TYR D 437 1 24 HELIX 52 52 GLY D 442 LEU D 449 1 8 HELIX 53 53 ARG D 450 LEU D 462 1 13 HELIX 54 54 GLU D 463 PHE D 466 5 4 HELIX 55 55 PHE D 467 GLY D 472 1 6 HELIX 56 56 ILE D 476 MET D 481 1 6 CRYST1 78.723 96.120 131.343 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007614 0.00000