HEADER IMMUNE SYSTEM 21-OCT-08 3EYU TITLE PFA1 FAB FRAGMENT COMPLEXED WITH ROR2(518-525) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IF KAPPA LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: PFA1 FAB LIGHT CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PFA1 FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ROR2(518-525) PEPTIDE; COMPND 12 CHAIN: Q; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IGK-C; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BALB C; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BALB C; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 OTHER_DETAILS: THE PEPTIDE IS CHEMICALLY SYNTHESIZED. IT IS SOURCE 19 IDENTICAL TO FRAGMENT FROM HOMO SAPIENS RECEPTOR-RELATED SOURCE 20 NEUROTROPHIC TYROSINE KINASE (ROR2). KEYWDS FAB, AMYLOID, ALZHEIMER'S, PROTEIN-PEPTIDE COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.S.GARDBERG,C.G.DEALWIS REVDAT 5 27-DEC-23 3EYU 1 SEQADV LINK REVDAT 4 25-OCT-17 3EYU 1 REMARK REVDAT 3 19-JUN-13 3EYU 1 JRNL REVDAT 2 13-JUL-11 3EYU 1 VERSN REVDAT 1 12-MAY-09 3EYU 0 JRNL AUTH A.GARDBERG,L.DICE,K.PRIDGEN,J.KO,P.PATTERSON,S.OU,R.WETZEL, JRNL AUTH 2 C.DEALWIS JRNL TITL STRUCTURES OF ABETA-RELATED PEPTIDE--MONOCLONAL ANTIBODY JRNL TITL 2 COMPLEXES. JRNL REF BIOCHEMISTRY V. 48 5210 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19385664 JRNL DOI 10.1021/BI9001216 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 8780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 436 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 343 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : -0.31000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : -0.15000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.451 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.307 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.157 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3485 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4751 ; 1.246 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;34.960 ;23.788 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;16.859 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2611 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1448 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2311 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.258 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2250 ; 0.337 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3584 ; 0.598 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 0.859 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1167 ; 1.392 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 112 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6184 -13.7942 -33.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.0035 T22: -0.0080 REMARK 3 T33: -0.0248 T12: 0.0174 REMARK 3 T13: -0.0191 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 4.6015 L22: 3.0777 REMARK 3 L33: 1.4671 L12: -1.2328 REMARK 3 L13: 0.0934 L23: 0.3430 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: -0.0687 S13: 0.0023 REMARK 3 S21: -0.0709 S22: -0.1187 S23: 0.0267 REMARK 3 S31: -0.0735 S32: 0.0125 S33: 0.0493 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 113 L 219 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0938 6.1602 -3.7058 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: -0.0194 REMARK 3 T33: 0.0123 T12: -0.0454 REMARK 3 T13: 0.0315 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 1.4098 L22: 3.0543 REMARK 3 L33: 6.0889 L12: 0.4785 REMARK 3 L13: 2.3358 L23: 3.0546 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: 0.1365 S13: -0.0104 REMARK 3 S21: 0.0748 S22: 0.1223 S23: -0.0013 REMARK 3 S31: -0.1905 S32: 0.2915 S33: -0.1013 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 120 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1308 -26.6414 -19.5725 REMARK 3 T TENSOR REMARK 3 T11: -0.0065 T22: 0.0361 REMARK 3 T33: -0.0127 T12: -0.0073 REMARK 3 T13: -0.0166 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.0794 L22: 1.3972 REMARK 3 L33: 2.2293 L12: 0.5252 REMARK 3 L13: -0.0513 L23: -0.6278 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.1212 S13: 0.0490 REMARK 3 S21: 0.1120 S22: 0.0350 S23: 0.0521 REMARK 3 S31: 0.0329 S32: -0.1105 S33: -0.0447 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 121 H 225 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5226 -7.0989 4.0211 REMARK 3 T TENSOR REMARK 3 T11: 0.0935 T22: -0.0351 REMARK 3 T33: 0.0304 T12: -0.0783 REMARK 3 T13: 0.0444 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.2394 L22: 3.2986 REMARK 3 L33: 2.4159 L12: -0.9632 REMARK 3 L13: 1.0241 L23: 0.4084 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.0040 S13: -0.0098 REMARK 3 S21: 0.4123 S22: -0.1651 S23: 0.1913 REMARK 3 S31: -0.0800 S32: -0.0154 S33: 0.1699 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 3 Q 8 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0888 -25.1002 -36.2019 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.1121 REMARK 3 T33: -0.0188 T12: 0.0334 REMARK 3 T13: 0.0162 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 31.5039 L22: 4.8556 REMARK 3 L33: 16.0077 L12: -12.3681 REMARK 3 L13: 22.4568 L23: -8.8163 REMARK 3 S TENSOR REMARK 3 S11: -0.6875 S12: 0.3320 S13: 0.3922 REMARK 3 S21: -1.8527 S22: -0.2265 S23: 0.3645 REMARK 3 S31: -0.0514 S32: 0.7169 S33: 0.9140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000049938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 21.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG3350, 0.2 M LICL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 140 REMARK 465 THR H 141 REMARK 465 THR H 142 REMARK 465 GLY H 143 REMARK 465 SER H 144 REMARK 465 GLN H 181 REMARK 465 SER H 182 REMARK 465 ARG Q 1 REMARK 465 GLU Q 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 110 CD OE1 OE2 REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 SER H 15 OG REMARK 470 ARG H 83 CD NE CZ NH1 NH2 REMARK 470 ASP H 183 CB CG OD1 OD2 REMARK 470 LYS H 215 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP H 88 OG SER H 171 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO L 45 119.72 -33.39 REMARK 500 LYS L 55 63.43 35.07 REMARK 500 VAL L 56 -48.77 69.38 REMARK 500 SER L 57 20.91 -154.84 REMARK 500 ASP L 156 5.36 59.16 REMARK 500 SER H 15 -37.11 82.20 REMARK 500 LEU H 50 -64.51 -108.80 REMARK 500 ASP H 56 30.15 -93.76 REMARK 500 ASP H 57 -2.16 73.76 REMARK 500 ASP H 74 84.17 -160.09 REMARK 500 ALA H 90 -50.44 -28.26 REMARK 500 TRP H 109 164.39 177.93 REMARK 500 SER H 200 -71.65 -44.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EYS RELATED DB: PDB REMARK 900 PFA1 FAB FRAGMENT COMPLEXED WITH PYRO-GLU3-A-BETA (3-8) DBREF 3EYU L 1 219 UNP A2NHM3 A2NHM3_MOUSE 1 219 DBREF 3EYU H 1 226 PDB 3EYU 3EYU 1 226 DBREF 3EYU Q 1 8 PDB 3EYU 3EYU 1 8 SEQADV 3EYU SER L 32 UNP A2NHM3 THR 32 CONFLICT SEQADV 3EYU LEU L 101 UNP A2NHM3 ARG 101 CONFLICT SEQADV 3EYU ALA L 105 UNP A2NHM3 GLY 105 CONFLICT SEQADV 3EYU LEU L 111 UNP A2NHM3 ILE 111 CONFLICT SEQRES 1 L 219 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER ILE VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS VAL PRO LEU THR PHE GLY SEQRES 9 L 219 ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU YCM SEQRES 1 H 226 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU LYS SEQRES 2 H 226 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 H 226 PHE SER LEU SER THR SER GLY MET GLY VAL GLY TRP ILE SEQRES 4 H 226 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 H 226 ILE TRP TRP ASP ASP ASP ARG SER TYR ASN PRO SER LEU SEQRES 6 H 226 LYS SER GLN LEU THR ILE SER LYS ASP ALA ALA ARG ASN SEQRES 7 H 226 GLN VAL PHE LEU ARG ILE THR SER VAL ASP THR ALA ASP SEQRES 8 H 226 THR ALA THR TYR TYR CYS VAL ARG ARG ALA HIS THR THR SEQRES 9 H 226 VAL LEU GLY ASP TRP PHE ALA TYR TRP GLY GLN GLY THR SEQRES 10 H 226 LEU VAL THR VAL SER ALA ALA LYS THR THR ALA PRO SER SEQRES 11 H 226 VAL TYR PRO LEU ALA PRO VAL YCM GLY GLY THR THR GLY SEQRES 12 H 226 SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 H 226 PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SER LEU SEQRES 14 H 226 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 226 ASP LEU TYR THR LEU SER SER SER VAL THR VAL THR SER SEQRES 16 H 226 SER THR TRP PRO SER GLN SER ILE THR CYS ASN VAL ALA SEQRES 17 H 226 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE GLU SEQRES 18 H 226 PRO ARG GLY PRO THR SEQRES 1 Q 8 ARG GLU GLU PHE ARG HIS GLU ALA MODRES 3EYU YCM L 219 CYS S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE MODRES 3EYU YCM H 138 CYS S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HET YCM L 219 11 HET YCM H 138 10 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETSYN YCM CYSTEINE-S-ACETAMIDE FORMUL 1 YCM 2(C5 H10 N2 O3 S) FORMUL 4 HOH *23(H2 O) HELIX 1 1 GLU L 84 LEU L 88 5 5 HELIX 2 2 SER L 126 SER L 132 1 7 HELIX 3 3 LYS L 188 ARG L 193 1 6 HELIX 4 4 ASN L 217 YCM L 219 5 3 HELIX 5 5 ASP H 88 ASP H 91 5 4 HELIX 6 6 THR H 103 GLY H 107 5 5 HELIX 7 7 SER H 166 SER H 168 5 3 HELIX 8 8 PRO H 210 SER H 213 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 107 LEU L 111 1 O LYS L 108 N LEU L 11 SHEET 3 B 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 B 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 B 6 LYS L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 B 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 107 LEU L 111 1 O LYS L 108 N LEU L 11 SHEET 3 C 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 C 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 D 4 THR L 119 PHE L 123 0 SHEET 2 D 4 GLY L 134 PHE L 144 -1 O ASN L 142 N THR L 119 SHEET 3 D 4 TYR L 178 THR L 187 -1 O SER L 182 N CYS L 139 SHEET 4 D 4 VAL L 164 TRP L 168 -1 N SER L 167 O SER L 181 SHEET 1 E 4 SER L 158 GLU L 159 0 SHEET 2 E 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 E 4 SER L 196 THR L 202 -1 O GLU L 200 N LYS L 152 SHEET 4 E 4 ILE L 210 ASN L 215 -1 O LYS L 212 N CYS L 199 SHEET 1 F 4 GLU H 6 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 23 -1 O THR H 21 N SER H 7 SHEET 3 F 4 GLN H 79 ILE H 84 -1 O ILE H 84 N LEU H 18 SHEET 4 F 4 LEU H 69 ASP H 74 -1 N SER H 72 O PHE H 81 SHEET 1 G 6 ILE H 11 LEU H 12 0 SHEET 2 G 6 THR H 117 VAL H 121 1 O THR H 120 N LEU H 12 SHEET 3 G 6 ALA H 93 ARG H 99 -1 N TYR H 95 O THR H 117 SHEET 4 G 6 GLY H 35 PRO H 42 -1 N ILE H 39 O TYR H 96 SHEET 5 G 6 GLU H 48 TRP H 54 -1 O GLU H 48 N ARG H 40 SHEET 6 G 6 ARG H 59 TYR H 61 -1 O SER H 60 N HIS H 52 SHEET 1 H 4 SER H 130 LEU H 134 0 SHEET 2 H 4 THR H 147 TYR H 155 -1 O LEU H 151 N TYR H 132 SHEET 3 H 4 TYR H 185 THR H 192 -1 O LEU H 187 N VAL H 152 SHEET 4 H 4 VAL H 173 THR H 175 -1 N HIS H 174 O SER H 190 SHEET 1 I 3 THR H 161 TRP H 164 0 SHEET 2 I 3 THR H 204 HIS H 209 -1 O ASN H 206 N THR H 163 SHEET 3 I 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.08 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 97 1555 1555 2.04 SSBOND 4 CYS H 150 CYS H 205 1555 1555 2.04 LINK C GLU L 218 N YCM L 219 1555 1555 1.34 LINK C VAL H 137 N YCM H 138 1555 1555 1.33 LINK C YCM H 138 N GLY H 139 1555 1555 1.34 CISPEP 1 THR L 7 PRO L 8 0 -9.56 CISPEP 2 VAL L 99 PRO L 100 0 10.42 CISPEP 3 TYR L 145 PRO L 146 0 7.28 CISPEP 4 PHE H 156 PRO H 157 0 -9.06 CISPEP 5 GLU H 158 PRO H 159 0 -3.60 CISPEP 6 TRP H 198 PRO H 199 0 5.64 CRYST1 41.632 42.632 58.729 96.09 93.58 91.71 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024020 0.000718 0.001588 0.00000 SCALE2 0.000000 0.023467 0.002553 0.00000 SCALE3 0.000000 0.000000 0.017161 0.00000