HEADER HYDROLASE, LYASE 27-OCT-08 3F10 TITLE CRYSTAL STRUCTURE OF CLOSTRIDIUM ACETOBUTYLICUM 8-OXOGUANINE DNA TITLE 2 GLYCOSYLASE IN COMPLEX WITH 8-OXOGUANOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 8-OXOGUANINE-DNA-GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.-, 4.2.99.18; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM; SOURCE 3 ORGANISM_TAXID: 1488; SOURCE 4 GENE: CAC2707, CA_C2707; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566(FPG-); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB2 KEYWDS 8OXOG, GUANINE, 8OXOGUANINE, OGG, GLYCOSYLASE, 8-OXOGUANINE, KEYWDS 2 HYDROLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FAUCHER,S.DOUBLIE REVDAT 4 27-DEC-23 3F10 1 REMARK REVDAT 3 20-OCT-21 3F10 1 REMARK SEQADV REVDAT 2 21-MAR-12 3F10 1 JRNL VERSN REVDAT 1 07-APR-09 3F10 0 JRNL AUTH F.FAUCHER,S.M.ROBEY-BOND,S.S.WALLACE,S.DOUBLIE JRNL TITL STRUCTURAL CHARACTERIZATION OF CLOSTRIDIUM ACETOBUTYLICUM JRNL TITL 2 8-OXOGUANINE DNA GLYCOSYLASE IN ITS APO FORM AND IN COMPLEX JRNL TITL 3 WITH 8-OXODEOXYGUANOSINE. JRNL REF J.MOL.BIOL. V. 387 669 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19361427 JRNL DOI 10.1016/J.JMB.2009.01.067 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4675706.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2119 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 121 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.270 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.260 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 52.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGANDS.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : LIGANDS.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3F10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000050010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 19.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 18.74 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : 0.74100 REMARK 200 FOR SHELL : 3.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG-4000, 0.1M NACITRATE, REMARK 280 20%ISOPROPANOL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.25000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.25000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.25000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.25000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.25000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.25000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.25000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.25000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.25000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.25000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.25000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.25000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 103.87500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 34.62500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 34.62500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 103.87500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 103.87500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 103.87500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 34.62500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 34.62500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 103.87500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 34.62500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 103.87500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 34.62500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 103.87500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 34.62500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 34.62500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 34.62500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 103.87500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 34.62500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 103.87500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 103.87500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 103.87500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 34.62500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 34.62500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 103.87500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 103.87500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 34.62500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 34.62500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 34.62500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 34.62500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 103.87500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 34.62500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 103.87500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 34.62500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 103.87500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 103.87500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 103.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 291 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 37.42 -96.04 REMARK 500 LYS A 10 -74.10 -46.31 REMARK 500 ASN A 20 70.33 52.74 REMARK 500 PHE A 21 106.56 -160.56 REMARK 500 VAL A 74 -58.74 -122.01 REMARK 500 THR A 176 58.74 71.60 REMARK 500 ASP A 241 -166.76 -116.12 REMARK 500 ASP A 256 96.43 -63.55 REMARK 500 ASN A 289 60.90 35.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8HG A 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 295 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F0Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM ACETOBUTYLICUM 8-OXOGUANINE REMARK 900 GLYCOSYLASE/LYASE IN ITS APO-FORM DBREF 3F10 A 1 292 UNP Q97FM4 Q97FM4_CLOAB 1 292 SEQADV 3F10 GLN A 222 UNP Q97FM4 LYS 222 ENGINEERED MUTATION SEQRES 1 A 292 MET ASP PHE ASP MET ILE GLU GLU LYS LYS ASP SER VAL SEQRES 2 A 292 ILE VAL ARG ASN VAL GLU ASN PHE GLU LEU LYS ASP ILE SEQRES 3 A 292 PHE ASP CYS GLY GLN CYS PHE ARG TRP HIS ARG GLN GLU SEQRES 4 A 292 ASN GLY ASN TYR ILE GLY ILE ALA PHE GLU LYS VAL VAL SEQRES 5 A 292 GLU VAL GLN LYS ILE GLY GLU ASP VAL VAL ILE TYR ASN SEQRES 6 A 292 ILE ASN GLU GLU GLU PHE LYS ASN VAL TRP SER GLU TYR SEQRES 7 A 292 PHE ASP LEU TYR ARG ASP TYR GLY GLU ILE LYS LYS GLU SEQRES 8 A 292 LEU SER ARG ASP PRO LEU LEU LYS LYS SER VAL ASP PHE SEQRES 9 A 292 GLY GLU GLY ILE ARG ILE LEU ARG GLN ASP PRO PHE GLU SEQRES 10 A 292 ILE LEU LEU SER PHE ILE ILE SER ALA ASN ASN ARG ILE SEQRES 11 A 292 PRO MET ILE LYS LYS CYS ILE ASN ASN ILE SER GLU LYS SEQRES 12 A 292 ALA GLY LYS LYS LEU GLU TYR LYS GLY LYS ILE TYR TYR SEQRES 13 A 292 ALA PHE PRO THR VAL ASP LYS LEU HIS GLU PHE THR GLU SEQRES 14 A 292 LYS ASP PHE GLU GLU CYS THR ALA GLY PHE ARG ALA LYS SEQRES 15 A 292 TYR LEU LYS ASP THR VAL ASP ARG ILE TYR ASN GLY GLU SEQRES 16 A 292 LEU ASN LEU GLU TYR ILE LYS SER LEU ASN ASP ASN GLU SEQRES 17 A 292 CYS HIS GLU GLU LEU LYS LYS PHE MET GLY VAL GLY PRO SEQRES 18 A 292 GLN VAL ALA ASP CYS ILE MET LEU PHE SER MET GLN LYS SEQRES 19 A 292 TYR SER ALA PHE PRO VAL ASP THR TRP VAL LYS LYS ALA SEQRES 20 A 292 MET MET SER LEU TYR VAL ALA PRO ASP VAL SER LEU LYS SEQRES 21 A 292 LYS ILE ARG ASP PHE GLY ARG GLU LYS PHE GLY SER LEU SEQRES 22 A 292 SER GLY PHE ALA GLN GLN TYR LEU PHE TYR TYR ALA ARG SEQRES 23 A 292 GLU ASN ASN ILE GLN LEU HET 8HG A 293 20 HET EDO A 294 4 HET EDO A 295 4 HETNAM 8HG 2'-DEOXY-8-OXOGUANOSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 8HG C10 H13 N5 O5 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *112(H2 O) HELIX 1 1 GLU A 22 CYS A 29 1 8 HELIX 2 2 ASN A 67 VAL A 74 1 8 HELIX 3 3 VAL A 74 PHE A 79 1 6 HELIX 4 4 ASP A 84 SER A 93 1 10 HELIX 5 5 LEU A 98 GLY A 105 1 8 HELIX 6 6 ASP A 114 ALA A 126 1 13 HELIX 7 7 ARG A 129 GLY A 145 1 17 HELIX 8 8 THR A 160 GLU A 166 1 7 HELIX 9 9 THR A 168 CYS A 175 1 8 HELIX 10 10 ALA A 177 PHE A 179 5 3 HELIX 11 11 ARG A 180 ASN A 193 1 14 HELIX 12 12 ASN A 197 LEU A 204 1 8 HELIX 13 13 ASN A 205 LYS A 214 1 10 HELIX 14 14 GLY A 220 GLN A 233 1 14 HELIX 15 15 ASP A 241 VAL A 253 1 13 HELIX 16 16 SER A 258 GLY A 271 1 14 HELIX 17 17 LEU A 273 ASN A 288 1 16 SHEET 1 A 6 ILE A 6 LYS A 9 0 SHEET 2 A 6 SER A 12 VAL A 15 -1 O SER A 12 N LYS A 9 SHEET 3 A 6 ASP A 60 TYR A 64 -1 O VAL A 61 N VAL A 15 SHEET 4 A 6 VAL A 51 ILE A 57 -1 N GLN A 55 O VAL A 62 SHEET 5 A 6 TYR A 43 ILE A 46 -1 N GLY A 45 O VAL A 52 SHEET 6 A 6 TRP A 35 ARG A 37 -1 N HIS A 36 O ILE A 44 SHEET 1 B 2 LYS A 147 TYR A 150 0 SHEET 2 B 2 LYS A 153 TYR A 156 -1 O TYR A 155 N LEU A 148 SITE 1 AC1 15 GLY A 30 PHE A 33 PHE A 122 SER A 125 SITE 2 AC1 15 ILE A 130 GLN A 222 PHE A 230 PRO A 239 SITE 3 AC1 15 ASP A 241 VAL A 244 GLN A 278 GLN A 279 SITE 4 AC1 15 PHE A 282 ARG A 286 HOH A 374 SITE 1 AC2 3 VAL A 74 ARG A 112 HOH A 344 SITE 1 AC3 1 GLN A 233 CRYST1 138.500 138.500 138.500 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007220 0.00000