HEADER LYASE 24-OCT-08 3F0E TITLE CRYSTAL STRUCTURE OF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE TITLE 2 SYNTHASE FROM BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MECPS, MECDP-SYNTHASE; COMPND 5 EC: 4.6.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS PSEUDOMALLEI; SOURCE 4 ORGANISM_TAXID: 28450; SOURCE 5 STRAIN: 1710B; SOURCE 6 GENE: ISPF, MECS, BPSL2098; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS NIAID, SSGCID, BURKHOLDERIA PSEUDOMALLEI, ISOPRENE BIOSYNTHESIS, KEYWDS 2 LYASE, METAL-BINDING, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 27-DEC-23 3F0E 1 REMARK SEQADV LINK REVDAT 5 30-OCT-13 3F0E 1 REMARK REVDAT 4 13-JUL-11 3F0E 1 JRNL REVDAT 3 06-JUL-11 3F0E 1 JRNL REVDAT 2 24-FEB-09 3F0E 1 VERSN REVDAT 1 04-NOV-08 3F0E 0 JRNL AUTH D.W.BEGLEY,R.C.HARTLEY,D.R.DAVIES,T.E.EDWARDS,J.T.LEONARD, JRNL AUTH 2 J.ABENDROTH,C.A.BURRIS,J.BHANDARI,P.J.MYLER,B.L.STAKER, JRNL AUTH 3 L.J.STEWART JRNL TITL LEVERAGING STRUCTURE DETERMINATION WITH FRAGMENT SCREENING JRNL TITL 2 FOR INFECTIOUS DISEASE DRUG TARGETS: MECP SYNTHASE FROM JRNL TITL 3 BURKHOLDERIA PSEUDOMALLEI. JRNL REF J STRUCT FUNCT GENOMICS V. 12 63 2011 JRNL REFN ISSN 1345-711X JRNL PMID 21359640 JRNL DOI 10.1007/S10969-011-9102-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, REMARK 1 AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, REMARK 1 AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, REMARK 1 AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, REMARK 1 AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, REMARK 1 AUTH 6 W.C.VAN VOORHIS REMARK 1 TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE REMARK 1 TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. REMARK 1 REF PLOS ONE V. 8 53851 2013 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 23382856 REMARK 1 DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 28796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1565 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3351 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11000 REMARK 3 B22 (A**2) : 2.04000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3398 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4599 ; 0.984 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 4.758 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;30.593 ;22.914 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 545 ;14.164 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2585 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2212 ; 0.406 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3498 ; 0.754 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1186 ; 1.041 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1101 ; 1.759 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 60.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PDB ENTRY 3F0D REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ SCREEN CONDITION A5, 20% PEG REMARK 280 3350, 0.2 M MAGNESIUM FORMATE, 34.4 MG/ML PROTEIN, 0.4/0.4 UL REMARK 280 DROPS, CRYSTAL ID 200155A5, PH 5.9, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.38250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.22800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.38250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.22800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 197 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 189 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLU A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 ALA A 162 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 35 REMARK 465 HIS B 36 REMARK 465 SER B 37 REMARK 465 SER B 64 REMARK 465 ASP B 65 REMARK 465 THR B 66 REMARK 465 ASP B 67 REMARK 465 PRO B 68 REMARK 465 ARG B 69 REMARK 465 PHE B 70 REMARK 465 LYS B 71 REMARK 465 GLY B 72 REMARK 465 GLU B 159 REMARK 465 ALA B 160 REMARK 465 ALA B 161 REMARK 465 ALA B 162 REMARK 465 MET C -20 REMARK 465 ALA C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 MET C -12 REMARK 465 GLY C -11 REMARK 465 THR C -10 REMARK 465 LEU C -9 REMARK 465 GLU C -8 REMARK 465 ALA C -7 REMARK 465 GLN C -6 REMARK 465 THR C -5 REMARK 465 GLN C -4 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 HIS C 36 REMARK 465 SER C 37 REMARK 465 SER C 64 REMARK 465 ASP C 65 REMARK 465 THR C 66 REMARK 465 ASP C 67 REMARK 465 PRO C 68 REMARK 465 ARG C 69 REMARK 465 PHE C 70 REMARK 465 LYS C 71 REMARK 465 GLY C 72 REMARK 465 ALA C 73 REMARK 465 GLU C 159 REMARK 465 ALA C 160 REMARK 465 ALA C 161 REMARK 465 ALA C 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LEU B 34 CG CD1 CD2 REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 -160.26 -78.90 REMARK 500 ASP A 40 94.02 -68.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 HIS A 12 NE2 101.5 REMARK 620 3 HIS A 44 ND1 106.1 111.3 REMARK 620 4 HOH A 167 O 111.1 121.8 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 163 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 239 O REMARK 620 2 HOH A 255 O 87.9 REMARK 620 3 HOH B 178 O 90.7 177.8 REMARK 620 4 HOH B 181 O 99.5 93.3 88.6 REMARK 620 5 HOH C 213 O 84.3 87.8 90.4 176.1 REMARK 620 6 HOH C 214 O 162.0 84.7 96.1 97.4 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD2 REMARK 620 2 HIS B 12 NE2 106.8 REMARK 620 3 HIS B 44 ND1 89.4 126.5 REMARK 620 4 HOH B 183 O 131.6 80.4 125.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD2 REMARK 620 2 HIS C 12 NE2 92.7 REMARK 620 3 HIS C 44 ND1 105.7 114.2 REMARK 620 4 HOH C 216 O 132.6 112.5 99.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 164 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F0D RELATED DB: PDB REMARK 900 HIGH RESOLUTION BUPSA00122A STRUCTURE WITH TWO TRIMERS IN THE AU REMARK 900 RELATED ID: BUPSA.00122.A RELATED DB: TARGETDB DBREF 3F0E A 1 162 UNP Q63T71 ISPF_BURPS 1 162 DBREF 3F0E B 1 162 UNP Q63T71 ISPF_BURPS 1 162 DBREF 3F0E C 1 162 UNP Q63T71 ISPF_BURPS 1 162 SEQADV 3F0E MET A -20 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E ALA A -19 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS A -18 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS A -17 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS A -16 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS A -15 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS A -14 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS A -13 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E MET A -12 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY A -11 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E THR A -10 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E LEU A -9 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLU A -8 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E ALA A -7 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLN A -6 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E THR A -5 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLN A -4 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY A -3 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E PRO A -2 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY A -1 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E SER A 0 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E MET B -20 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E ALA B -19 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS B -18 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS B -17 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS B -16 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS B -15 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS B -14 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS B -13 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E MET B -12 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY B -11 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E THR B -10 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E LEU B -9 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLU B -8 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E ALA B -7 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLN B -6 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E THR B -5 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLN B -4 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY B -3 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E PRO B -2 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY B -1 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E SER B 0 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E MET C -20 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E ALA C -19 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS C -18 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS C -17 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS C -16 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS C -15 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS C -14 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E HIS C -13 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E MET C -12 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY C -11 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E THR C -10 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E LEU C -9 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLU C -8 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E ALA C -7 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLN C -6 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E THR C -5 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLN C -4 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY C -3 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E PRO C -2 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E GLY C -1 UNP Q63T71 EXPRESSION TAG SEQADV 3F0E SER C 0 UNP Q63T71 EXPRESSION TAG SEQRES 1 A 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 A 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 A 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 A 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 A 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 A 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 A 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 A 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 A 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 A 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 A 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 A 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 A 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 A 183 ALA SEQRES 1 B 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 B 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 B 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 B 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 B 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 B 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 B 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 B 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 B 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 B 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 B 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 B 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 B 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 B 183 ALA SEQRES 1 C 183 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 C 183 ALA GLN THR GLN GLY PRO GLY SER MET ASP PHE ARG ILE SEQRES 3 C 183 GLY GLN GLY TYR ASP VAL HIS GLN LEU VAL PRO GLY ARG SEQRES 4 C 183 PRO LEU ILE ILE GLY GLY VAL THR ILE PRO TYR GLU ARG SEQRES 5 C 183 GLY LEU LEU GLY HIS SER ASP ALA ASP VAL LEU LEU HIS SEQRES 6 C 183 ALA ILE THR ASP ALA LEU PHE GLY ALA ALA ALA LEU GLY SEQRES 7 C 183 ASP ILE GLY ARG HIS PHE SER ASP THR ASP PRO ARG PHE SEQRES 8 C 183 LYS GLY ALA ASP SER ARG ALA LEU LEU ARG GLU CYS ALA SEQRES 9 C 183 SER ARG VAL ALA GLN ALA GLY PHE ALA ILE ARG ASN VAL SEQRES 10 C 183 ASP SER THR ILE ILE ALA GLN ALA PRO LYS LEU ALA PRO SEQRES 11 C 183 HIS ILE ASP ALA MET ARG ALA ASN ILE ALA ALA ASP LEU SEQRES 12 C 183 ASP LEU PRO LEU ASP ARG VAL ASN VAL LYS ALA LYS THR SEQRES 13 C 183 ASN GLU LYS LEU GLY TYR LEU GLY ARG GLY GLU GLY ILE SEQRES 14 C 183 GLU ALA GLN ALA ALA ALA LEU VAL VAL ARG GLU ALA ALA SEQRES 15 C 183 ALA HET MG A 163 1 HET ZN A 164 1 HET ZN B 163 1 HET ZN C 163 1 HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 4 MG MG 2+ FORMUL 5 ZN 3(ZN 2+) FORMUL 8 HOH *249(H2 O) HELIX 1 1 ASP A 40 ALA A 54 1 15 HELIX 2 2 ASP A 58 PHE A 63 1 6 HELIX 3 3 ASP A 67 LYS A 71 5 5 HELIX 4 4 ASP A 74 ALA A 89 1 16 HELIX 5 5 LEU A 107 PRO A 109 5 3 HELIX 6 6 HIS A 110 LEU A 122 1 13 HELIX 7 7 PRO A 125 ASP A 127 5 3 HELIX 8 8 LEU A 139 ARG A 144 1 6 HELIX 9 9 ASP B 40 ALA B 55 1 16 HELIX 10 10 ASP B 58 PHE B 63 1 6 HELIX 11 11 ASP B 74 ALA B 89 1 16 HELIX 12 12 LEU B 107 PRO B 109 5 3 HELIX 13 13 HIS B 110 ASP B 123 1 14 HELIX 14 14 PRO B 125 VAL B 129 5 5 HELIX 15 15 LEU B 139 ARG B 144 1 6 HELIX 16 16 ASP C 40 ALA C 54 1 15 HELIX 17 17 ASP C 58 PHE C 63 1 6 HELIX 18 18 ASP C 74 ALA C 89 1 16 HELIX 19 19 LEU C 107 PRO C 109 5 3 HELIX 20 20 HIS C 110 LEU C 122 1 13 HELIX 21 21 PRO C 125 ASP C 127 5 3 HELIX 22 22 LEU C 139 ARG C 144 1 6 SHEET 1 A 5 ARG A 31 LEU A 33 0 SHEET 2 A 5 ASP A 2 PRO A 16 -1 N VAL A 15 O GLY A 32 SHEET 3 A 5 GLY A 147 ARG A 158 -1 O ARG A 158 N ASP A 2 SHEET 4 A 5 ALA A 92 ILE A 101 -1 N ARG A 94 O LEU A 155 SHEET 5 A 5 VAL A 129 LYS A 134 1 O LYS A 132 N ILE A 100 SHEET 1 B 2 LEU A 20 ILE A 22 0 SHEET 2 B 2 VAL A 25 ILE A 27 -1 O ILE A 27 N LEU A 20 SHEET 1 C 5 GLY B 32 LEU B 33 0 SHEET 2 C 5 PHE B 3 VAL B 15 -1 N VAL B 15 O GLY B 32 SHEET 3 C 5 GLY B 147 VAL B 157 -1 O VAL B 156 N ARG B 4 SHEET 4 C 5 ALA B 92 ILE B 101 -1 N ARG B 94 O LEU B 155 SHEET 5 C 5 LYS B 132 LYS B 134 1 O LYS B 134 N ILE B 100 SHEET 1 D 2 LEU B 20 ILE B 22 0 SHEET 2 D 2 VAL B 25 ILE B 27 -1 O ILE B 27 N LEU B 20 SHEET 1 E 5 ARG C 31 LEU C 33 0 SHEET 2 E 5 PHE C 3 PRO C 16 -1 N VAL C 15 O GLY C 32 SHEET 3 E 5 GLY C 147 VAL C 157 -1 O ALA C 152 N GLY C 8 SHEET 4 E 5 ALA C 92 ILE C 101 -1 N ILE C 101 O GLU C 149 SHEET 5 E 5 VAL C 129 LYS C 134 1 O LYS C 132 N ILE C 100 SHEET 1 F 2 LEU C 20 ILE C 22 0 SHEET 2 F 2 VAL C 25 ILE C 27 -1 O ILE C 27 N LEU C 20 LINK OD2 ASP A 10 ZN ZN A 164 1555 1555 1.93 LINK NE2 HIS A 12 ZN ZN A 164 1555 1555 2.07 LINK ND1 HIS A 44 ZN ZN A 164 1555 1555 2.11 LINK MG MG A 163 O HOH A 239 1555 1555 1.97 LINK MG MG A 163 O HOH A 255 1555 1555 2.13 LINK MG MG A 163 O HOH B 178 1555 1555 2.08 LINK MG MG A 163 O HOH B 181 1555 1555 1.97 LINK MG MG A 163 O HOH C 213 1555 1555 2.11 LINK MG MG A 163 O HOH C 214 1555 1555 1.97 LINK ZN ZN A 164 O HOH A 167 1555 1555 1.88 LINK OD2 ASP B 10 ZN ZN B 163 1555 1555 2.20 LINK NE2 HIS B 12 ZN ZN B 163 1555 1555 2.11 LINK ND1 HIS B 44 ZN ZN B 163 1555 1555 2.30 LINK ZN ZN B 163 O HOH B 183 1555 1555 2.31 LINK OD2 ASP C 10 ZN ZN C 163 1555 1555 2.06 LINK NE2 HIS C 12 ZN ZN C 163 1555 1555 2.02 LINK ND1 HIS C 44 ZN ZN C 163 1555 1555 2.13 LINK ZN ZN C 163 O HOH C 216 1555 1555 2.35 CISPEP 1 ALA A 104 PRO A 105 0 -4.78 CISPEP 2 ALA B 104 PRO B 105 0 -3.21 CISPEP 3 ALA C 104 PRO C 105 0 -0.76 SITE 1 AC1 6 HOH A 239 HOH A 255 HOH B 178 HOH B 181 SITE 2 AC1 6 HOH C 213 HOH C 214 SITE 1 AC2 4 ASP B 10 HIS B 12 HIS B 44 HOH B 183 SITE 1 AC3 4 ASP C 10 HIS C 12 HIS C 44 HOH C 216 SITE 1 AC4 4 ASP A 10 HIS A 12 HIS A 44 HOH A 167 CRYST1 116.765 68.456 60.882 90.00 96.71 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008564 0.000000 0.001008 0.00000 SCALE2 0.000000 0.014608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016539 0.00000