HEADER TRANSFERASE 29-OCT-08 3F2K TITLE STRUCTURE OF THE TRANSPOSASE DOMAIN OF HUMAN HISTONE-LYSINE N- TITLE 2 METHYLTRANSFERASE SETMAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSPOSASE DOMAIN; COMPND 5 SYNONYM: SET DOMAIN AND MARINER TRANSPOSASE FUSION GENE-CONTAINING COMPND 6 PROTEIN, METNASE, HSMAR1; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: LYFA PEPTIDE; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETMAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR, SET DOMAIN AND MARINER KEYWDS 2 TRANSPOSASE FUSION, SET DOMAIN AND MARINER TRANSPOSASE FUSION GENE- KEYWDS 3 CONTAINING PROTEIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, SGC, ALTERNATIVE SPLICING, CHROMATIN REGULATOR, COILED KEYWDS 5 COIL, DNA DAMAGE, DNA REPAIR, DNA-BINDING, METHYLTRANSFERASE, KEYWDS 6 NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.F.AMAYA,L.DOMBROVSKI,S.NI,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOTCHKAREV,J.MIN,A.N.PLOTNIKOV,H.WU,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 6 16-OCT-24 3F2K 1 REMARK REVDAT 5 15-NOV-23 3F2K 1 REMARK REVDAT 4 06-SEP-23 3F2K 1 REMARK LINK REVDAT 3 25-AUG-09 3F2K 1 REMARK REVDAT 2 24-FEB-09 3F2K 1 VERSN REVDAT 1 25-NOV-08 3F2K 0 JRNL AUTH L.DOMBROVSKI,M.F.AMAYA,S.NI,C.BOUNTRA,J.WEIGELT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOTCHKAREV,J.MIN,A.N.PLOTNIKOV, JRNL AUTH 3 H.WU JRNL TITL THE CRYSTAL STRUCTURE OF TRANSPOSASE DOMAIN OF HUMAN JRNL TITL 2 HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 34969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1846 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2593 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.112 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3214 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4380 ; 1.729 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 5.741 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;40.091 ;24.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;12.709 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2522 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1676 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2216 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 326 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.223 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2015 ; 1.254 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3141 ; 1.853 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 2.907 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1236 ; 4.056 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000050066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.504 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2F7T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PURIFIED SETMAR TRANSPOSASE DOMAIN WAS REMARK 280 CRYSTALLIZED IN 20% PEG 3350, 0.2 M DI-NA TARTRATE., PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.41300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.26050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.41300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.26050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 271 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 48 REMARK 465 ARG A 49 REMARK 465 SER A 50 REMARK 465 ALA A 51 REMARK 465 GLN A 52 REMARK 465 TRP A 53 REMARK 465 LEU A 54 REMARK 465 ASP A 55 REMARK 465 GLN A 56 REMARK 465 GLU A 57 REMARK 465 GLU A 58 REMARK 465 ALA A 59 REMARK 465 PRO A 60 REMARK 465 LYS A 61 REMARK 465 HIS A 62 REMARK 465 PHE A 63 REMARK 465 PRO A 64 REMARK 465 LYS A 65 REMARK 465 PRO A 66 REMARK 465 ILE A 67 REMARK 465 LEU A 68 REMARK 465 ALA A 118 REMARK 465 LEU A 119 REMARK 465 VAL A 120 REMARK 465 ASN A 121 REMARK 465 ASP A 226 REMARK 465 TRP B 1 REMARK 465 VAL B 2 REMARK 465 PRO B 3 REMARK 465 TYR B 44 REMARK 465 ASP B 45 REMARK 465 ASN B 46 REMARK 465 ARG B 47 REMARK 465 ARG B 48 REMARK 465 ARG B 49 REMARK 465 SER B 50 REMARK 465 ALA B 51 REMARK 465 GLN B 52 REMARK 465 TRP B 53 REMARK 465 LEU B 54 REMARK 465 ASP B 55 REMARK 465 GLN B 56 REMARK 465 GLU B 57 REMARK 465 GLU B 58 REMARK 465 ALA B 59 REMARK 465 PRO B 60 REMARK 465 LYS B 61 REMARK 465 HIS B 62 REMARK 465 PHE B 63 REMARK 465 PRO B 64 REMARK 465 LYS B 65 REMARK 465 PRO B 66 REMARK 465 ILE B 67 REMARK 465 LEU B 68 REMARK 465 HIS B 69 REMARK 465 PRO B 70 REMARK 465 LEU B 90 REMARK 465 ASN B 91 REMARK 465 PRO B 92 REMARK 465 GLY B 93 REMARK 465 GLU B 94 REMARK 465 THR B 95 REMARK 465 ILE B 96 REMARK 465 LEU B 117 REMARK 465 ALA B 118 REMARK 465 LEU B 119 REMARK 465 VAL B 120 REMARK 465 ASN B 121 REMARK 465 ASP B 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 69 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 182 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 SER A 197 OG REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ILE B 42 CG1 CG2 CD1 REMARK 470 LEU B 43 CG CD1 CD2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 142 CG CD OE1 NE2 REMARK 470 ARG B 180 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 182 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 184 CG CD OE1 NE2 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 GLN B 209 CG CD OE1 NE2 REMARK 470 PHE B 225 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 13 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 131 O HOH B 241 1.28 REMARK 500 O HOH A 446 O HOH A 447 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 379 O HOH A 441 4545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 16 CG GLU A 16 CD 0.100 REMARK 500 GLU B 16 CG GLU B 16 CD 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 167 -72.52 -112.26 REMARK 500 GLU B 28 79.05 -152.85 REMARK 500 HIS B 167 -66.05 -108.16 REMARK 500 SER B 197 35.25 -83.89 REMARK 500 SER B 199 175.14 -53.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 227 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 OD1 REMARK 620 2 ASP A 130 OD2 92.2 REMARK 620 3 HOH A 241 O 90.9 89.8 REMARK 620 4 HOH A 242 O 178.0 89.4 87.8 REMARK 620 5 HOH A 259 O 87.4 178.5 88.8 91.0 REMARK 620 6 HOH A 469 O 88.4 86.8 176.5 92.9 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 227 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 38 OD1 REMARK 620 2 ASP B 130 OD2 102.5 REMARK 620 3 HOH B 230 O 94.4 93.2 REMARK 620 4 HOH B 259 O 81.9 172.8 92.2 REMARK 620 5 HOH B 260 O 86.2 86.4 179.3 88.3 REMARK 620 6 HOH B 331 O 171.3 84.8 89.8 90.4 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 227 DBREF 3F2K A 1 226 UNP Q53H47 SETMR_HUMAN 446 671 DBREF 3F2K B 1 226 UNP Q53H47 SETMR_HUMAN 446 671 DBREF 3F2K C 13 16 PDB 3F2K 3F2K 13 16 SEQRES 1 A 226 TRP VAL PRO HIS GLU LEU THR GLU ASN GLN LYS ASN ARG SEQRES 2 A 226 ARG PHE GLU VAL SER SER SER LEU ILE LEU ARG ASN HIS SEQRES 3 A 226 ASN GLU PRO PHE LEU ASP ARG ILE VAL THR CYS ASP GLU SEQRES 4 A 226 LYS TRP ILE LEU TYR ASP ASN ARG ARG ARG SER ALA GLN SEQRES 5 A 226 TRP LEU ASP GLN GLU GLU ALA PRO LYS HIS PHE PRO LYS SEQRES 6 A 226 PRO ILE LEU HIS PRO LYS LYS VAL MSE VAL THR ILE TRP SEQRES 7 A 226 TRP SER ALA ALA GLY LEU ILE HIS TYR SER PHE LEU ASN SEQRES 8 A 226 PRO GLY GLU THR ILE THR SER GLU LYS TYR ALA GLN GLU SEQRES 9 A 226 ILE ASP GLU MSE ASN GLN LYS LEU GLN ARG LEU GLN LEU SEQRES 10 A 226 ALA LEU VAL ASN ARG LYS GLY PRO ILE LEU LEU HIS ASP SEQRES 11 A 226 ASN ALA ARG PRO HIS VAL ALA GLN PRO THR LEU GLN LYS SEQRES 12 A 226 LEU ASN GLU LEU GLY TYR GLU VAL LEU PRO HIS PRO PRO SEQRES 13 A 226 TYR SER PRO ASP LEU LEU PRO THR ASN TYR HIS VAL PHE SEQRES 14 A 226 LYS HIS LEU ASN ASN PHE LEU GLN GLY LYS ARG PHE HIS SEQRES 15 A 226 ASN GLN GLN ASP ALA GLU ASN ALA PHE GLN GLU PHE VAL SEQRES 16 A 226 GLU SER GLN SER THR ASP PHE TYR ALA THR GLY ILE ASN SEQRES 17 A 226 GLN LEU ILE SER ARG TRP GLN LYS CYS VAL ASP CYS ASN SEQRES 18 A 226 GLY SER TYR PHE ASP SEQRES 1 B 226 TRP VAL PRO HIS GLU LEU THR GLU ASN GLN LYS ASN ARG SEQRES 2 B 226 ARG PHE GLU VAL SER SER SER LEU ILE LEU ARG ASN HIS SEQRES 3 B 226 ASN GLU PRO PHE LEU ASP ARG ILE VAL THR CYS ASP GLU SEQRES 4 B 226 LYS TRP ILE LEU TYR ASP ASN ARG ARG ARG SER ALA GLN SEQRES 5 B 226 TRP LEU ASP GLN GLU GLU ALA PRO LYS HIS PHE PRO LYS SEQRES 6 B 226 PRO ILE LEU HIS PRO LYS LYS VAL MSE VAL THR ILE TRP SEQRES 7 B 226 TRP SER ALA ALA GLY LEU ILE HIS TYR SER PHE LEU ASN SEQRES 8 B 226 PRO GLY GLU THR ILE THR SER GLU LYS TYR ALA GLN GLU SEQRES 9 B 226 ILE ASP GLU MSE ASN GLN LYS LEU GLN ARG LEU GLN LEU SEQRES 10 B 226 ALA LEU VAL ASN ARG LYS GLY PRO ILE LEU LEU HIS ASP SEQRES 11 B 226 ASN ALA ARG PRO HIS VAL ALA GLN PRO THR LEU GLN LYS SEQRES 12 B 226 LEU ASN GLU LEU GLY TYR GLU VAL LEU PRO HIS PRO PRO SEQRES 13 B 226 TYR SER PRO ASP LEU LEU PRO THR ASN TYR HIS VAL PHE SEQRES 14 B 226 LYS HIS LEU ASN ASN PHE LEU GLN GLY LYS ARG PHE HIS SEQRES 15 B 226 ASN GLN GLN ASP ALA GLU ASN ALA PHE GLN GLU PHE VAL SEQRES 16 B 226 GLU SER GLN SER THR ASP PHE TYR ALA THR GLY ILE ASN SEQRES 17 B 226 GLN LEU ILE SER ARG TRP GLN LYS CYS VAL ASP CYS ASN SEQRES 18 B 226 GLY SER TYR PHE ASP SEQRES 1 C 4 LEU TYR PHE ALA MODRES 3F2K MSE A 74 MET SELENOMETHIONINE MODRES 3F2K MSE A 108 MET SELENOMETHIONINE MODRES 3F2K MSE B 74 MET SELENOMETHIONINE MODRES 3F2K MSE B 108 MET SELENOMETHIONINE HET MSE A 74 8 HET MSE A 108 8 HET MSE B 74 8 HET MSE B 108 8 HET MG A 227 1 HET MG B 227 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *406(H2 O) HELIX 1 1 THR A 7 GLU A 28 1 22 HELIX 2 2 PHE A 30 ASP A 32 5 3 HELIX 3 3 THR A 97 GLN A 116 1 20 HELIX 4 4 ALA A 132 ALA A 137 1 6 HELIX 5 5 PRO A 139 GLY A 148 1 10 HELIX 6 6 SER A 158 LEU A 161 5 4 HELIX 7 7 LEU A 162 HIS A 167 1 6 HELIX 8 8 HIS A 167 GLN A 177 1 11 HELIX 9 9 ASN A 183 SER A 197 1 15 HELIX 10 10 ASP A 201 GLN A 209 1 9 HELIX 11 11 GLN A 209 CYS A 220 1 12 HELIX 12 12 THR B 7 GLU B 28 1 22 HELIX 13 13 PHE B 30 ASP B 32 5 3 HELIX 14 14 THR B 97 GLN B 116 1 20 HELIX 15 15 ALA B 132 ALA B 137 1 6 HELIX 16 16 ALA B 137 GLY B 148 1 12 HELIX 17 17 SER B 158 LEU B 161 5 4 HELIX 18 18 LEU B 162 HIS B 167 1 6 HELIX 19 19 HIS B 167 GLN B 177 1 11 HELIX 20 20 ASN B 183 SER B 197 1 15 HELIX 21 21 ASP B 201 GLN B 209 1 9 HELIX 22 22 GLN B 209 CYS B 220 1 12 SHEET 1 A 5 GLY A 83 PHE A 89 0 SHEET 2 A 5 LYS A 72 SER A 80 -1 N TRP A 78 O HIS A 86 SHEET 3 A 5 ILE A 34 LEU A 43 -1 N ILE A 42 O VAL A 73 SHEET 4 A 5 ILE A 126 LEU A 128 1 O ILE A 126 N VAL A 35 SHEET 5 A 5 GLU A 150 VAL A 151 1 O GLU A 150 N LEU A 127 SHEET 1 B 5 GLY B 83 SER B 88 0 SHEET 2 B 5 VAL B 73 SER B 80 -1 N TRP B 78 O HIS B 86 SHEET 3 B 5 ILE B 34 ILE B 42 -1 N LYS B 40 O VAL B 75 SHEET 4 B 5 ILE B 126 LEU B 128 1 O ILE B 126 N VAL B 35 SHEET 5 B 5 GLU B 150 VAL B 151 1 O GLU B 150 N LEU B 127 LINK C VAL A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N VAL A 75 1555 1555 1.33 LINK C GLU A 107 N MSE A 108 1555 1555 1.34 LINK C MSE A 108 N ASN A 109 1555 1555 1.33 LINK C VAL B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N VAL B 75 1555 1555 1.32 LINK C GLU B 107 N MSE B 108 1555 1555 1.35 LINK C MSE B 108 N ASN B 109 1555 1555 1.35 LINK OD1 ASP A 38 MG MG A 227 1555 1555 2.20 LINK OD2 ASP A 130 MG MG A 227 1555 1555 2.00 LINK MG MG A 227 O HOH A 241 1555 1555 2.16 LINK MG MG A 227 O HOH A 242 1555 1555 2.16 LINK MG MG A 227 O HOH A 259 1555 1555 2.04 LINK MG MG A 227 O HOH A 469 1555 1555 2.21 LINK OD1 ASP B 38 MG MG B 227 1555 1555 2.10 LINK OD2 ASP B 130 MG MG B 227 1555 1555 2.05 LINK MG MG B 227 O HOH B 230 1555 1555 2.09 LINK MG MG B 227 O HOH B 259 1555 1555 2.19 LINK MG MG B 227 O HOH B 260 1555 1555 2.32 LINK MG MG B 227 O HOH B 331 1555 1555 2.22 CISPEP 1 GLN A 138 PRO A 139 0 4.26 CISPEP 2 GLN A 177 GLY A 178 0 5.15 CISPEP 3 GLN B 177 GLY B 178 0 -3.11 SITE 1 AC1 6 ASP A 38 ASP A 130 HOH A 241 HOH A 242 SITE 2 AC1 6 HOH A 259 HOH A 469 SITE 1 AC2 6 ASP B 38 ASP B 130 HOH B 230 HOH B 259 SITE 2 AC2 6 HOH B 260 HOH B 331 CRYST1 158.826 46.521 61.748 90.00 92.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006296 0.000000 0.000224 0.00000 SCALE2 0.000000 0.021496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016205 0.00000