HEADER SIGNALING PROTEIN 23-OCT-08 3EZU TITLE CRYSTAL STRUCTURE OF MULTIDOMAIN PROTEIN OF UNKNOWN FUNCTION WITH TITLE 2 GGDEF-DOMAIN (NP_951600.1) FROM GEOBACTER SULFURREDUCENS AT 1.95 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GGDEF DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 35554; SOURCE 4 GENE: NP_951600.1, GSU0542; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_951600.1, MULTIDOMAIN PROTEIN OF UNKNOWN FUNCTION WITH GGDEF- KEYWDS 2 DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, GGDEF DOMAIN, UNKNOWN KEYWDS 4 FUNCTION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3EZU 1 REMARK SEQADV REVDAT 5 24-JUL-19 3EZU 1 REMARK LINK REVDAT 4 25-OCT-17 3EZU 1 REMARK REVDAT 3 13-JUL-11 3EZU 1 VERSN REVDAT 2 24-FEB-09 3EZU 1 VERSN REVDAT 1 18-NOV-08 3EZU 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF MULTIDOMAIN PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 WITH GGDEF-DOMAIN (NP_951600.1) FROM GEOBACTER JRNL TITL 3 SULFURREDUCENS AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 27087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1359 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2564 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.17000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.022 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2658 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1816 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3594 ; 1.352 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4396 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 5.727 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;33.673 ;22.975 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;13.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.797 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3003 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 566 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1677 ; 1.829 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 697 ; 0.505 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2674 ; 3.008 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 981 ; 4.852 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 914 ; 7.163 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 64.9855 4.4963 -2.3442 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: 0.0532 REMARK 3 T33: 0.0517 T12: -0.0085 REMARK 3 T13: -0.0047 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.7718 L22: 0.9010 REMARK 3 L33: 0.7311 L12: 0.1342 REMARK 3 L13: 0.0961 L23: 0.2565 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: 0.1092 S13: 0.0223 REMARK 3 S21: -0.0051 S22: 0.0439 S23: 0.1383 REMARK 3 S31: -0.0195 S32: -0.1108 S33: 0.0289 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 77.6571 22.2281 23.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.0440 REMARK 3 T33: 0.0338 T12: 0.0248 REMARK 3 T13: 0.0114 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 3.8186 L22: 1.1798 REMARK 3 L33: 1.4776 L12: 0.3651 REMARK 3 L13: -0.7364 L23: -0.0312 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: -0.2842 S13: 0.2990 REMARK 3 S21: 0.1046 S22: -0.0291 S23: 0.0373 REMARK 3 S31: -0.1591 S32: -0.0158 S33: -0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. THE FOLLOWING REGIONS HAVE POOR DENSITY: 125-133,332-336. REMARK 3 5. ETHYLENE GLYCOL MODELED ARE PRESENT IN CRYSTALLIZATION/CRYO REMARK 3 CONDITIONS. AN ADDITIONAL LIGAND OF UNKNOWN IDENTITY (UNL) REMARK 3 WAS MODELED. REMARK 4 REMARK 4 3EZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97967,0.97953 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.696 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : 0.66400 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M K2HPO4, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 9.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.18350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.18350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 149.10000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 131 REMARK 465 ASP A 228 REMARK 465 ASN A 229 REMARK 465 TYR A 230 REMARK 465 GLY A 231 REMARK 465 HIS A 232 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 LYS A 25 CD CE NZ REMARK 470 ARG A 63 CD NE CZ NH1 NH2 REMARK 470 GLU A 78 CD OE1 OE2 REMARK 470 ASP A 128 CG OD1 OD2 REMARK 470 SER A 130 OG REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 GLN A 233 CG CD OE1 NE2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 305 CD OE1 NE2 REMARK 470 THR A 333 OG1 CG2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 402 O HOH A 403 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 72 74.06 45.61 REMARK 500 ALA A 97 71.34 -150.82 REMARK 500 TYR A 259 -62.18 -103.51 REMARK 500 MSE A 294 -76.78 -115.58 REMARK 500 THR A 333 40.28 -95.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 345 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390844 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EZU A 1 341 UNP Q74FR4 Q74FR4_GEOSL 1 341 SEQADV 3EZU GLY A 0 UNP Q74FR4 EXPRESSION TAG SEQRES 1 A 342 GLY MSE SER GLY ASP ILE LEU ASN ASP ILE VAL ALA ALA SEQRES 2 A 342 CYS LEU GLU LEU GLU ARG LYS ALA SER SER VAL PHE LYS SEQRES 3 A 342 MSE PHE ALA ALA HIS ALA GLY SER ASP GLU ALA ARG ARG SEQRES 4 A 342 PHE TRP GLU THR VAL ALA ASP GLU THR ARG HIS HIS SER SEQRES 5 A 342 ALA VAL TYR GLU ARG LEU GLN GLU ARG GLY GLY ARG GLU SEQRES 6 A 342 ASN LEU PRO ILE ILE ILE TYR LYS PRO ALA GLU THR LEU SEQRES 7 A 342 GLU GLU LEU GLU MSE ILE GLY LYS SER ILE ASP GLU GLN SEQRES 8 A 342 VAL GLU ARG TYR THR GLU ALA PRO SER SER GLU ALA ALA SEQRES 9 A 342 CYS LEU LEU GLY PHE ARG LEU GLN LEU TYR LEU LEU HIS SEQRES 10 A 342 PRO ALA PHE ALA SER LEU CYS ARG LEU THR ARG ASP ALA SEQRES 11 A 342 SER GLY GLU ASP LEU PRO ASP ILE GLY TYR GLY ARG TYR SEQRES 12 A 342 LEU ARG ARG PHE ILE ASP GLY ILE GLY SER CYS GLY LEU SEQRES 13 A 342 ALA THR ALA GLU THR GLU LEU LEU GLY GLU ALA LEU PHE SEQRES 14 A 342 ARG LEU TRP ASN GLU ALA ARG GLN LEU ALA ALA GLN SER SEQRES 15 A 342 HIS PHE ASP ALA LEU THR GLY VAL MSE THR ARG ALA GLY SEQRES 16 A 342 PHE PHE LYS THR VAL GLY SER LEU ALA TYR ALA ALA GLN SEQRES 17 A 342 ARG SER GLY SER ASN VAL GLY ILE MSE LEU ILE ASP LEU SEQRES 18 A 342 ASP TYR PHE LYS LEU VAL GLY ASP ASN TYR GLY HIS GLN SEQRES 19 A 342 THR GLY ASP ARG ILE LEU GLN LEU VAL ALA GLU THR ILE SEQRES 20 A 342 THR SER HIS LEU ARG ARG SER ASP VAL VAL GLY ARG TYR SEQRES 21 A 342 ASP GLY ASP GLU PHE VAL VAL TYR LEU SER PRO VAL GLU SEQRES 22 A 342 PRO ALA SER LEU ARG THR VAL ALA GLU ASN LEU ARG ARG SEQRES 23 A 342 SER ILE GLU GLU GLU SER ALA ARG MSE VAL PRO VAL THR SEQRES 24 A 342 ALA SER ILE GLY VAL ALA GLN GLY ILE LEU GLY THR ASP SEQRES 25 A 342 VAL ASP GLY GLY ILE GLU GLU LEU VAL ARG LEU ALA ASP SEQRES 26 A 342 GLU CYS LEU MSE GLN ALA LYS TYR THR GLY LYS ASN LYS SEQRES 27 A 342 VAL VAL VAL LYS MODRES 3EZU MSE A 1 MET SELENOMETHIONINE MODRES 3EZU MSE A 26 MET SELENOMETHIONINE MODRES 3EZU MSE A 82 MET SELENOMETHIONINE MODRES 3EZU MSE A 190 MET SELENOMETHIONINE MODRES 3EZU MSE A 216 MET SELENOMETHIONINE MODRES 3EZU MSE A 294 MET SELENOMETHIONINE MODRES 3EZU MSE A 328 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 26 8 HET MSE A 82 8 HET MSE A 190 8 HET MSE A 216 8 HET MSE A 294 8 HET MSE A 328 8 HET UNL A 342 8 HET EDO A 343 4 HET EDO A 344 4 HET EDO A 345 4 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *200(H2 O) HELIX 1 1 GLY A 0 ALA A 31 1 32 HELIX 2 2 SER A 33 GLY A 62 1 30 HELIX 3 3 LYS A 72 ALA A 97 1 26 HELIX 4 4 SER A 99 LEU A 114 1 16 HELIX 5 5 PRO A 117 SER A 130 1 14 HELIX 6 6 GLY A 138 GLY A 149 1 12 HELIX 7 7 LEU A 155 PHE A 183 1 29 HELIX 8 8 THR A 191 GLY A 210 1 20 HELIX 9 9 GLN A 233 HIS A 249 1 17 HELIX 10 10 GLU A 272 SER A 291 1 20 HELIX 11 11 ASP A 311 THR A 333 1 23 SHEET 1 A 5 VAL A 255 ARG A 258 0 SHEET 2 A 5 GLU A 263 LEU A 268 -1 O VAL A 265 N GLY A 257 SHEET 3 A 5 ASN A 212 TYR A 222 -1 N ILE A 218 O PHE A 264 SHEET 4 A 5 VAL A 297 ILE A 307 -1 O THR A 298 N ASP A 221 SHEET 5 A 5 VAL A 338 VAL A 340 1 O VAL A 339 N ILE A 301 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N SER A 2 1555 1555 1.34 LINK C LYS A 25 N MSE A 26 1555 1555 1.32 LINK C MSE A 26 N PHE A 27 1555 1555 1.34 LINK C GLU A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N ILE A 83 1555 1555 1.33 LINK C VAL A 189 N MSE A 190 1555 1555 1.32 LINK C MSE A 190 N THR A 191 1555 1555 1.33 LINK C ILE A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N LEU A 217 1555 1555 1.33 LINK C ARG A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N VAL A 295 1555 1555 1.33 LINK C LEU A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N GLN A 329 1555 1555 1.34 CISPEP 1 SER A 269 PRO A 270 0 -5.98 SITE 1 AC1 3 GLN A 111 LEU A 167 TRP A 171 SITE 1 AC2 5 ALA A 11 GLU A 15 ARG A 18 GLN A 58 SITE 2 AC2 5 HOH A 539 SITE 1 AC3 6 ASP A 136 HIS A 182 LYS A 197 THR A 198 SITE 2 AC3 6 HOH A 392 HOH A 401 SITE 1 AC4 2 ARG A 48 GLU A 55 CRYST1 74.550 76.367 64.191 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015578 0.00000