HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-OCT-08 3EYP TITLE CRYSTAL STRUCTURE OF PUTATIVE ALPHA-L-FUCOSIDASE FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALPHA-L-FUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE LIPOPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_2192; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, HYDROLASE, LIPOPROTEIN, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,J.FREEMAN,K.T.BAIN,S.HU,R.ROMERO,S.WASSERMAN,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 7 27-DEC-23 3EYP 1 REMARK REVDAT 6 10-FEB-21 3EYP 1 AUTHOR JRNL REMARK REVDAT 5 14-NOV-18 3EYP 1 AUTHOR REVDAT 4 25-OCT-17 3EYP 1 REMARK REVDAT 3 13-JUL-11 3EYP 1 VERSN REVDAT 2 24-FEB-09 3EYP 1 VERSN REVDAT 1 04-NOV-08 3EYP 0 JRNL AUTH J.B.BONANNO,J.FREEMAN,K.T.BAIN,S.HU,R.ROMERO,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ALPHA-L-FUCOSIDASE FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 94091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4717 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6490 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 341 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 638 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 2.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7591 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5121 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10321 ; 1.613 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12417 ; 1.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 927 ; 6.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 362 ;32.594 ;23.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1203 ;15.212 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;18.982 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1084 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8509 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1612 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4580 ; 0.901 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1866 ; 0.279 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7365 ; 1.491 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3011 ; 2.579 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2950 ; 3.878 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94178 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 98.173 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.63900 REMARK 200 R SYM FOR SHELL (I) : 0.63900 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM TRI-CITRATE PH 7.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.35450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.10350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.59650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.10350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.35450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.59650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.35450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.59650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.10350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.59650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.35450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.10350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 23 REMARK 465 LYS A 483 REMARK 465 GLU A 484 REMARK 465 GLY A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 MET B 23 REMARK 465 LYS B 483 REMARK 465 GLU B 484 REMARK 465 GLY B 485 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS A 427 CG CD CE NZ REMARK 470 ASN A 428 CG OD1 ND2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 ARG B 298 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 354 CG CD CE NZ REMARK 470 LYS B 356 CG CD CE NZ REMARK 470 LYS B 396 CG CD CE NZ REMARK 470 LYS B 427 CG CD CE NZ REMARK 470 ASN B 428 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 43 -50.96 70.51 REMARK 500 ASN A 72 66.08 -161.12 REMARK 500 ALA A 75 42.40 -152.97 REMARK 500 LYS A 98 116.03 -161.73 REMARK 500 LYS A 220 -122.56 51.55 REMARK 500 ASP A 253 42.74 -97.65 REMARK 500 GLU A 254 -67.53 -21.88 REMARK 500 SER A 307 -79.07 -134.56 REMARK 500 ASN A 373 19.33 55.31 REMARK 500 ASP A 401 20.01 -143.20 REMARK 500 GLN A 439 -74.60 -107.84 REMARK 500 GLU B 43 -51.81 69.42 REMARK 500 ASN B 72 64.10 -158.92 REMARK 500 ALA B 75 53.40 -155.00 REMARK 500 LYS B 220 -127.83 49.81 REMARK 500 ASP B 253 54.93 -113.03 REMARK 500 SER B 307 -72.51 -130.76 REMARK 500 SER B 312 -165.59 -129.85 REMARK 500 ASP B 401 22.27 -149.02 REMARK 500 GLN B 439 -73.41 -110.14 REMARK 500 ILE B 441 -76.19 -113.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11092K RELATED DB: TARGETDB DBREF 3EYP A 26 483 UNP Q8A5P6 Q8A5P6_BACTN 26 483 DBREF 3EYP B 26 483 UNP Q8A5P6 Q8A5P6_BACTN 26 483 SEQADV 3EYP MET A 23 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP SER A 24 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP LEU A 25 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP GLU A 484 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP GLY A 485 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS A 486 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS A 487 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS A 488 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS A 489 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS A 490 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS A 491 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP MET B 23 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP SER B 24 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP LEU B 25 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP GLU B 484 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP GLY B 485 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS B 486 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS B 487 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS B 488 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS B 489 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS B 490 UNP Q8A5P6 EXPRESSION TAG SEQADV 3EYP HIS B 491 UNP Q8A5P6 EXPRESSION TAG SEQRES 1 A 469 MET SER LEU ALA PRO CYS GLY LEU VAL PRO SER ALA ARG SEQRES 2 A 469 GLN LEU GLU TRP TYR ASN ARG GLU MET ILE ALA PHE PHE SEQRES 3 A 469 HIS PHE GLY ILE ASN THR PHE GLU GLU TYR VAL ASN GLU SEQRES 4 A 469 GLY ASP GLY LYS ALA SER THR ALA ILE PHE ASN PRO THR SEQRES 5 A 469 ALA LEU ASP CYS ARG GLN TRP MET GLN THR LEU LYS ALA SEQRES 6 A 469 ALA GLY ILE PRO ALA ALA ILE LEU THR ALA LYS HIS ALA SEQRES 7 A 469 ASP GLY PHE CYS LEU TRP PRO SER LYS TYR THR ASP TYR SEQRES 8 A 469 SER VAL LYS ASN ALA ALA TRP LYS ASN GLY LYS GLY ASP SEQRES 9 A 469 VAL VAL ARG GLU PHE VAL ASP ALA CYS GLU GLU TYR GLY SEQRES 10 A 469 LEU LYS ALA GLY ILE TYR LEU GLY PRO HIS ASP ARG HIS SEQRES 11 A 469 GLU HIS LEU SER PRO LEU TYR THR THR GLU ARG TYR LYS SEQRES 12 A 469 GLU TYR TYR ALA HIS GLN LEU GLY GLU LEU MET SER ASP SEQRES 13 A 469 TYR GLY LYS ILE TRP GLU THR TRP TRP ASP GLY ALA GLY SEQRES 14 A 469 ALA ASP GLU LEU THR THR PRO VAL TYR ARG HIS TRP TYR SEQRES 15 A 469 LYS ILE VAL ARG GLU LYS GLN PRO ASP CYS VAL ILE PHE SEQRES 16 A 469 GLY THR LYS ASN SER TYR PRO PHE ALA ASP VAL ARG TRP SEQRES 17 A 469 MET GLY ASN GLU ALA GLY GLU ALA GLY ASP PRO CYS TRP SEQRES 18 A 469 ALA THR THR ASP SER VAL ALA ILE ARG ASP GLU ALA GLN SEQRES 19 A 469 TYR TYR LYS GLY LEU ASN GLU GLY MET LEU ASP GLY ASP SEQRES 20 A 469 ALA TYR ILE PRO ALA GLU THR ASP VAL SER ILE ARG PRO SEQRES 21 A 469 SER TRP PHE TYR HIS ALA GLU GLU ASP SER ARG VAL LYS SEQRES 22 A 469 SER VAL ARG GLU LEU TRP ASP ILE TYR CYS THR SER VAL SEQRES 23 A 469 GLY ARG ASN SER VAL LEU LEU LEU ASN PHE PRO PRO ASP SEQRES 24 A 469 ARG ARG GLY LEU ILE HIS SER THR ASP SER LEU HIS ALA SEQRES 25 A 469 ALA LEU LEU LYS GLN GLY ILE ASP GLU THR PHE SER THR SEQRES 26 A 469 ASN LEU LEU ARG GLY ALA LYS VAL LYS ALA THR ASN VAL SEQRES 27 A 469 ARG GLY ALA LYS TYR SER PRO GLU LYS MET LEU ASP ASN SEQRES 28 A 469 GLU LYS ASN THR TYR PHE ALA GLY LYS ASP GLY GLU VAL SEQRES 29 A 469 LYS ALA ASP ILE ILE PHE THR LEU PRO LYS THR ILE GLU SEQRES 30 A 469 PHE ASP CYS LEU MET ILE GLU GLU VAL ILE GLU LEU GLY SEQRES 31 A 469 HIS ARG THR THR LYS TRP SER VAL GLU TYR THR VAL ASP SEQRES 32 A 469 GLY LYS ASN TRP ILE THR ILE PRO GLU ALA THR ASP LYS SEQRES 33 A 469 GLN ALA ILE GLY HIS LYS TRP ILE VAL ARG LEU ALA PRO SEQRES 34 A 469 VAL LYS ALA LYS GLN VAL ARG LEU ARG ILE GLN ASP GLY SEQRES 35 A 469 LYS ALA CYS PRO ALA ILE HIS THR PHE GLY VAL TYR LYS SEQRES 36 A 469 GLN SER PRO VAL PHE LYS GLU GLY HIS HIS HIS HIS HIS SEQRES 37 A 469 HIS SEQRES 1 B 469 MET SER LEU ALA PRO CYS GLY LEU VAL PRO SER ALA ARG SEQRES 2 B 469 GLN LEU GLU TRP TYR ASN ARG GLU MET ILE ALA PHE PHE SEQRES 3 B 469 HIS PHE GLY ILE ASN THR PHE GLU GLU TYR VAL ASN GLU SEQRES 4 B 469 GLY ASP GLY LYS ALA SER THR ALA ILE PHE ASN PRO THR SEQRES 5 B 469 ALA LEU ASP CYS ARG GLN TRP MET GLN THR LEU LYS ALA SEQRES 6 B 469 ALA GLY ILE PRO ALA ALA ILE LEU THR ALA LYS HIS ALA SEQRES 7 B 469 ASP GLY PHE CYS LEU TRP PRO SER LYS TYR THR ASP TYR SEQRES 8 B 469 SER VAL LYS ASN ALA ALA TRP LYS ASN GLY LYS GLY ASP SEQRES 9 B 469 VAL VAL ARG GLU PHE VAL ASP ALA CYS GLU GLU TYR GLY SEQRES 10 B 469 LEU LYS ALA GLY ILE TYR LEU GLY PRO HIS ASP ARG HIS SEQRES 11 B 469 GLU HIS LEU SER PRO LEU TYR THR THR GLU ARG TYR LYS SEQRES 12 B 469 GLU TYR TYR ALA HIS GLN LEU GLY GLU LEU MET SER ASP SEQRES 13 B 469 TYR GLY LYS ILE TRP GLU THR TRP TRP ASP GLY ALA GLY SEQRES 14 B 469 ALA ASP GLU LEU THR THR PRO VAL TYR ARG HIS TRP TYR SEQRES 15 B 469 LYS ILE VAL ARG GLU LYS GLN PRO ASP CYS VAL ILE PHE SEQRES 16 B 469 GLY THR LYS ASN SER TYR PRO PHE ALA ASP VAL ARG TRP SEQRES 17 B 469 MET GLY ASN GLU ALA GLY GLU ALA GLY ASP PRO CYS TRP SEQRES 18 B 469 ALA THR THR ASP SER VAL ALA ILE ARG ASP GLU ALA GLN SEQRES 19 B 469 TYR TYR LYS GLY LEU ASN GLU GLY MET LEU ASP GLY ASP SEQRES 20 B 469 ALA TYR ILE PRO ALA GLU THR ASP VAL SER ILE ARG PRO SEQRES 21 B 469 SER TRP PHE TYR HIS ALA GLU GLU ASP SER ARG VAL LYS SEQRES 22 B 469 SER VAL ARG GLU LEU TRP ASP ILE TYR CYS THR SER VAL SEQRES 23 B 469 GLY ARG ASN SER VAL LEU LEU LEU ASN PHE PRO PRO ASP SEQRES 24 B 469 ARG ARG GLY LEU ILE HIS SER THR ASP SER LEU HIS ALA SEQRES 25 B 469 ALA LEU LEU LYS GLN GLY ILE ASP GLU THR PHE SER THR SEQRES 26 B 469 ASN LEU LEU ARG GLY ALA LYS VAL LYS ALA THR ASN VAL SEQRES 27 B 469 ARG GLY ALA LYS TYR SER PRO GLU LYS MET LEU ASP ASN SEQRES 28 B 469 GLU LYS ASN THR TYR PHE ALA GLY LYS ASP GLY GLU VAL SEQRES 29 B 469 LYS ALA ASP ILE ILE PHE THR LEU PRO LYS THR ILE GLU SEQRES 30 B 469 PHE ASP CYS LEU MET ILE GLU GLU VAL ILE GLU LEU GLY SEQRES 31 B 469 HIS ARG THR THR LYS TRP SER VAL GLU TYR THR VAL ASP SEQRES 32 B 469 GLY LYS ASN TRP ILE THR ILE PRO GLU ALA THR ASP LYS SEQRES 33 B 469 GLN ALA ILE GLY HIS LYS TRP ILE VAL ARG LEU ALA PRO SEQRES 34 B 469 VAL LYS ALA LYS GLN VAL ARG LEU ARG ILE GLN ASP GLY SEQRES 35 B 469 LYS ALA CYS PRO ALA ILE HIS THR PHE GLY VAL TYR LYS SEQRES 36 B 469 GLN SER PRO VAL PHE LYS GLU GLY HIS HIS HIS HIS HIS SEQRES 37 B 469 HIS HET GOL A 2 6 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 6 6 HET GOL B 1 6 HET GOL B 5 6 HET GOL B 7 6 HET GOL B 8 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *638(H2 O) HELIX 1 1 SER A 33 GLU A 43 1 11 HELIX 2 2 GLY A 51 GLU A 56 5 6 HELIX 3 3 SER A 67 PHE A 71 5 5 HELIX 4 4 ASP A 77 ALA A 88 1 12 HELIX 5 5 SER A 114 ALA A 118 5 5 HELIX 6 6 ALA A 119 LYS A 124 5 6 HELIX 7 7 ASP A 126 GLY A 139 1 14 HELIX 8 8 ASP A 150 LEU A 155 1 6 HELIX 9 9 THR A 160 ASP A 178 1 19 HELIX 10 10 THR A 196 GLN A 211 1 16 HELIX 11 11 THR A 219 ALA A 226 5 8 HELIX 12 12 ASP A 247 ASP A 253 1 7 HELIX 13 13 GLU A 254 GLN A 256 5 3 HELIX 14 14 TYR A 257 GLU A 263 1 7 HELIX 15 15 HIS A 287 VAL A 294 5 8 HELIX 16 16 SER A 296 THR A 306 1 11 HELIX 17 17 SER A 307 ASN A 311 5 5 HELIX 18 18 HIS A 327 SER A 346 1 20 HELIX 19 19 GLY A 362 ASP A 372 5 11 HELIX 20 20 ILE A 409 GLY A 412 5 4 HELIX 21 21 PRO A 433 THR A 436 5 4 HELIX 22 22 SER B 33 GLU B 43 1 11 HELIX 23 23 GLY B 51 GLU B 56 5 6 HELIX 24 24 SER B 67 PHE B 71 5 5 HELIX 25 25 ASP B 77 GLY B 89 1 13 HELIX 26 26 SER B 114 ALA B 118 5 5 HELIX 27 27 ALA B 119 LYS B 124 5 6 HELIX 28 28 ASP B 126 GLY B 139 1 14 HELIX 29 29 ASP B 150 LEU B 155 1 6 HELIX 30 30 THR B 160 ASP B 178 1 19 HELIX 31 31 THR B 196 GLN B 211 1 16 HELIX 32 32 THR B 219 ALA B 226 5 8 HELIX 33 33 ASP B 247 ASP B 253 1 7 HELIX 34 34 GLU B 254 GLN B 256 5 3 HELIX 35 35 TYR B 257 GLU B 263 1 7 HELIX 36 36 HIS B 287 ASP B 291 5 5 HELIX 37 37 SER B 296 THR B 306 1 11 HELIX 38 38 SER B 307 ASN B 311 5 5 HELIX 39 39 HIS B 327 PHE B 345 1 19 HELIX 40 40 GLY B 362 ASP B 372 5 11 HELIX 41 41 ILE B 409 GLY B 412 5 4 HELIX 42 42 PRO B 433 THR B 436 5 4 SHEET 1 A 7 VAL A 215 PHE A 217 0 SHEET 2 A 7 GLU A 184 TRP A 186 1 N THR A 185 O VAL A 215 SHEET 3 A 7 LYS A 141 LEU A 146 1 N ILE A 144 O GLU A 184 SHEET 4 A 7 ALA A 92 LYS A 98 1 N LEU A 95 O TYR A 145 SHEET 5 A 7 MET A 44 PHE A 48 1 N ALA A 46 O ALA A 92 SHEET 6 A 7 VAL A 313 ASN A 317 1 O LEU A 314 N ILE A 45 SHEET 7 A 7 GLU A 275 SER A 279 1 N THR A 276 O LEU A 315 SHEET 1 B 2 THR A 245 THR A 246 0 SHEET 2 B 2 ALA A 270 TYR A 271 -1 O ALA A 270 N THR A 246 SHEET 1 C 4 LYS A 354 ALA A 357 0 SHEET 2 C 4 ALA A 388 GLU A 407 -1 O THR A 393 N LYS A 354 SHEET 3 C 4 ALA A 469 TYR A 476 -1 O TYR A 476 N CYS A 402 SHEET 4 C 4 PHE A 379 ALA A 380 -1 N PHE A 379 O ILE A 470 SHEET 1 D 5 LYS A 354 ALA A 357 0 SHEET 2 D 5 ALA A 388 GLU A 407 -1 O THR A 393 N LYS A 354 SHEET 3 D 5 TRP A 445 GLY A 464 -1 O ILE A 461 N ALA A 388 SHEET 4 D 5 THR A 415 THR A 423 -1 N THR A 423 O LYS A 455 SHEET 5 D 5 ILE A 430 THR A 431 -1 O ILE A 430 N TYR A 422 SHEET 1 E 7 VAL B 215 PHE B 217 0 SHEET 2 E 7 GLU B 184 TRP B 186 1 N THR B 185 O VAL B 215 SHEET 3 E 7 LYS B 141 LEU B 146 1 N ILE B 144 O GLU B 184 SHEET 4 E 7 ALA B 92 LYS B 98 1 N LEU B 95 O TYR B 145 SHEET 5 E 7 MET B 44 PHE B 48 1 N ALA B 46 O ALA B 92 SHEET 6 E 7 VAL B 313 ASN B 317 1 O LEU B 316 N ILE B 45 SHEET 7 E 7 GLU B 275 SER B 279 1 N THR B 276 O LEU B 315 SHEET 1 F 2 THR B 245 THR B 246 0 SHEET 2 F 2 ALA B 270 TYR B 271 -1 O ALA B 270 N THR B 246 SHEET 1 G 4 LYS B 354 ALA B 357 0 SHEET 2 G 4 ALA B 388 GLU B 407 -1 O ILE B 391 N LYS B 356 SHEET 3 G 4 ALA B 469 TYR B 476 -1 O TYR B 476 N CYS B 402 SHEET 4 G 4 PHE B 379 ALA B 380 -1 N PHE B 379 O ILE B 470 SHEET 1 H 5 LYS B 354 ALA B 357 0 SHEET 2 H 5 ALA B 388 GLU B 407 -1 O ILE B 391 N LYS B 356 SHEET 3 H 5 TRP B 445 GLY B 464 -1 O ILE B 461 N ALA B 388 SHEET 4 H 5 THR B 415 THR B 423 -1 N GLU B 421 O ARG B 458 SHEET 5 H 5 ILE B 430 THR B 431 -1 O ILE B 430 N TYR B 422 CISPEP 1 ASP A 240 PRO A 241 0 2.10 CISPEP 2 ASP B 240 PRO B 241 0 6.36 SITE 1 AC1 9 GOL A 3 ASP A 188 GLY A 189 THR A 219 SITE 2 AC1 9 TRP A 230 GLU A 234 GLU A 254 ASP A 277 SITE 3 AC1 9 HOH A 645 SITE 1 AC2 8 GOL A 2 HIS A 49 GLU A 61 HIS A 99 SITE 2 AC2 8 TYR A 145 ASP A 188 TRP A 284 HOH A 612 SITE 1 AC3 4 LYS A 364 TYR A 365 THR A 377 TYR A 378 SITE 1 AC4 5 GLU A 43 TYR A 304 PHE A 345 MET A 404 SITE 2 AC4 5 LYS A 444 SITE 1 AC5 7 GOL B 8 ASP B 188 GLY B 189 THR B 219 SITE 2 AC5 7 TRP B 230 GLU B 234 ASP B 277 SITE 1 AC6 4 LYS B 364 TYR B 365 THR B 377 TYR B 378 SITE 1 AC7 5 GLU B 43 TYR B 304 PHE B 345 MET B 404 SITE 2 AC7 5 LYS B 444 SITE 1 AC8 10 GOL B 1 HIS B 49 GLU B 61 HIS B 99 SITE 2 AC8 10 TYR B 145 ASP B 188 GLU B 234 TRP B 284 SITE 3 AC8 10 HOH B 652 HOH B 791 CRYST1 120.709 125.193 158.207 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006321 0.00000